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QA: Aqua/JET findings marked @test_broken pending fix #145

Description

@ChrisRackauckas-Claude

The grouped-tests QA group (test/qa/qa.jl) surfaces genuine Aqua and JET findings. To let the QA group go green so the grouped-tests CI conversion PR (branch grouped-tests-ci) can merge, the failing checks are run in non-failing form and recorded with @test_broken (the passing Aqua sub-checks continue to run). These should be fixed and the @test_broken markers removed.

Findings (Julia 1.11.9, Aqua 0.8.16, JET 0.9.20):

  • Aqua ambiguities — 18 ambiguities, all among the optimize overloads in src/api/optimize.jl (e.g. optimize(f, F, bounds::ConstraintBounds, method, opts) vs optimize(f, constraints, individual, method, opts)).
  • Aqua unbound_args — 3 methods with unbound type parameters in src/api/expressions.jl:
    • (e::Expression)(vals::T...) where T (line 13)
    • evaluate(ex::Symbol, psyms::Dict{Symbol,Int}, vals::T...) where T (line 103)
    • evaluate(ex::Expr, psyms::Dict{Symbol,Int}, vals::T...) where T (line 92)
  • Aqua piracies — 7 methods of type piracy: copyto!(::Expr,::Expr), getindex(::Expr,::Int), length(::Expr), setindex!(::Expr,_,::Int) (src/api/expressions.jl), replace(::Vector{P}; minchange) + its kwcall (src/mutations.jl:422), and value(::NLSolversBase.AbstractConstraints, x) (src/api/constraints.jl:8).
  • JET report_package — multiple errors, e.g. no matching method found +(::Nothing, ::Int64) (nidx + 1), and kwcall no-matching-method on the deprecated crossover/mutation aliases (uniformbin/exponential/domainrange/waverage/intermediate/line -> BINX/EXPX/BGA/WAX/IC/LC) in src/deprecated.jl:116.

All other Aqua sub-checks (undefined exports, project-toml comparison, stale deps, compat bounds, persistent tasks) pass.

Note (harness, not a finding): the QA driver's using Pkg (used to activate test/qa/Project.toml) requires Pkg to be on the test load path, but the test target only listed Test + StableRNGs, so the QA group could not even load under the grouped-tests runner (Pkg.test() on project: "."). Pkg was added to the main Project.toml [extras] and [targets].test, plus a Pkg = "1" [compat] entry (so Aqua deps_compat stays green). This matches the pattern already used by FastBroadcast.jl.

Ignore until reviewed by @ChrisRackauckas.

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