From a list of differential genes.
6.1 Extracting the coordinates of genes
Using biomartr
6.2 Adding or substracting X nts
For instance, 5000 nts
If gene is on DNA strand + then substract 5000 nts
If gene is on DNA strand - then add 5000 nts
Promoter retrieval using GenomicRanges
MEME for motif...
From a list of differential genes.
6.1 Extracting the coordinates of genes
Using
biomartr6.2 Adding or substracting X nts
For instance, 5000 nts
If gene is on DNA strand + then substract 5000 nts
If gene is on DNA strand - then add 5000 nts
Promoter retrieval using GenomicRanges
MEME for motif...