problem with "RuntimeError: Numpy is not available"

[JaegerCQ]

Amazing work! But i couldn't figure out why i met the problem "RuntimeError: Numpy is not available" after using "streamlit run DeepSNUPI.py ". (i have checked that the package numpy is already installed in the enviroment DeepSNUPI). Could u plz help me with the problem? thanks a lot!!!

the complete error is shown below:

RuntimeError: Numpy is not available

File "C:\Users\ls\anaconda3\envs\DeepSNUPI\lib\site-packages\streamlit\runtime\scriptrunner\script_runner.py", line 552, in _run_script exec(code, module.dict )
File "C:\Users\ls\Desktop\DeepSNUPI\DeepSNUPI.py", line 160, in fig_init = draw_DnaOrigami(dna, dna.x[:,0:6], SE_init, EE_init)
File "C:\Users\ls\Desktop\DeepSNUPI\src\visual.py", line 59, in draw_DnaOrigami trace_edges = go.Scatter3d( x=x_edges,
File "C:\Users\ls\anaconda3\envs\DeepSNUPI\lib\site-packages\plotly\graph_objs_scatter3d.py", line 2758, in init self["x"] = _v
File "C:\Users\ls\anaconda3\envs\DeepSNUPI\lib\site-packages\plotly\basedatatypes.py", line 4873, in setitem self._set_prop(prop, value)
File "C:\Users\ls\anaconda3\envs\DeepSNUPI\lib\site-packages\plotly\basedatatypes.py", line 5212, in _set_prop val = validator.validate_coerce(val)
File "C:\Users\ls\anaconda3\envs\DeepSNUPI\lib\site-packages_plotly_utils\basevalidators.py", line 401, in validate_coerce v = to_scalar_or_list(v)
File "C:\Users\ls\anaconda3\envs\DeepSNUPI\lib\site-packages_plotly_utils\basevalidators.py", line 41, in to_scalar_or_list return [to_scalar_or_list(e) for e in v]
File "C:\Users\ls\anaconda3\envs\DeepSNUPI\lib\site-packages_plotly_utils\basevalidators.py", line 41, in return [to_scalar_or_list(e) for e in v]
File "C:\Users\ls\anaconda3\envs\DeepSNUPI\lib\site-packages_plotly_utils\basevalidators.py", line 49, in to_scalar_or_list return to_scalar_or_list(np.array(v))
File "C:\Users\ls\anaconda3\envs\DeepSNUPI\lib\site-packages\torch_tensor.py", line 970, in array return self.numpy()

[SSDL-SNU]

Issue: RuntimeError: Numpy is not available

Thank you for the kind words and for using DeepSNUPI! I appreciate you bringing up this issue, and I’d be happy to help. It seems the error occurs because the program is trying to convert a torch.Tensor to a numpy array in the draw_DnaOrigami function.

Please ensure Compatibility of Dependencies

Conflicts between torch, numpy, and plotly can sometimes cause issues. Update them to compatible versions:
For reference, here are the current dependency versions in my conda environment:

• pytorch: 2.0.0
• numpy: 1.26.4
• plotly: 5.15.0

To ensure compatibility, you can update them to their latest versions:
pip install --upgrade numpy torch plotly

Thank you again and best wishes!

[JaegerCQ]

Thanks a lot!!! I sincerely appreciate your support! This work is incredibly valuable and impactful—truly beneficial and inspiring! Shuang Li, Ph.D Student Peking University, China 发件人："SNUPI (Structural NUcleic-acids Programming Interface)" ***@***.***> 发送日期：2024-12-05 11:22:49 收件人：SSDL-SNU/DeepSNUPI ***@***.***> 抄送人：Shuang Li ***@***.***>,Author ***@***.***> 主题：Re: [SSDL-SNU/DeepSNUPI] problem with "RuntimeError: Numpy is not available" (Issue #4) Issue: RuntimeError: Numpy is not availableThank you for the kind words and for using DeepSNUPI! I appreciate you bringing up this issue, and I’d be happy to help. It seems the error occurs because the program is trying to convert a torch.Tensor to a numpy array in the draw_DnaOrigami function. Here are some steps to resolve the issue: 1. Verify Numpy InstallationAlthough you've confirmed numpy is installed, ensure it’s accessible in the DeepSNUPI environment. Run the following commands in your terminal: conda activate DeepSNUPI python -c "import numpy; print(numpy.__version__)" ## 2. Ensure Compatibility of Dependencies Conflicts between torch, numpy, and plotly can sometimes cause issues. Update them to compatible versions: ```bash pip install --upgrade numpy torch plotly And here are the dependencies currently in my `conda` environment for reference: - **pytorch**: `2.0.0` - **numpy**: `1.26.4` - **plotly**: `5.15.0` ```bash Thank you again and best wishes! — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: ***@***.***>