diff --git a/code/SoS/mnm_analysis/mnm_methods/qtl_rss_analysis.ipynb b/code/SoS/mnm_analysis/mnm_methods/qtl_rss_analysis.ipynb new file mode 100644 index 000000000..d036f710f --- /dev/null +++ b/code/SoS/mnm_analysis/mnm_methods/qtl_rss_analysis.ipynb @@ -0,0 +1,110 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": "# RSS Fine-mapping and TWAS Weights with QTL Summary Statistics\n\nFine-maps a cis window and learns TWAS weights from cis-QTL **summary statistics** plus an\nLD reference panel, without individual-level genotypes." + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": "## Overview\n\n`mnm_regression.ipynb` fits a cis window from individual-level data: it needs the genotype\nmatrix and the phenotype for every sample. That is not always possible -- summary statistics\nare shareable where genotypes are not, and a scan that has already run need not be repeated.\n\nThis module takes the other route. It reads a cis-QTL nominal association table (effect,\nstandard error and the variant id per SNP), pairs it with an LD reference panel, and hands\nthe resulting `QtlSumStats` to the same two pipelines the individual-level route uses:\n\n- **`qtl_rss_fine_mapping`** runs SuSiE-RSS (`susieR::susie_rss`) over the window. The\n regression-with-summary-statistics likelihood replaces the individual-level one; credible\n sets and PIPs mean what they always did.\n- **`qtl_rss_twas_weights`** learns predictive weights from the same object. Not every\n method has a summary-statistics implementation: `mrash`, `lasso`, `scad`, `mcp`,\n `l0learn`, `mrmash` and `dpr_gibbs` do; `enet` and the `bayes_*` family are\n individual-level only and will be rejected here.\n\n**The LD panel is the load-bearing input.** RSS reconstructs the joint fit from marginal\nstatistics and LD, so the panel must cover the window's variants and must be on the same\nallele orientation. `summaryStatsQc()` harmonizes the two and reports what it corrected --\nread that line. If it says it sign- or strand-flipped everything, the alleles were declared\nwrong, not fixed (see `--variant-id-alleles` below).\n\n**When to run it.** After a cis scan (`TensorQTL.ipynb`), in place of\n`mnm_regression.ipynb`'s `susie_twas` when only summary statistics are available." + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": "## Input\n\n- `--sumstats` **`output/cis/example.cis_qtl.pairs.tsv.gz`**\n(the cis-QTL nominal table from `TensorQTL.ipynb`: one row per (trait, variant) with\n`bhat`/`sebhat`, `pvalue`, `af` and `n`. A `z` column is used if present, otherwise the Wald\nz `bhat/sebhat` is derived.)\n\n- `--ld-sketch` **`tests/fixtures/qtl_mini/protocol_example.genotype.chr22.bed`**\n(the LD reference panel: a genotype path/prefix, or a per-chromosome LD meta file. Its\nvariants must cover the window.)\n\n- `--study` / `--context` / `--trait` -- the tuple this collection describes. `--trait` is\nthe gene id, and is also what the trait filter matches.\n\n- `--trait-column` (default `molecular_trait_id`) -- a cis scan writes *every* gene into one\ntable, so the rows for `--trait` are selected by this column. Set it empty for a file that\nalready holds one gene.\n\n- `--variant-id-alleles` (`none` | `A2A1` | `A1A2`) -- where the alleles come from when the\ntable has no `A1`/`A2` columns, as a cis scan typically does not: they sit inside the variant\nid. **The order cannot be inferred from the string** -- a `.pvar` writes `REF:ALT` (pecotmr's\ncanonical `A2:A1`) while a PLINK `.bim` writes `A1:A2` -- so declare which one your ids use.\nA real `A1`/`A2` column always wins. Declaring it wrong is silent: QC will \"correct\" the\napparent mismatch by flipping every variant against the panel.\n\n- `--genome` (default `GRCh38`), `--region`, `--n-sample`, `--column-mapping` -- optional.\n\nQC knobs are forwarded to `summaryStatsQc()`: `--maf`, `--mac`, `--imiss`,\n`--z-mismatch-qc`, `--pip-cutoff-to-skip`, and `--skip-qc` for diagnostics." + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": "## Output\n\n- `{cwd}/sumstats/{study}.{context}.{trait}.qtl_sumstats.rds` -- the `QtlSumStats`: the\nwindow's variants with `SNP`/`A1`/`A2`/`Z`/`N` (plus `BETA`/`SE`/`P`/`AF` when supplied), the\nLD panel attached as the `ldSketch`, and a `qcInfo` audit of what QC did.\n- `{cwd}/fine_mapping/{...}.qtl_rss_finemap.rds` -- a `QtlFineMappingResult`: credible sets\nand PIPs from SuSiE-RSS, the same class the individual-level route produces.\n- `{cwd}/twas_weights/{...}.qtl_rss_twas_weights.rds` -- a `TwasWeights` collection.\n\nEach step also writes `.stdout` / `.stderr` beside its output. The QC line in the sumstats\nlog is worth reading every time:\n\n```\n[study/context/gene] QC summary: 200 in -> 200 out | corrected: sign-flip 0, strand-flip 0\n```" + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": "## Minimal Working Example\n\nRuns on the committed chr22 toy data: the TensorQTL nominal table for 16 genes, with the\nsame 49-sample genotypes used as the LD reference (in-sample LD -- fine for a smoke test,\noptimistic for real inference, where a separate reference panel belongs)." + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": "sos run pipeline/qtl_rss_analysis.ipynb qtl_rss \\\n --cwd output/qtl_rss \\\n --sumstats tests/fixtures/tensorqtl/expected/cis_qtl.pairs.tsv.gz \\\n --ld-sketch tests/fixtures/qtl_mini/protocol_example.genotype.chr22.bed \\\n --study test_study --context context1 --trait ENSG00000283047 \\\n --variant-id-alleles A1A2 \\\n --methods susie --twas-methods lasso -j1" + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": "## Command Interface" + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": "sos run pipeline/qtl_rss_analysis.ipynb -h" + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": "## Workflow implementation" + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": "[global]\nparameter: cwd = path('output')\nparameter: modular_script_dir = path('code/script')\n# --- the (study, context, trait) this run describes ------------------\nparameter: study = str\nparameter: context = str\nparameter: trait = str\n# --- inputs ----------------------------------------------------------\nparameter: sumstats = path\nparameter: ld_sketch = path\nparameter: genome = 'GRCh38'\nparameter: region = ''\nparameter: n_sample = -1.0 # study-level total N; <0 = take it from the file\nparameter: column_mapping = ''\n# A cis scan writes every gene into one table; empty = the file holds one trait.\nparameter: trait_column = 'molecular_trait_id'\n# Where the alleles live when there is no A1/A2 column: none | A2A1 | A1A2.\n# Declaring this wrong is silent -- see the Input section.\nparameter: variant_id_alleles = 'none'\n# --- QC knobs (forwarded to summaryStatsQc) --------------------------\nparameter: maf = 0.0\nparameter: mac = 0.0\nparameter: imiss = 1.0\nparameter: z_mismatch_qc = 'none' # none | slalom | dentist\nparameter: pip_cutoff_to_skip = 0.0\nparameter: skip_qc = False\n# --- fine-mapping knobs (forwarded to fine_mapping.R) ----------------\nparameter: methods = 'susie'\nparameter: coverage = 0.95\nparameter: secondary_coverage = '0.7,0.5'\nparameter: min_abs_corr = 0.5\nparameter: pip_cutoff = 0.025\nparameter: L = 10\nparameter: L_greedy = 'none' # 'none'/'off' = greedy off (default); a positive int enables greedy-L\nparameter: ser_fallback = True\nparameter: r_mismatch = 'none' # none | eb | eb_mix\nparameter: method_args = '' # JSON {token: {kwarg: value}}\n# --- TWAS-weight knobs (forwarded to twas_weights.R) -----------------\n# Summary-statistics implementations only: mrash, lasso, scad, mcp, l0learn,\n# mrmash, dpr_gibbs. enet and the bayes_* family are individual-level only.\nparameter: twas_methods = 'lasso'\nparameter: seed = 999\n# --- cluster resources -----------------------------------------------\nparameter: job_size = 1\nparameter: walltime = '5h'\nparameter: mem = '16G'\nparameter: numThreads = 1\nparameter: container = ''\nparameter: entrypoint = ''\n\nprefix = f'{study}.{context}.{trait}'" + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": "[qtl_rss_1, generate_qtl_sumstats]\n# Read the cis-QTL nominal table, restrict it to this trait, attach the LD panel\n# and run summaryStatsQc -> one QtlSumStats for the window.\noutput: f'{cwd:a}/sumstats/{prefix}.qtl_sumstats.rds'\ntask: trunk_workers = 1, trunk_size = job_size, walltime = walltime, mem = mem, cores = numThreads, tags = f'{step_name}_{_output:bn}'\nbash: expand = '${ }', stderr = f'{_output:n}.stderr', stdout = f'{_output:n}.stdout', container = container, entrypoint = entrypoint\n Rscript ${modular_script_dir}/pecotmr_integration/qtl_sumstats_construct.R \\\n --sumstats ${sumstats:a} \\\n --study ${study} \\\n --context ${context} \\\n --trait ${trait} \\\n --trait-column '${trait_column}' \\\n --variant-id-alleles ${variant_id_alleles} \\\n --ld-sketch ${ld_sketch:a} \\\n --genome ${genome} \\\n ${('--region ' + region) if region else ''} \\\n ${('--n-sample ' + str(n_sample)) if n_sample >= 0 else ''} \\\n ${('--column-mapping ' + column_mapping) if column_mapping else ''} \\\n --maf ${maf} \\\n --mac ${mac} \\\n --imiss ${imiss} \\\n --z-mismatch-qc ${z_mismatch_qc} \\\n --pip-cutoff-to-skip ${pip_cutoff_to_skip} \\\n ${'--skip-qc' if skip_qc else ''} \\\n --output ${_output}" + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": "[qtl_rss_2, qtl_rss_fine_mapping]\n# SuSiE-RSS over the window: the same fine_mapping.R the individual-level and\n# GWAS routes use, dispatching on the QtlSumStats class.\ninput: f'{cwd:a}/sumstats/{prefix}.qtl_sumstats.rds'\noutput: f'{cwd:a}/fine_mapping/{prefix}.qtl_rss_finemap.rds'\ntask: trunk_workers = 1, trunk_size = job_size, walltime = walltime, mem = mem, cores = numThreads, tags = f'{step_name}_{_output:bn}'\nbash: expand = '${ }', stderr = f'{_output:n}.stderr', stdout = f'{_output:n}.stdout', container = container, entrypoint = entrypoint\n Rscript ${modular_script_dir}/pecotmr_integration/fine_mapping.R \\\n --qtl-sumstats ${_input} \\\n --methods ${methods} \\\n --coverage ${coverage} \\\n --secondary-coverage ${secondary_coverage} \\\n --min-abs-corr ${min_abs_corr} \\\n --pip-cutoff ${pip_cutoff} \\\n --L ${L} \\\n --L-greedy ${L_greedy} \\\n --ser-fallback ${'TRUE' if ser_fallback else 'FALSE'} \\\n --r-mismatch ${r_mismatch} \\\n ${('--method-args ' + repr(method_args)) if method_args else ''} \\\n --seed ${seed} \\\n --output ${_output}" + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": "[qtl_rss_3, qtl_rss_twas_weights]\n# RSS TWAS weights from the same collection. A QtlSumStats already spans one\n# window, so no --gene-id / --region selection applies.\ninput: f'{cwd:a}/sumstats/{prefix}.qtl_sumstats.rds'\noutput: f'{cwd:a}/twas_weights/{prefix}.qtl_rss_twas_weights.rds'\ntask: trunk_workers = 1, trunk_size = job_size, walltime = walltime, mem = mem, cores = numThreads, tags = f'{step_name}_{_output:bn}'\nbash: expand = '${ }', stderr = f'{_output:n}.stderr', stdout = f'{_output:n}.stdout', container = container, entrypoint = entrypoint\n Rscript ${modular_script_dir}/pecotmr_integration/twas_weights.R \\\n --qtl-sumstats ${_input} \\\n --methods ${twas_methods} \\\n --seed ${seed} \\\n --output ${_output}" + } + ], + "metadata": { + "kernelspec": { + "display_name": "SoS", + "language": "sos", + "name": "sos" + }, + "language_info": { + "codemirror_mode": "sos", + "file_extension": ".sos", + "mimetype": "text/x-sos", + "name": "sos", + "nbconvert_exporter": "sos_notebook.converter.SoS_Exporter", + "pygments_lexer": "sos" + }, + "sos": { + "kernels": [ + [ + "SoS", + "sos", + "sos", + "", + "" + ] + ], + "version": "" + } + }, + "nbformat": 4, + "nbformat_minor": 4 +} diff --git a/code/script/pecotmr_integration/fine_mapping.R b/code/script/pecotmr_integration/fine_mapping.R index 2b29029a7..d1ef895e3 100644 --- a/code/script/pecotmr_integration/fine_mapping.R +++ b/code/script/pecotmr_integration/fine_mapping.R @@ -16,6 +16,9 @@ # # GWAS — one call per per-block GwasSumStats RDS (each carrying its own # z-scores + LD sketch; no gene/region concept): +# --qtl-sumstats pecotmr::QtlSumStats (QTL RSS mode, from +# qtl_sumstats_construct.R): SuSiE-RSS over a +# cis window using the collection's ldSketch # --gwas-sumstats pecotmr::GwasSumStats (per LD block, # typically from gwas_sumstats_construct.R) # @@ -64,6 +67,9 @@ parser <- add_argument(parser, "--qtl-dataset", parser <- add_argument(parser, "--gwas-sumstats", help = "Path to a GwasSumStats RDS (GWAS mode)", type = "character", default = "") +parser <- add_argument(parser, "--qtl-sumstats", + help = "Path to a QtlSumStats RDS (QTL RSS mode; from qtl_sumstats_construct.R)", + type = "character", default = "") parser <- add_argument(parser, "--gene-id", help = "Trait identifier (QTL gene mode); mutually exclusive with --region", type = "character", default = "") @@ -275,10 +281,11 @@ if (!is.null(seed_val)) set.seed(seed_val) has_qtl <- nzchar(argv$qtl_dataset) has_gwas <- nzchar(argv$gwas_sumstats) -if (has_qtl && has_gwas) - stop("--qtl-dataset and --gwas-sumstats are mutually exclusive; pass exactly one.") -if (!has_qtl && !has_gwas) - stop("Specify either --qtl-dataset (QTL mode) or --gwas-sumstats (GWAS mode).") +has_qss <- nzchar(argv$qtl_sumstats) +if (sum(has_qtl, has_gwas, has_qss) > 1L) + stop("--qtl-dataset, --gwas-sumstats and --qtl-sumstats are mutually exclusive; pass exactly one.") +if (!has_qtl && !has_gwas && !has_qss) + stop("Specify --qtl-dataset (QTL individual-level), --qtl-sumstats (QTL RSS) or --gwas-sumstats (GWAS RSS).") # Optional context restriction (QTL mode): NULL = all contexts in the dataset. contexts_arg <- if (nzchar(argv$contexts) && argv$contexts != ".") @@ -336,9 +343,12 @@ if (!is.null(median_abs_corr)) cs_args$medianAbsCorr <- median_abs_corr # fineMappingResult). Added only when supplied, for pecotmr-version tolerance. if (!is.null(fmr_obj)) cs_args$fineMappingResult <- fmr_obj -if (has_gwas) { - # ----- GWAS mode ------------------------------------------------------- - gss <- readRDS(argv$gwas_sumstats) +if (has_gwas || has_qss) { + # ----- RSS mode (GwasSumStats or QtlSumStats) -------------------------- + # The SuSiE-RSS knobs below are pipeline arguments of the summary-statistics + # path, which pecotmr documents as "QtlSumStats / GwasSumStats only", so the + # two RSS inputs share this branch; fineMappingPipeline dispatches on class. + gss <- readRDS(if (has_gwas) argv$gwas_sumstats else argv$qtl_sumstats) ser_fallback <- as.logical(argv$ser_fallback) if (is.na(ser_fallback)) stop("--ser-fallback must be TRUE or FALSE (got: ", argv$ser_fallback, ")") @@ -368,8 +378,10 @@ if (has_gwas) { '\'{"check_prior":true,"mismatch_estimator":"map"}\'.') gwas_args$rssControl <- rc } + if (!is.null(seed_val)) gwas_args$seed <- seed_val res <- do.call(fineMappingPipeline, c(list(gss), gwas_args)) - label <- paste0("GwasSumStats '", basename(argv$gwas_sumstats), "'") + label <- if (has_gwas) paste0("GwasSumStats '", basename(argv$gwas_sumstats), "'") + else paste0("QtlSumStats '", basename(argv$qtl_sumstats), "'") } else { # ----- QTL mode -------------------------------------------------------- has_gene <- nzchar(argv$gene_id) diff --git a/code/script/pecotmr_integration/qtl_sumstats_construct.R b/code/script/pecotmr_integration/qtl_sumstats_construct.R new file mode 100755 index 000000000..4b8e4a5c8 --- /dev/null +++ b/code/script/pecotmr_integration/qtl_sumstats_construct.R @@ -0,0 +1,117 @@ +#!/usr/bin/env Rscript +# ============================================================ +# qtl_sumstats_construct.R +# Standalone CLI worker for qtl_rss_analysis.ipynb [generate_qtl_sumstats]. +# +# Builds one `pecotmr::QtlSumStats` per (study, context, trait) from a cis-QTL +# nominal association table, attaches an LD reference panel as the ldSketch and +# runs `summaryStatsQc()`. The result is the summary-statistics counterpart of a +# QtlDataset: everything downstream (RSS fine-mapping, RSS TWAS weights) reads +# it instead of individual-level genotypes. +# +# This is the QTL sibling of gwas_sumstats_construct.R and is just as thin: +# pecotmr's loadQtlSumStatsFromManifest() does the reading, column resolution, +# trait/region restriction and construction; summaryStatsQc() does the QC. +# +# Two details of a cis-QTL scan that the loader is told about explicitly: +# --trait-column the scan writes EVERY gene into one table, so the rows +# for this trait are selected by that column. (Region +# restriction cannot do it: neighbouring cis windows +# overlap, and it needs a tabix index besides.) +# --variant-id-alleles the scan reports effect + se against the counted +# allele and leaves the alleles inside the variant id. +# The order within an id cannot be recovered from the +# string -- a .pvar writes REF:ALT (pecotmr's canonical +# A2:A1) while a PLINK .bim writes A1:A2 -- so declare +# which one this file uses. Declaring it wrong is +# SILENT: summaryStatsQc() "corrects" the apparent +# mismatch by sign- and strand-flipping every variant +# against the panel. A real A1/A2 column always wins. +# ============================================================ + +suppressPackageStartupMessages({ + library(argparser) + library(pecotmr) +}) + +parser <- arg_parser("Build a QtlSumStats (+ LD sketch, + QC) from a cis-QTL nominal table") +parser <- add_argument(parser, "--sumstats", type = "character", default = "", + help = "cis-QTL nominal association table (TensorQTL *.cis_qtl.pairs.tsv.gz)") +parser <- add_argument(parser, "--study", type = "character", default = "", + help = "Study label") +parser <- add_argument(parser, "--context", type = "character", default = "", + help = "Context (condition/tissue) label") +parser <- add_argument(parser, "--trait", type = "character", default = "", + help = "Trait (gene) id") +parser <- add_argument(parser, "--trait-column", type = "character", default = "molecular_trait_id", + help = "Column naming each row's trait; empty disables the filter (single-trait file)") +parser <- add_argument(parser, "--variant-id-alleles", type = "character", default = "none", + help = "Where the alleles live when there is no A1/A2 column: none | A2A1 | A1A2") +parser <- add_argument(parser, "--ld-sketch", type = "character", default = "", + help = "LD reference panel: a genotype path/prefix, or a per-chromosome LD meta file") +parser <- add_argument(parser, "--genome", type = "character", default = "GRCh38", + help = "Genome build recorded on the collection") +parser <- add_argument(parser, "--region", type = "character", default = "", + help = "Optional chr:start-end restriction (needs a tabix-indexed sumstats file)") +parser <- add_argument(parser, "--n-sample", type = "numeric", default = NA, + help = "Study-level total N, used when the file has no per-variant N column") +parser <- add_argument(parser, "--column-mapping", type = "character", default = "", + help = "Optional column-mapping YAML for non-standard source column names") +parser <- add_argument(parser, "--maf", type = "numeric", default = 0, + help = "summaryStatsQc mafCutoff (study and LD panel)") +parser <- add_argument(parser, "--mac", type = "numeric", default = 0, + help = "summaryStatsQc macCutoff") +parser <- add_argument(parser, "--imiss", type = "numeric", default = 1, + help = "summaryStatsQc imissCutoff") +parser <- add_argument(parser, "--z-mismatch-qc", type = "character", default = "none", + help = "summaryStatsQc zMismatchQc: none | slalom | dentist") +parser <- add_argument(parser, "--pip-cutoff-to-skip", type = "numeric", default = 0, + help = "summaryStatsQc pipCutoffToSkip; 0 = off") +parser <- add_argument(parser, "--skip-qc", flag = TRUE, + help = "Serialise the raw QtlSumStats without summaryStatsQc() (diagnostics only)") +parser <- add_argument(parser, "--output", type = "character", default = "", + help = "Output RDS") +argv <- parse_args(parser) + +for (a in c("sumstats", "study", "context", "trait", "ld_sketch", "output")) + if (!nzchar(argv[[a]])) + stop("--", gsub("_", "-", a), " is required") + +# One manifest row per (study, context, trait); the loader takes it from here. +manifest <- data.frame( + study = argv$study, + context = argv$context, + trait = argv$trait, + sumStatsPath = argv$sumstats, + stringsAsFactors = FALSE) +if (nzchar(argv$column_mapping)) manifest$columnMapping <- argv$column_mapping +if (!is.na(argv$n_sample)) manifest$nSample <- argv$n_sample + +qss <- loadQtlSumStatsFromManifest( + manifest = manifest, + genome = argv$genome, + ldSketch = argv$ld_sketch, + region = if (nzchar(argv$region)) argv$region else NULL, + columnMapping = if (nzchar(argv$column_mapping)) argv$column_mapping else NULL, + traitColumn = if (nzchar(argv$trait_column)) argv$trait_column else NULL, + variantIdAlleles = argv$variant_id_alleles) + +out <- if (argv$skip_qc) { + message("--skip-qc set; serialising the raw QtlSumStats without summaryStatsQc().") + qss +} else { + summaryStatsQc(qss, + mafCutoff = argv$maf, + macCutoff = argv$mac, + imissCutoff = argv$imiss, + zMismatchQc = argv$z_mismatch_qc, + pipCutoffToSkip = argv$pip_cutoff_to_skip) +} + +dir.create(dirname(argv$output), showWarnings = FALSE, recursive = TRUE) +saveRDS(out, argv$output, compress = "xz") +cat(sprintf("Wrote QtlSumStats for %s/%s/%s (%d variant(s), LD sketch %s) to %s\n", + argv$study, argv$context, argv$trait, length(out[[1L]]), + if (is.null(getLdSketch(out))) "NULL" else + paste(dim(getLdSketch(out)), collapse = " x "), + argv$output)) diff --git a/code/script/pecotmr_integration/twas_weights.R b/code/script/pecotmr_integration/twas_weights.R index 923c40725..32b4d8aab 100644 --- a/code/script/pecotmr_integration/twas_weights.R +++ b/code/script/pecotmr_integration/twas_weights.R @@ -46,10 +46,13 @@ suppressPackageStartupMessages({ library(jsonlite) }) -parser <- arg_parser("Per-gene or per-region default-preset TWAS weights over a pre-built QtlDataset") +parser <- arg_parser("Per-gene or per-region default-preset TWAS weights over a QtlDataset or QtlSumStats") parser <- add_argument(parser, "--qtl-dataset", - help = "Path to a QtlDataset RDS", - type = "character") + help = "Path to a QtlDataset RDS (individual-level mode)", + type = "character", default = "") +parser <- add_argument(parser, "--qtl-sumstats", + help = "Path to a QtlSumStats RDS (RSS mode; from qtl_sumstats_construct.R). The collection already spans one cis window, so --gene-id / --region do not apply.", + type = "character", default = "") parser <- add_argument(parser, "--gene-id", help = "Trait identifier (gene mode); mutually exclusive with --region", type = "character", default = "") @@ -223,12 +226,24 @@ twas_weights_obj <- if (nzchar(argv$twas_weights) && argv$twas_weights != "." && has_gene <- nzchar(argv$gene_id) has_region <- nzchar(argv$region) -if (has_gene && has_region) - stop("--gene-id and --region are mutually exclusive; pass exactly one.") -if (!has_gene && !has_region) - stop("Specify either --gene-id (with --cis-window) or --region.") +has_qd <- nzchar(argv$qtl_dataset) +has_qss <- nzchar(argv$qtl_sumstats) +if (has_qd && has_qss) + stop("--qtl-dataset and --qtl-sumstats are mutually exclusive; pass exactly one.") +if (!has_qd && !has_qss) + stop("Specify --qtl-dataset (individual-level) or --qtl-sumstats (RSS).") +# A QtlSumStats is already one cis window's worth of variants, so it selects +# nothing further; the individual-level path still needs a trait or a region. +if (has_qss && (has_gene || has_region)) + stop("--gene-id / --region do not apply in RSS mode: a QtlSumStats already spans one window.") +if (has_qd) { + if (has_gene && has_region) + stop("--gene-id and --region are mutually exclusive; pass exactly one.") + if (!has_gene && !has_region) + stop("Specify either --gene-id (with --cis-window) or --region.") +} -qd <- readRDS(argv$qtl_dataset) +qd <- readRDS(if (has_qd) argv$qtl_dataset else argv$qtl_sumstats) fmr_path <- argv$fine_mapping_result fmr <- if (nzchar(fmr_path) && fmr_path != "." && file.exists(fmr_path)) { @@ -255,7 +270,16 @@ tw_args <- c(list(methods = methods_arg, if (!is.null(joint_spec)) tw_args$jointSpecification <- joint_spec if (!is.null(twas_weights_obj)) tw_args$twasWeights <- twas_weights_obj if (!is.null(seed_val)) tw_args$seed <- seed_val -res <- if (has_region) { +res <- if (has_qss) { + # RSS mode: no trait/region selection, and the individual-level-only knobs + # (cisWindow + the genotype filters) do not apply to a summary-statistics + # collection, so only the shared arguments are forwarded. + rss_args <- tw_args[intersect( + names(tw_args), + c("methods", "mashPrior", "contexts", "fineMappingResult", + "jointSpecification", "twasWeights", "seed"))] + do.call(twasWeightsPipeline, c(list(qd), rss_args)) +} else if (has_region) { do.call(twasWeightsPipeline, c(list(qd), tw_args, list(region = argv$region))) } else { @@ -266,6 +290,7 @@ res <- if (has_region) { dir.create(dirname(argv$output), showWarnings = FALSE, recursive = TRUE) saveRDS(res, argv$output) cat(sprintf("Wrote TWAS weights for %s (%d row(s)) to %s\n", - if (has_region) paste0("region '", argv$region, "'") + if (has_qss) paste0("QtlSumStats '", basename(argv$qtl_sumstats), "'") + else if (has_region) paste0("region '", argv$region, "'") else paste0("gene '", argv$gene_id, "'"), nrow(res), argv$output)) diff --git a/pipeline/qtl_rss_analysis.ipynb b/pipeline/qtl_rss_analysis.ipynb new file mode 120000 index 000000000..32efd4308 --- /dev/null +++ b/pipeline/qtl_rss_analysis.ipynb @@ -0,0 +1 @@ +../code/SoS/mnm_analysis/mnm_methods/qtl_rss_analysis.ipynb \ No newline at end of file diff --git a/tests/fixtures/fine_mapping/expected/export_pip.tsv b/tests/fixtures/fine_mapping/expected/export_pip.tsv index d1cc8833a..445189f6e 100644 --- a/tests/fixtures/fine_mapping/expected/export_pip.tsv +++ b/tests/fixtures/fine_mapping/expected/export_pip.tsv @@ -1,401 +1,401 @@ study context trait blockId method variant_id pip source block_id -test_study context1 ENSG00000283047 susie chr22:10414272:A:T 0.0195354920561804 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10416111:A:T 0.020073556407219 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10416669:A:T 0.0310191637339924 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10420511:A:T 0.0201364224047631 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10424460:A:T 0.0260967756677665 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10424703:A:T 0.0206110382551506 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10425071:A:T 0.0196685863644941 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10425470:A:T 0.0206528049824518 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10426294:A:T 0.0200333084690719 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10427068:A:T 0.0205964497576571 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10438124:A:T 0.0196606083994955 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10443846:A:T 0.0280608571551424 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10444153:A:T 0.0203191254024239 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10453438:A:T 0.0234432634242213 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10456378:A:T 0.0251817933401223 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10456420:A:T 0.108165818393474 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10465259:A:T 0.0196450430138724 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10465368:A:T 0.0216505185976748 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10465522:A:T 0.0196943218348984 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10467002:A:T 0.0241349961448402 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10469754:A:T 0.0195300260891038 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10470543:A:T 0.0209964912718783 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10475014:A:T 0.0276230808295465 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10475701:A:T 0.0230536159040262 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10478619:A:T 0.019662444732321 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10479755:A:T 0.0194981543949621 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10481230:A:T 0.0196555289540651 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10486457:A:T 0.0195119159827093 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10486638:A:T 0.0199516637405859 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10491705:A:T 0.021104466010024 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10493851:A:T 0.0200484479850787 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10494665:A:T 0.0198047658573225 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10497299:A:T 0.022699541404084 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10499223:A:T 0.0195004671686453 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10499732:A:T 0.029048396423717 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10500104:A:T 0.0199954088140194 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10500354:A:T 0.0313411219473662 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10502036:A:T 0.0207152116632885 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10506439:A:T 0.0200786188196789 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10507706:A:T 0.0215927013328453 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10509098:A:T 0.0217192703262502 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10519036:A:T 0.0206326902451549 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10519627:A:T 0.0204863269134747 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10521008:A:T 0.0211361394728118 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10525486:A:T 0.0212029068816254 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10525507:A:T 0.0314806954003963 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10526047:A:T 0.022250300447221 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10528275:A:T 0.0197524402274093 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10528863:A:T 0.0655240321637635 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10529203:A:T 0.0206001265412102 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10529629:A:T 0.0348945872620186 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10532120:A:T 0.0214426850459805 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10534681:A:T 0.0245136593806096 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10536789:A:T 0.0319305703531805 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10540221:A:T 0.0317807312913893 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10542264:A:T 0.022579405560768 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10544529:A:T 0.028316756173042 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10546683:A:T 0.0301930062946671 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10552638:A:T 0.0376477902605061 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10555952:A:T 0.02029576426978 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10556391:A:T 0.0199537918812016 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10557763:A:T 0.0206932434103213 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10559814:A:T 0.0198173160354894 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10562607:A:T 0.0230618063233545 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10567672:A:T 0.0197215400406378 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10573130:A:T 0.0202718873673351 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10574455:A:T 0.0284434879198567 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10577070:A:T 0.0537130303297024 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10579383:A:T 0.0213123600172846 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10580355:A:T 0.0259544896977281 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10580442:A:T 0.0228456538664735 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10581284:A:T 0.026121664600086 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10588433:A:T 0.0381069787348025 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10588553:A:T 0.0283738826789801 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10588781:A:T 0.019758029038018 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10592697:A:T 0.0391632470770228 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10596659:A:T 0.0197077407132303 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10598564:A:T 0.0202044384752342 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10603496:A:T 0.0208943902212543 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10606036:A:T 0.0211360365213539 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10608228:A:T 0.0208461386081147 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10610284:A:T 0.0259462061878831 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10610830:A:T 0.0267737015417846 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10610843:A:T 0.0209750825043401 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10612814:A:T 0.0200841080951339 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10616762:A:T 0.049575650363635 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10618998:A:T 0.0405064206073906 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10623771:A:T 0.0269337232964656 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10629671:A:T 0.019492195822338 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10630095:A:T 0.0221899372775474 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10632977:A:T 0.0355028245024768 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10633568:A:T 0.0253971893983137 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10633778:A:T 0.0195918796504023 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10634174:A:T 0.0308489492770808 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10636554:A:T 0.0231743762710905 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10637126:A:T 0.029769984719865 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10637834:A:T 0.0195042362015413 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10643179:A:T 0.0244259957159919 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10645758:A:T 0.0195690949327988 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10646447:A:T 0.0390115727275423 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10651999:A:T 0.0195108060382854 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10653467:A:T 0.0208731150939733 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10656033:A:T 0.034098415332956 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10656463:A:T 0.0226946125850054 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10656692:A:T 0.0237291280316401 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10658132:A:T 0.0194875395308967 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10659633:A:T 0.0209079742654605 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10661938:A:T 0.0202140655404763 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10662883:A:T 0.0195234039437191 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10664101:A:T 0.0195343818979657 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10666159:A:T 0.0203080799463297 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10666369:A:T 0.0194816724436928 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10667183:A:T 0.0206502615652461 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10670967:A:T 0.0214956249262619 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10671410:A:T 0.0222179646202754 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10674639:A:T 0.0281773962576177 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10676894:A:T 0.0218427768984119 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10677327:A:T 0.0224090198740158 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10682445:A:T 0.0216279504304798 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10682474:A:T 0.020582792159993 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10683073:A:T 0.0340319883670385 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10689363:A:T 0.0217263840802983 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10691141:A:T 0.019888279111982 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10692359:A:T 0.0293647992094722 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10697350:A:T 0.0214239108222973 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10698587:A:T 0.0228395784649809 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10703176:A:T 0.0196175840787756 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10705627:A:T 0.0196859717330795 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10710822:A:T 0.0215968315283632 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10712984:A:T 0.0194990222728258 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10714851:A:T 0.0206114722323969 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10725148:A:T 0.0203085900814648 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10727419:A:T 0.0208465618927033 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10730495:A:T 0.0280045742851213 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10732634:A:T 0.0322886278973495 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10733083:A:T 0.0199602730448895 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10735386:A:T 0.0234483893381409 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10735420:A:T 0.0204151085486399 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10737524:A:T 0.0267508452199371 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10742047:A:T 0.0233316703664057 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10746455:A:T 0.0344340709068404 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10757405:A:T 0.0213531754363128 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10761055:A:T 0.0417943362506098 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10761283:A:T 0.0204916157976526 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10762562:A:T 0.0235385720159753 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10764432:A:T 0.0197825110157297 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10764521:A:T 0.0203434447606584 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10773150:A:T 0.0195685164870389 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10775731:A:T 0.020048243426728 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10780593:A:T 0.020551342006887 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10786551:A:T 0.0198314180922898 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10788473:A:T 0.030462701776212 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10791509:A:T 0.0296648559310061 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10793469:A:T 0.0401271955415131 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10798741:A:T 0.0217698443535626 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10799206:A:T 0.019533657776071 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10802154:A:T 0.0207077380622244 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10812259:A:T 0.0212850686015515 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10824509:A:T 0.0202547419299574 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10824856:A:T 0.0506144888969432 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10828045:A:T 0.0289673435789919 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10832058:A:T 0.0213877755380645 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10832995:A:T 0.0199036782652328 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10833119:A:T 0.0234595070981362 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10836135:A:T 0.0229795988668535 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10836569:A:T 0.0195196089735842 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10838751:A:T 0.0219491559695304 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10840270:A:T 0.021979144631571 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10844706:A:T 0.0200859936156614 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10845699:A:T 0.0250555572245555 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10847565:A:T 0.0283569149500341 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10855119:A:T 0.0200845002721118 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10861184:A:T 0.0294868960797596 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10864195:A:T 0.0196304780901325 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10864324:A:T 0.0228736851805423 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10864947:A:T 0.0196036913488391 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10865177:A:T 0.0195893567323883 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10866468:A:T 0.0255140518673524 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10869245:A:T 0.0197185099082037 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10873502:A:T 0.0283986716321912 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10875136:A:T 0.0492239541893592 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10876397:A:T 0.0223456471742464 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10879323:A:T 0.0203800473968279 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10879425:A:T 0.0291744418982446 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10880173:A:T 0.0221386448831214 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10885622:A:T 0.020329007714979 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10885916:A:T 0.0198528235011618 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10888434:A:T 0.0196446935650014 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10889177:A:T 0.0397650380366368 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10889662:A:T 0.0220259664162838 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10889761:A:T 0.0206724948310281 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10890651:A:T 0.0197044960657717 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10894169:A:T 0.0275997043307297 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10896743:A:T 0.0276503625324936 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10897257:A:T 0.020553099998091 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10901738:A:T 0.0196922752458754 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10907041:A:T 0.0231885488677301 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10909660:A:T 0.0230740912371675 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10909667:A:T 0.0349927358559617 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10913450:A:T 0.0199163936394767 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10414272:A:T 0.0222132309998586 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10416111:A:T 0.0232697476617787 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10416669:A:T 0.0305215703602975 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10420511:A:T 0.0220049425386445 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10424460:A:T 0.0338017257780278 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10424703:A:T 0.021932026083324 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10425071:A:T 0.0193642697817763 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10425470:A:T 0.0202441223802096 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10426294:A:T 0.0196519645212651 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10427068:A:T 0.0195127768094481 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10438124:A:T 0.0252499649609901 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10443846:A:T 0.0203040865133962 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10444153:A:T 0.0226071492946136 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10453438:A:T 0.0201146059099291 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10456378:A:T 0.0342959369157481 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10456420:A:T 0.0797866232596487 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10465259:A:T 0.0204530326851395 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10465368:A:T 0.020693782897338 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10465522:A:T 0.020143911837793 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10467002:A:T 0.0253242379696469 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10469754:A:T 0.0196530017444382 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10470543:A:T 0.0240211446576972 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10475014:A:T 0.032949418935353 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10475701:A:T 0.0194099048440415 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10478619:A:T 0.0195894593614865 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10479755:A:T 0.0249615011989139 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10481230:A:T 0.0195069162501851 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10486457:A:T 0.0209079547468223 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10486638:A:T 0.0199113807052124 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10491705:A:T 0.0202733177120042 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10493851:A:T 0.0195742643279995 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10494665:A:T 0.0196602124471549 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10497299:A:T 0.0239356765566737 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10499223:A:T 0.0193697717516598 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10499732:A:T 0.0222107182389899 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10500104:A:T 0.0197210960572423 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10500354:A:T 0.0318178375852366 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10502036:A:T 0.0223192209157416 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10506439:A:T 0.0207102210947178 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10507706:A:T 0.0262747314923751 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10509098:A:T 0.0195254824892642 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10519036:A:T 0.0194007548725494 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10519627:A:T 0.0206641611089537 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10521008:A:T 0.0211516646804152 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10525486:A:T 0.0201864699924171 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10525507:A:T 0.0306262618952563 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10526047:A:T 0.0196484026280365 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10528275:A:T 0.0198279544617923 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10528863:A:T 0.02823765888442 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10529203:A:T 0.0200947621557871 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10529629:A:T 0.0312345791880136 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10532120:A:T 0.0194056035594149 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10534681:A:T 0.0218233767444995 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10536789:A:T 0.034336296396861 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10540221:A:T 0.022626335251014 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10542264:A:T 0.0283658289281554 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10544529:A:T 0.0199532600511451 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10546683:A:T 0.0299082564663098 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10552638:A:T 0.0292329325268286 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10555952:A:T 0.0193594651800134 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10556391:A:T 0.0205739773740432 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10557763:A:T 0.0213626252754696 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10559814:A:T 0.0219434333956205 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10562607:A:T 0.0262309635126886 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10567672:A:T 0.0245247251564663 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10573130:A:T 0.0193619331909514 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10574455:A:T 0.029033131277926 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10577070:A:T 0.0713801744694333 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10579383:A:T 0.0195635785193237 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10580355:A:T 0.0258467434339743 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10580442:A:T 0.0214974684656415 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10581284:A:T 0.0485909672074237 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10588433:A:T 0.0478004023827058 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10588553:A:T 0.0235477164107052 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10588781:A:T 0.0219048423981457 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10592697:A:T 0.0422404627268572 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10596659:A:T 0.019530017487607 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10598564:A:T 0.0194648435419349 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10603496:A:T 0.0221458368470363 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10606036:A:T 0.0216441308250184 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10608228:A:T 0.0194360193441355 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10610284:A:T 0.030977642813638 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10610830:A:T 0.0370154807427632 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10610843:A:T 0.0196654671027577 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10612814:A:T 0.0203621646070477 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10616762:A:T 0.030082623866831 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10618998:A:T 0.0578187164721793 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10623771:A:T 0.0283207961904658 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10629671:A:T 0.0216451044696642 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10630095:A:T 0.0219525208122646 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10632977:A:T 0.0240053612668061 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10633568:A:T 0.0334360864767465 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10633778:A:T 0.0196765554363009 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10634174:A:T 0.024538490764438 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10636554:A:T 0.0358544872403955 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10637126:A:T 0.0264624570510671 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10637834:A:T 0.0195089428285734 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10643179:A:T 0.0220045626605707 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10645758:A:T 0.0249519052769753 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10646447:A:T 0.0263556189010039 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10651999:A:T 0.019389934814125 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10653467:A:T 0.0215695570880229 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10656033:A:T 0.0600235016622045 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10656463:A:T 0.0193592281524402 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10656692:A:T 0.0193970247728052 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10658132:A:T 0.0193677016336202 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10659633:A:T 0.0207946049517018 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10661938:A:T 0.0216121404955965 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10662883:A:T 0.0198280996811681 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10664101:A:T 0.0214173333150066 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10666159:A:T 0.0197626831292598 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10666369:A:T 0.0211833548524851 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10667183:A:T 0.020513452998345 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10670967:A:T 0.0282063737208097 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10671410:A:T 0.0210072269879522 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10674639:A:T 0.0280213328817726 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10676894:A:T 0.0197218710246955 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10677327:A:T 0.0252694026001131 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10682445:A:T 0.0255461371038576 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10682474:A:T 0.019362096614726 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10683073:A:T 0.0220150421413005 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10689363:A:T 0.0201615690212552 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10691141:A:T 0.025959201681768 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10692359:A:T 0.0288588466265368 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10697350:A:T 0.0205707716088578 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10698587:A:T 0.0258454408114108 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10703176:A:T 0.0255215669758887 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10705627:A:T 0.022252135443542 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10710822:A:T 0.0196408645989883 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10712984:A:T 0.0193864216324927 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10714851:A:T 0.0204544933065695 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10725148:A:T 0.0194472574726996 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10727419:A:T 0.0226891057350707 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10730495:A:T 0.0229777776513406 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10732634:A:T 0.0213931337799201 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10733083:A:T 0.0196385937286007 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10735386:A:T 0.0315666578905831 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10735420:A:T 0.0193637244000949 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10737524:A:T 0.0277606442836863 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10742047:A:T 0.0194300627410058 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10746455:A:T 0.0261407591636431 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10757405:A:T 0.0213938141202347 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10761055:A:T 0.0376649836713511 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10761283:A:T 0.0243462600997078 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10762562:A:T 0.019904965255228 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10764432:A:T 0.0201970707463245 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10764521:A:T 0.0294409044947369 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10773150:A:T 0.0215583563133116 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10775731:A:T 0.0221001240746014 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10780593:A:T 0.0199128106329565 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10786551:A:T 0.0196936442404505 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10788473:A:T 0.030223473895979 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10791509:A:T 0.037310257651143 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10793469:A:T 0.0339036898957201 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10798741:A:T 0.0193793924836597 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10799206:A:T 0.019609723177379 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10802154:A:T 0.0202555481987873 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10812259:A:T 0.0287059828106061 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10824509:A:T 0.0203593502642769 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10824856:A:T 0.044994677767457 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10828045:A:T 0.019360166414669 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10832058:A:T 0.0343570140817511 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10832995:A:T 0.0194528082798275 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10833119:A:T 0.0214250154002512 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10836135:A:T 0.019398409545788 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10836569:A:T 0.0193800733622388 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10838751:A:T 0.0202161819761566 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10840270:A:T 0.0275883727362123 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10844706:A:T 0.0217746808589072 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10845699:A:T 0.0222856616689123 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10847565:A:T 0.02806671050749 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10855119:A:T 0.0193589501397413 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10861184:A:T 0.025371888547301 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10864195:A:T 0.0195026851234197 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10864324:A:T 0.0195611061309888 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10864947:A:T 0.0208104050609855 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10865177:A:T 0.0209220502822121 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10866468:A:T 0.022291497233378 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10869245:A:T 0.0195877231884075 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10873502:A:T 0.02229020610666 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10875136:A:T 0.0234706127988181 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10876397:A:T 0.0225513790010636 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10879323:A:T 0.0216336873857719 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10879425:A:T 0.0562175302493262 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10880173:A:T 0.0194642553081967 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10885622:A:T 0.0199616093168357 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10885916:A:T 0.023023887057392 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10888434:A:T 0.0194222814370877 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10889177:A:T 0.0301980000338244 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10889662:A:T 0.0243465592214346 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10889761:A:T 0.020590441235766 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10890651:A:T 0.0193773916483668 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10894169:A:T 0.0251373938662744 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10896743:A:T 0.0200762883680375 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10897257:A:T 0.0255004585362545 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10901738:A:T 0.021800784727605 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10907041:A:T 0.0264253945155558 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10909660:A:T 0.029721736375359 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10909667:A:T 0.033141105027137 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10913450:A:T 0.0195594077457434 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10414272:A:T 0.0422294340699407 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10416111:A:T 0.0429959514556101 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10416669:A:T 0.0572662323766142 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10420511:A:T 0.0430833180523028 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10424460:A:T 0.0509871325158945 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10424703:A:T 0.0436786644721743 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10425071:A:T 0.0424332092508124 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10425470:A:T 0.0437519315097458 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10426294:A:T 0.0429608247117984 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10427068:A:T 0.0437797537086477 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10438124:A:T 0.0424418162462679 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10443846:A:T 0.0536576698659246 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10444153:A:T 0.043412398715128 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10453438:A:T 0.0476595766927019 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10456378:A:T 0.0499323675029959 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10456420:A:T 0.131405479675753 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10465259:A:T 0.0424070246924617 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10465368:A:T 0.045187646683033 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10465522:A:T 0.0424816504791944 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10467002:A:T 0.0485958802525648 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10469754:A:T 0.0422523706114409 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10470543:A:T 0.044358186005038 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10475014:A:T 0.0529499666956926 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10475701:A:T 0.0471908432804908 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10478619:A:T 0.0424507896951674 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10479755:A:T 0.0421962824814047 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10481230:A:T 0.0424270277187633 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10486457:A:T 0.0422076024139685 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10486638:A:T 0.0427862912492463 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10491705:A:T 0.0445194925454182 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10493851:A:T 0.0430144914200165 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10494665:A:T 0.0426311917960731 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10497299:A:T 0.0465843533490821 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10499223:A:T 0.042208992072167 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10499732:A:T 0.0549406765215563 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10500104:A:T 0.0429006354066866 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10500354:A:T 0.0575866551835745 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10502036:A:T 0.0440242872142022 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10506439:A:T 0.0429811708425872 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10507706:A:T 0.0452223946872833 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10509098:A:T 0.0453627115577616 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10519036:A:T 0.0437688063160109 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10519627:A:T 0.0436524309252031 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10521008:A:T 0.0445493968584518 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10525486:A:T 0.0446034922797774 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10525507:A:T 0.0579845711018788 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10526047:A:T 0.0461829610339277 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10528275:A:T 0.0425585153936261 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10528863:A:T 0.0941193452830942 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10529203:A:T 0.0436888359540337 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10529629:A:T 0.0617779011616739 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10532120:A:T 0.0450234572323724 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10534681:A:T 0.049050748796807 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10536789:A:T 0.0585142702856675 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10540221:A:T 0.0584530837535193 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10542264:A:T 0.0465125620397847 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10544529:A:T 0.0542046624626997 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10546683:A:T 0.0564502588352989 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10552638:A:T 0.065177649042568 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10555952:A:T 0.0433126081451954 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10556391:A:T 0.0428808395072913 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10557763:A:T 0.043919708793878 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10559814:A:T 0.0426335846469253 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10562607:A:T 0.0471963617906871 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10567672:A:T 0.0425225179095629 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10573130:A:T 0.0433452433597391 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10574455:A:T 0.053836614841723 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10577070:A:T 0.0818534475599002 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10579383:A:T 0.0447546400501674 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10580355:A:T 0.0509509774372955 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10580442:A:T 0.0469518207412428 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10581284:A:T 0.0510764395878233 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10588433:A:T 0.0654141017146013 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10588553:A:T 0.0541055666799988 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10588781:A:T 0.042541927862986 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10592697:A:T 0.0666244756324671 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10596659:A:T 0.042460469313863 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10598564:A:T 0.0432160319456578 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10603496:A:T 0.0441498348259046 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10606036:A:T 0.0446301800189158 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10608228:A:T 0.0440560898552661 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10610284:A:T 0.0511155297298096 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10610830:A:T 0.0520376644670131 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10610843:A:T 0.0442711837944242 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10612814:A:T 0.043099455219085 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10616762:A:T 0.0776880831190707 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10618998:A:T 0.0687331293179465 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10623771:A:T 0.052234788926145 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10629671:A:T 0.0421889559694912 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10630095:A:T 0.0460030115195499 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10632977:A:T 0.0624496598308748 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10633568:A:T 0.0501782625051638 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10633778:A:T 0.042332231127818 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10634174:A:T 0.0573200094691056 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10636554:A:T 0.0473430220438932 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10637126:A:T 0.0553776553053907 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10637834:A:T 0.0422091211151668 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10643179:A:T 0.049138388201129 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10645758:A:T 0.0423025714008126 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10646447:A:T 0.0671115763428368 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10651999:A:T 0.0422187809539599 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10653467:A:T 0.044056328699644 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10656033:A:T 0.0609204385881633 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10656463:A:T 0.0465858328983842 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10656692:A:T 0.0479494225915766 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10658132:A:T 0.0421833297554859 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10659633:A:T 0.0442110796531038 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10661938:A:T 0.0432130771351058 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10662883:A:T 0.0422349984707191 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10664101:A:T 0.0422445789876031 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10666159:A:T 0.0433765499155419 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10666369:A:T 0.0421755141525338 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10667183:A:T 0.0438859930319273 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10670967:A:T 0.0450614096156899 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10671410:A:T 0.0459603582574175 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10674639:A:T 0.053808967857617 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10676894:A:T 0.0454670630623942 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10677327:A:T 0.046217665478046 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10682445:A:T 0.0451998793502214 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10682474:A:T 0.0436776724043451 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10683073:A:T 0.0608209759812777 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10689363:A:T 0.0453326042427713 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10691141:A:T 0.0428039820680154 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10692359:A:T 0.0552669147832231 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10697350:A:T 0.0450025992638295 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10698587:A:T 0.046801968257233 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10703176:A:T 0.0423773139427249 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10705627:A:T 0.0424687706953297 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10710822:A:T 0.0450110722974166 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10712984:A:T 0.0421958910648751 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10714851:A:T 0.0437043698668609 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10725148:A:T 0.0433917575478022 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10727419:A:T 0.0440771108087533 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10730495:A:T 0.053613787938292 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10732634:A:T 0.0586140352099588 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10733083:A:T 0.0428557065269207 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10735386:A:T 0.0474833709170256 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10735420:A:T 0.0435137626011634 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10737524:A:T 0.0520715924274914 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10742047:A:T 0.0476680475832857 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10746455:A:T 0.0611612358392535 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10757405:A:T 0.0447479087981055 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10761055:A:T 0.0696398306277136 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10761283:A:T 0.0436300523023708 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10762562:A:T 0.0479391157889577 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10764432:A:T 0.0426328845691886 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10764521:A:T 0.0433405457432013 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10773150:A:T 0.0422794864695721 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10775731:A:T 0.0429937180920675 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10780593:A:T 0.0436686208480915 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10786551:A:T 0.0426814227504108 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10788473:A:T 0.056816509003515 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10791509:A:T 0.0556806396078031 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10793469:A:T 0.0681281736525896 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10798741:A:T 0.0453769757617304 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10799206:A:T 0.0422509552946314 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10802154:A:T 0.0440066624468618 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10812259:A:T 0.0447363199219433 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10824509:A:T 0.0432689067847559 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10824856:A:T 0.0789761370990545 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10828045:A:T 0.0546853113209282 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10832058:A:T 0.0448252773056826 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10832995:A:T 0.0428068007337628 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10833119:A:T 0.0477328896501888 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10836135:A:T 0.0470773012385791 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10836569:A:T 0.0422252364284976 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10838751:A:T 0.0456152681200251 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10840270:A:T 0.0457010294910127 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10844706:A:T 0.0430013253645297 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10845699:A:T 0.0498641589561024 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10847565:A:T 0.0538165161802283 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10855119:A:T 0.0429712016015804 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10861184:A:T 0.0554287454799245 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10864195:A:T 0.0423855545371231 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10864324:A:T 0.0468301218046595 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10864947:A:T 0.0423231631455524 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10865177:A:T 0.0423171383305246 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10866468:A:T 0.0506332282744146 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10869245:A:T 0.0425252588912889 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10873502:A:T 0.054103362645797 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10875136:A:T 0.0775553755831844 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10876397:A:T 0.0462357578312531 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10879323:A:T 0.0433988135137394 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10879425:A:T 0.05490774831275 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10880173:A:T 0.0458996358339501 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10885622:A:T 0.0434305673583816 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10885916:A:T 0.0427073734145325 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10888434:A:T 0.0423983513356766 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10889177:A:T 0.0678331623923326 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10889662:A:T 0.045713215990865 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10889761:A:T 0.0439098637794354 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10890651:A:T 0.0425268885599457 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10894169:A:T 0.0530657997666567 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10896743:A:T 0.0529892441443529 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10897257:A:T 0.0436224994665421 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10901738:A:T 0.0424847084885055 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10907041:A:T 0.0472811113189311 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10909660:A:T 0.0473782630843457 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10909667:A:T 0.0619946751390873 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10913450:A:T 0.0428142479110751 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10414272:A:T 0.045495552611159 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10416111:A:T 0.0471717063294906 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10416669:A:T 0.0572317986237603 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10420511:A:T 0.0453871849541106 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10424460:A:T 0.0608104356707363 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10424703:A:T 0.0452540332370842 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10425071:A:T 0.0415902016500135 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10425470:A:T 0.042982995468115 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10426294:A:T 0.0420265350176584 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10427068:A:T 0.0418130147661726 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10438124:A:T 0.0501173174791727 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10443846:A:T 0.0430220899356523 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10444153:A:T 0.0464194540670646 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10453438:A:T 0.0426935719665387 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10456378:A:T 0.0618202982537472 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10456420:A:T 0.111377143390281 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10465259:A:T 0.0432309366240504 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10465368:A:T 0.0435682039365906 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10465522:A:T 0.0427241819916151 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10467002:A:T 0.0503793873634494 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10469754:A:T 0.0420534636765117 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10470543:A:T 0.0484533266304741 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10475014:A:T 0.0599644438187753 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10475701:A:T 0.0416720616594177 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10478619:A:T 0.0419378663083032 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10479755:A:T 0.0496331451246331 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10481230:A:T 0.0417951758089327 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10486457:A:T 0.0437460219065736 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10486638:A:T 0.0423684720047495 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10491705:A:T 0.0429479269025931 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10493851:A:T 0.0419131399856448 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10494665:A:T 0.0420511259038754 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10497299:A:T 0.0481106002700656 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10499223:A:T 0.041601828180566 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10499732:A:T 0.0457539884594679 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10500104:A:T 0.0421955151583119 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10500354:A:T 0.0585566068682646 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10502036:A:T 0.0461708399560533 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10506439:A:T 0.0436315004473874 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10507706:A:T 0.0515387360543875 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10509098:A:T 0.041837959046939 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10519036:A:T 0.0416366282188961 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10519627:A:T 0.0435638054192353 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10521008:A:T 0.0443122426551077 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10525486:A:T 0.0428487289723334 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10525507:A:T 0.05704235156879 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10526047:A:T 0.0419668776529468 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10528275:A:T 0.0422899884450207 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10528863:A:T 0.0541138077589989 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10529203:A:T 0.042714620270542 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10529629:A:T 0.0578462677792674 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10532120:A:T 0.0416737932229473 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10534681:A:T 0.0452379201626746 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10536789:A:T 0.0618439712563271 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10540221:A:T 0.0464618430119641 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10542264:A:T 0.0541350867600218 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10544529:A:T 0.0425724222605162 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10546683:A:T 0.05647518196527 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10552638:A:T 0.0554876582895619 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10555952:A:T 0.0415870903000211 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10556391:A:T 0.0433654538363081 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10557763:A:T 0.044562883113724 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10559814:A:T 0.0453407787108971 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10562607:A:T 0.0513740061285208 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10567672:A:T 0.0489706012644731 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10573130:A:T 0.0415870603757502 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10574455:A:T 0.0547158127777185 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10577070:A:T 0.102399323757615 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10579383:A:T 0.0419049316747562 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10580355:A:T 0.0509417984218314 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10580442:A:T 0.0447648093408959 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10581284:A:T 0.0790310621129254 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10588433:A:T 0.0775834673456196 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10588553:A:T 0.0477103212906445 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10588781:A:T 0.0452884415582818 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10592697:A:T 0.071321274244225 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10596659:A:T 0.0417956727272573 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10598564:A:T 0.0417447443568867 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10603496:A:T 0.0456850317835302 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10606036:A:T 0.0449859388414066 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10608228:A:T 0.0417172776006584 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10610284:A:T 0.0577857928511253 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10610830:A:T 0.0653593138683441 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10610843:A:T 0.0420187296510078 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10612814:A:T 0.0431814917050212 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10616762:A:T 0.0564617176054896 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10618998:A:T 0.0899594419987451 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10623771:A:T 0.0541104138954055 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10629671:A:T 0.0449916596803094 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10630095:A:T 0.0454776302157857 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10632977:A:T 0.0482310156261627 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10633568:A:T 0.0604678826437809 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10633778:A:T 0.0420635335559686 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10634174:A:T 0.0492357585197782 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10636554:A:T 0.0640790361004835 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10637126:A:T 0.0514665651289743 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10637834:A:T 0.0418030266099026 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10643179:A:T 0.0456733124284865 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10645758:A:T 0.0497114384911225 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10646447:A:T 0.0519071314804118 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10651999:A:T 0.041627885340302 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10653467:A:T 0.0446598537253279 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10656033:A:T 0.0912008695412238 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10656463:A:T 0.0415862960427144 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10656692:A:T 0.0416541180176772 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10658132:A:T 0.0416000316457208 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10659633:A:T 0.043718895074612 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10661938:A:T 0.0448481585373752 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10662883:A:T 0.0422995096373422 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10664101:A:T 0.0446076695378759 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10666159:A:T 0.0421582014338068 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10666369:A:T 0.0443967636365794 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10667183:A:T 0.0432302128730966 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10670967:A:T 0.0544179326952402 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10671410:A:T 0.0439795690696133 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10674639:A:T 0.0538703641118982 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10676894:A:T 0.0421279476669252 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10677327:A:T 0.0500516469344687 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10682445:A:T 0.0504474605568473 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10682474:A:T 0.0415981605044327 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10683073:A:T 0.0454512547209841 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10689363:A:T 0.0427438104583896 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10691141:A:T 0.0508415209435655 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10692359:A:T 0.0549290819236319 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10697350:A:T 0.0434878091299024 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10698587:A:T 0.0506993980487962 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10703176:A:T 0.050310272549183 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10705627:A:T 0.0458928685409377 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10710822:A:T 0.0420941395232302 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10712984:A:T 0.0416261629343637 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10714851:A:T 0.0433283563332849 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10725148:A:T 0.0417052311805843 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10727419:A:T 0.0463531355397776 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10730495:A:T 0.0469209166776916 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10732634:A:T 0.0444741216784302 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10733083:A:T 0.0419985196712453 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10735386:A:T 0.0581556275046976 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10735420:A:T 0.041593359139775 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10737524:A:T 0.0535871627132896 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10742047:A:T 0.041670764324487 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10746455:A:T 0.0510981097383385 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10757405:A:T 0.0446244493853021 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10761055:A:T 0.0659261040926479 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10761283:A:T 0.0487425376435224 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10762562:A:T 0.0424167749217323 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10764432:A:T 0.0429012385531842 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10764521:A:T 0.0554399384397845 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10773150:A:T 0.0446233852563629 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10775731:A:T 0.045628524759239 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10780593:A:T 0.0423949965069916 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10786551:A:T 0.0420843510566368 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10788473:A:T 0.0570432394500952 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10791509:A:T 0.0657735491064734 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10793469:A:T 0.0615248126176061 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10798741:A:T 0.0416148038604726 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10799206:A:T 0.0419429242296747 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10802154:A:T 0.0430520859435048 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10812259:A:T 0.0547589776717223 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10824509:A:T 0.0430411861754831 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10824856:A:T 0.0746156081015057 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10828045:A:T 0.0415907531873448 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10832058:A:T 0.0619715254497892 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10832995:A:T 0.0417470562516304 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10833119:A:T 0.0446641124892001 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10836135:A:T 0.0416548371176579 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10836569:A:T 0.0416229522900406 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10838751:A:T 0.0428414167741213 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10840270:A:T 0.0533175049894155 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10844706:A:T 0.0450163539336705 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10845699:A:T 0.0460477962515493 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10847565:A:T 0.0537075172174828 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10855119:A:T 0.0415870467596949 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10861184:A:T 0.0500829153935087 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10864195:A:T 0.0418156445298358 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10864324:A:T 0.0418920570738965 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10864947:A:T 0.0438435697766932 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10865177:A:T 0.0438234143486492 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10866468:A:T 0.0460393625449443 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10869245:A:T 0.0419298782069836 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10873502:A:T 0.0459746278410491 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10875136:A:T 0.0475308638176536 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10876397:A:T 0.0463727149860921 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10879323:A:T 0.0447899893937787 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10879425:A:T 0.0871403215988293 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10880173:A:T 0.0417639748465348 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10885622:A:T 0.0424561146483294 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10885916:A:T 0.0469679988066615 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10888434:A:T 0.0416823914007068 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10889177:A:T 0.0569032827255727 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10889662:A:T 0.0486455703432855 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10889761:A:T 0.0433733745966092 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10890651:A:T 0.0416189576555813 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10894169:A:T 0.0499025020678371 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10896743:A:T 0.0425775430627826 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10897257:A:T 0.0502541632760874 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10901738:A:T 0.0450477336185311 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10907041:A:T 0.0516278857281343 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10909660:A:T 0.0562860672232586 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10909667:A:T 0.0603470183170586 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10913450:A:T 0.0418470170497657 fmr.rds diff --git a/tests/fixtures/fine_mapping/expected/export_topLoci.tsv b/tests/fixtures/fine_mapping/expected/export_topLoci.tsv index eac8fa91d..23afba2d2 100644 --- a/tests/fixtures/fine_mapping/expected/export_topLoci.tsv +++ b/tests/fixtures/fine_mapping/expected/export_topLoci.tsv @@ -1,401 +1,401 @@ study context trait blockId method variant_id chrom pos A1 A2 N af beta se pip logBF cs_95 cs_70 cs_50 cs_95_purity cs_70_purity cs_50_purity within_cs_pip gene event grange_start grange_end source block_id -test_study context1 ENSG00000283047 susie chr22:10414272:A:T chr22 10414272 T A 49 0.5 0.00012460262604543 0.0118460875516983 0.0195354920561804 -0.214033750796832 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10416111:A:T chr22 10416111 T A 49 0.826530612244898 -0.000418811986915532 0.01232628015888 0.020073556407219 -0.188427980719315 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10416669:A:T chr22 10416669 T A 49 0.622448979591837 0.00256440066208943 0.0206321652731468 0.0310191637339924 0.245136099118438 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10420511:A:T chr22 10420511 T A 49 0.928571428571429 0.000441511213912678 0.0123815477614474 0.0201364224047631 -0.18496617644236 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10424460:A:T chr22 10424460 T A 49 0.73469387755102 0.0017060668354073 0.0171619946308905 0.0260967756677665 0.0655951795067474 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10424703:A:T chr22 10424703 T A 49 0.724489795918367 -0.000590042604714606 0.012795782725037 0.0206110382551506 -0.16322863667501 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10425071:A:T chr22 10425071 T A 49 0.795918367346939 -0.000232102913056187 0.0119657793046111 0.0196685863644941 -0.207373763736988 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10425470:A:T chr22 10425470 T A 49 0.938775510204082 -0.000601769415253466 0.0128318176108778 0.0206528049824518 -0.161130125598618 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10426294:A:T chr22 10426294 T A 49 0.663265306122449 -0.000403729171618881 0.0122905816833224 0.0200333084690719 -0.189867021373818 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10427068:A:T chr22 10427068 T A 49 0.775510204081633 -0.000585906099197881 0.0127830397605669 0.0205964497576571 -0.163509677819935 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10438124:A:T chr22 10438124 T A 49 0.73469387755102 0.00022704935156114 0.0119586560203456 0.0196606083994955 -0.207878062621463 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10443846:A:T chr22 10443846 T A 49 0.887755102040816 0.00205156162372537 0.0185857967353367 0.0280608571551424 0.140053388180031 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10444153:A:T chr22 10444153 T A 49 0.795918367346939 0.000502689314201936 0.0125417869840728 0.0203191254024239 -0.176201052404558 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10453438:A:T chr22 10453438 T A 49 0.836734693877551 0.00121785615031104 0.0151328855762234 0.0234432634242213 -0.0393643030058258 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10456378:A:T chr22 10456378 T A 49 0.714285714285714 -0.00154172853792126 0.0164768053564015 0.0251817933401223 0.028760684758964 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10456420:A:T chr22 10456420 T A 49 0.551020408163265 0.0178552180284596 0.0574817648295207 0.108165818393474 1.56853896685971 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10465259:A:T chr22 10465259 T A 49 0.469387755102041 0.000216867428747575 0.0119446437966528 0.0196450430138724 -0.208509699096267 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10465368:A:T chr22 10465368 T A 49 0.948979591836735 0.000848590513373401 0.0136781989509798 0.0216505185976748 -0.115928753748057 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10465522:A:T chr22 10465522 T A 49 0.714285714285714 0.000247744506617105 0.0119888793725001 0.0196943218348984 -0.206199854622317 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10467002:A:T chr22 10467002 T A 49 0.663265306122449 0.00134916201634121 0.0156748124379923 0.0241349961448402 -0.0117631152270683 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10469754:A:T chr22 10469754 T A 49 0.826530612244898 -0.000118185304173131 0.0118411548540153 0.0195300260891038 -0.214298596717278 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10470543:A:T chr22 10470543 T A 49 0.540816326530612 -0.000692959430315095 0.0131267028741863 0.0209964912718783 -0.145345755411166 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10475014:A:T chr22 10475014 T A 49 0.673469387755102 -0.00197516103517967 0.0182738279287418 0.0276230808295465 0.124520900343272 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10475701:A:T chr22 10475701 T A 49 0.673469387755102 0.00114189379513165 0.014823306882974 0.0230536159040262 -0.0558327235927425 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10478619:A:T chr22 10478619 T A 49 0.826530612244898 -0.000228222085657836 0.0119602834093949 0.019662444732321 -0.207720778505961 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10479755:A:T chr22 10479755 T A 49 0.928571428571429 -7.00772976307328e-05 0.0118123531073472 0.0194981543949621 -0.215793236671757 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10481230:A:T chr22 10481230 T A 49 0.816326530612245 0.000223773490077484 0.0119541241438917 0.0196555289540651 -0.208214339413654 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10486457:A:T chr22 10486457 T A 49 0.755102040816326 -9.38957684411143e-05 0.0118247876298636 0.0195119159827093 -0.215127077553341 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10486638:A:T chr22 10486638 T A 49 0.836734693877551 0.000371551907705704 0.0122183723633476 0.0199516637405859 -0.194028502986562 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10491705:A:T chr22 10491705 T A 49 0.959183673469388 0.000720006562775732 0.0132184276114394 0.021104466010024 -0.139889512377475 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10493851:A:T chr22 10493851 T A 49 0.642857142857143 -0.000409455642349873 0.0123038847656036 0.0200484479850787 -0.188898472233391 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10494665:A:T chr22 10494665 T A 49 0.581632653061224 0.000306464693769888 0.0120876019650399 0.0198047658573225 -0.200744938365875 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10497299:A:T chr22 10497299 T A 49 0.693877551020408 -0.00107124043155435 0.0145389900475817 0.022699541404084 -0.070989803559736 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10499223:A:T chr22 10499223 T A 49 0.602040816326531 7.46092077375787e-05 0.0118144448166242 0.0195004671686453 -0.215685890651467 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10499732:A:T chr22 10499732 T A 49 0.775510204081633 -0.0022232797233154 0.0192811829804771 0.029048396423717 0.176219461438218 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10500104:A:T chr22 10500104 T A 49 0.86734693877551 0.000389075581855988 0.0122571289756243 0.0199954088140194 -0.191918325688028 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10500354:A:T chr22 10500354 T A 49 0.795918367346939 0.00262005037653804 0.0208484310236395 0.0313411219473662 0.255830139737117 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10502036:A:T chr22 10502036 T A 49 0.571428571428571 -0.000618989561763408 0.012885343938053 0.0207152116632885 -0.157325705437125 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10506439:A:T chr22 10506439 T A 49 0.704081632653061 -0.00042067910499037 0.0123306886845178 0.0200786188196789 -0.187997708921056 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10507706:A:T chr22 10507706 T A 49 0.775510204081633 -0.000835507327508738 0.0136297520345117 0.0215927013328453 -0.117945510637552 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10509098:A:T chr22 10509098 T A 49 0.673469387755102 -0.000863997947284266 0.0137353731507819 0.0217192703262502 -0.112573149724568 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10519036:A:T chr22 10519036 T A 49 0.714285714285714 -0.000596141851316736 0.0128144228537279 0.0206326902451549 -0.161991748574462 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10519627:A:T chr22 10519627 T A 49 0.887755102040816 0.000553978369475206 0.0126875132066432 0.0204863269134747 -0.168441382444886 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10521008:A:T chr22 10521008 T A 49 0.816326530612245 -0.000727825816269098 0.0132454251852359 0.0211361394728118 -0.138777708757283 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10525486:A:T chr22 10525486 T A 49 0.857142857142857 -0.000744135384450788 0.0133020073735099 0.0212029068816254 -0.135723882236243 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10525507:A:T chr22 10525507 T A 49 0.642857142857143 -0.00264415576517779 0.0209416246145066 0.0314806954003963 0.260159972264421 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10526047:A:T chr22 10526047 T A 49 0.775510204081633 0.000978757636270097 0.0141735184876754 0.022250300447221 -0.0892449271031034 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10528275:A:T chr22 10528275 T A 49 0.877551020408163 0.000280062244495592 0.0120408988550622 0.0197524402274093 -0.203368572494622 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10528863:A:T chr22 10528863 T A 49 0.571428571428571 0.00890300598748926 0.0397105154983334 0.0655240321637635 1.03118457683951 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10529203:A:T chr22 10529203 T A 49 0.744897959183674 -0.000586949798280992 0.0127861974554598 0.0206001265412102 -0.163268772240827 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10529629:A:T chr22 10529629 T A 49 0.714285714285714 -0.00323580554804891 0.0231649265950421 0.0348945872620186 0.368594220802406 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10532120:A:T chr22 10532120 T A 49 0.785714285714286 0.000801051333361983 0.0135042543201973 0.0214426850459805 -0.125150032855212 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10534681:A:T chr22 10534681 T A 49 0.826530612244898 0.00141952864032034 0.0159672877602265 0.0245136593806096 0.00321632609757891 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10536789:A:T chr22 10536789 T A 49 0.673469387755102 -0.00272193076623234 0.0212412476541932 0.0319305703531805 0.274911808574614 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10540221:A:T chr22 10540221 T A 49 0.642857142857143 0.00269605460833793 0.0211420006343716 0.0317807312913893 0.270439236546904 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10542264:A:T chr22 10542264 T A 49 0.622448979591837 -0.00104683490586922 0.0144414647599287 0.022579405560768 -0.0750438182578791 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10544529:A:T chr22 10544529 T A 49 0.673469387755102 -0.00209617492379641 0.0187676133161899 0.028316756173042 0.15007919379155 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10546683:A:T chr22 10546683 T A 49 0.816326530612245 -0.00242150270788673 0.0200711537366117 0.0301930062946671 0.216269770592672 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10552638:A:T chr22 10552638 T A 49 0.806122448979592 -0.00371677573969592 0.024879077740862 0.0376477902605061 0.447361322395856 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10555952:A:T chr22 10555952 T A 49 0.724489795918367 -0.000495204665895579 0.0125214411938105 0.02029576426978 -0.1775743060615 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10556391:A:T chr22 10556391 T A 49 0.826530612244898 -0.000372421641758522 0.0122202050288113 0.0199537918812016 -0.193748430085566 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10557763:A:T chr22 10557763 T A 49 0.785714285714286 -0.000612970421374973 0.0128666075065609 0.0206932434103213 -0.158954929867515 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10559814:A:T chr22 10559814 T A 49 0.704081632653061 0.000312495722734602 0.0120988211796642 0.0198173160354894 -0.200223243437805 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10562607:A:T chr22 10562607 T A 49 0.602040816326531 0.00114349867429543 0.0148296636717442 0.0230618063233545 -0.0549497178012569 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10567672:A:T chr22 10567672 T A 49 0.928571428571429 0.00026333719910739 0.0120132255172557 0.0197215400406378 -0.204769560742193 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10573130:A:T chr22 10573130 T A 49 0.602040816326531 -0.000487456053583111 0.0125003850839538 0.0202718873673351 -0.178200854364427 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10574455:A:T chr22 10574455 T A 49 0.928571428571429 0.00211827808131894 0.0188577232729553 0.0284434879198567 0.155592982494482 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10577070:A:T chr22 10577070 T A 49 0.551020408163265 0.00663375836887394 0.0338779626849859 0.0537130303297024 0.821659401017417 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10579383:A:T chr22 10579383 T A 49 0.5 -0.000770417665218541 0.0133944608825718 0.0213123600172846 -0.130664869408979 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10580355:A:T chr22 10580355 T A 49 0.704081632653061 0.00168064059984929 0.017055619669758 0.0259544896977281 0.0587677629058681 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10580442:A:T chr22 10580442 T A 49 0.622448979591837 -0.00110060868991994 0.0146567294980291 0.0228456538664735 -0.0648784978868797 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10581284:A:T chr22 10581284 T A 49 0.755102040816326 -0.00171046145042209 0.0171799128538299 0.026121664600086 0.0657762862388225 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10588433:A:T chr22 10588433 T A 49 0.602040816326531 0.0037975437044166 0.0251597060805834 0.0381069787348025 0.460833833764856 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10588553:A:T chr22 10588553 T A 49 0.775510204081633 0.00210609512618883 0.0188077261697471 0.0283738826789801 0.151776654159882 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10588781:A:T chr22 10588781 T A 49 0.806122448979592 0.000282988678417756 0.0120458664995138 0.019758029038018 -0.203004933992377 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10592697:A:T chr22 10592697 T A 49 0.86734693877551 0.00398357519144124 0.0257966692494923 0.0391632470770228 0.488397437605731 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10596659:A:T chr22 10596659 T A 49 0.908163265306122 0.000255538473662191 0.0120009784999706 0.0197077407132303 -0.205798410802741 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10598564:A:T chr22 10598564 T A 49 0.76530612244898 -0.000465037393769158 0.0124413348364867 0.0202044384752342 -0.181697943672293 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10603496:A:T chr22 10603496 T A 49 0.897959183673469 -0.00066674222933179 0.0130394191054269 0.0208943902212543 -0.149826685661533 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10606036:A:T chr22 10606036 T A 49 0.489795918367347 -0.000727797060609814 0.0132452361597676 0.0211360365213539 -0.13846651086087 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10608228:A:T chr22 10608228 T A 49 0.571428571428571 -0.00065411769059257 0.0129981742149624 0.0208461386081147 -0.152307519863576 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10610284:A:T chr22 10610284 T A 49 0.806122448979592 -0.00167918892649749 0.0170498315091146 0.0259462061878831 0.0588324589483986 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10610830:A:T chr22 10610830 T A 49 0.693877551020408 -0.00182596011817951 0.0176589099131804 0.0267737015417846 0.091148449677224 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10610843:A:T chr22 10610843 T A 49 0.897959183673469 -0.000687511108367132 0.0131082646935508 0.0209750825043401 -0.145779031023659 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10612814:A:T chr22 10612814 T A 49 0.755102040816326 0.000422689789257703 0.0123353344873424 0.0200841080951339 -0.187096557138601 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10616762:A:T chr22 10616762 T A 49 0.540816326530612 -0.00586346764326386 0.0316967239564957 0.049575650363635 0.737043898475353 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10618998:A:T chr22 10618998 T A 49 0.693877551020408 0.00422145039611182 0.0265962453940794 0.0405064206073906 0.52399316658639 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10623771:A:T chr22 10623771 T A 49 0.63265306122449 0.00185418509350424 0.0177757960141079 0.0269337232964656 0.0978346732490863 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10629671:A:T chr22 10629671 T A 49 0.602040816326531 5.6766202537816e-05 0.0118069658855512 0.019492195822338 -0.216078630914999 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10630095:A:T chr22 10630095 T A 49 0.602040816326531 0.000966050650317046 0.0141241868169411 0.0221899372775474 -0.0921887473790802 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10632977:A:T chr22 10632977 T A 49 0.63265306122449 0.00334174173133708 0.0235496521557552 0.0355028245024768 0.387098350908776 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10633568:A:T chr22 10633568 T A 49 0.704081632653061 0.00158068522562057 0.0166393463877901 0.0253971893983137 0.0368067306054514 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10633778:A:T chr22 10633778 T A 49 0.785714285714286 0.000177977154202845 0.01189690356431 0.0195918796504023 -0.211287379965246 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10634174:A:T chr22 10634174 T A 49 0.755102040816326 -0.00253493648420689 0.0205169240284523 0.0308489492770808 0.238837111675007 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10636554:A:T chr22 10636554 T A 49 0.673469387755102 0.00116561226353973 0.0149194889939324 0.0231743762710905 -0.0503439123128727 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10637126:A:T chr22 10637126 T A 49 0.908163265306122 -0.00234839512232186 0.0197820424903106 0.029769984719865 0.202999559596155 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10637834:A:T chr22 10637834 T A 49 0.928571428571429 -8.14611710728189e-05 0.0118178409982839 0.0195042362015413 -0.215471071276428 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10643179:A:T chr22 10643179 T A 49 0.63265306122449 0.00140329319174616 0.0158994378805558 0.0244259957159919 0.000849354774510064 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10645758:A:T chr22 10645758 T A 49 0.979591836734694 -0.000158535263551754 0.0118763807168801 0.0195690949327988 -0.212382713658822 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10646447:A:T chr22 10646447 T A 49 0.683673469387755 -0.00395688241227179 0.0257062535432098 0.0390115727275423 0.485108388646065 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10651999:A:T chr22 10651999 T A 49 0.693877551020408 -9.22019741390539e-05 0.0118237821629896 0.0195108060382854 -0.215171221468879 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10653467:A:T chr22 10653467 T A 49 0.836734693877551 0.000661195973201314 0.0130212627642514 0.0208731150939733 -0.150984750736833 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10656033:A:T chr22 10656033 T A 49 0.673469387755102 -0.00309745414774994 0.0226566227851283 0.034098415332956 0.344336133637028 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10656463:A:T chr22 10656463 T A 49 0.571428571428571 0.00107024118745279 0.014534941927992 0.0226946125850054 -0.0709999688630701 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10656692:A:T chr22 10656692 T A 49 0.836734693877551 -0.00127260392871528 0.0153579621160188 0.0237291280316401 -0.02760920346365 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10658132:A:T chr22 10658132 T A 49 0.755102040816326 -4.3634317330958e-05 0.0118027576676985 0.0194875395308967 -0.216310140616302 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10659633:A:T chr22 10659633 T A 49 0.704081632653061 0.000670263842621017 0.0130508970361173 0.0209079742654605 -0.148751005500013 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10661938:A:T chr22 10661938 T A 49 0.887755102040816 0.000468290810895685 0.0124498497339007 0.0202140655404763 -0.181445601998412 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10662883:A:T chr22 10662883 T A 49 0.785714285714286 0.000109924057889876 0.0118351475749333 0.0195234039437191 -0.214522685864843 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10664101:A:T chr22 10664101 T A 49 0.908163265306122 0.000123326010153684 0.0118450853833402 0.0195343818979657 -0.214085834147422 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10666159:A:T chr22 10666159 T A 49 0.816326530612245 0.000499162405710089 0.0125322296368727 0.0203080799463297 -0.177042308821796 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10666369:A:T chr22 10666369 T A 49 0.510204081632653 -1.56277103133839e-05 0.0117974503286288 0.0194816724436928 -0.216589913164412 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10667183:A:T chr22 10667183 T A 49 0.918367346938776 0.000601055839154242 0.0128294412716143 0.0206502615652461 -0.160677663508327 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10670967:A:T chr22 10670967 T A 49 0.714285714285714 0.000813295621426034 0.0135484356447305 0.0214956249262619 -0.122059458056127 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10671410:A:T chr22 10671410 T A 49 0.693877551020408 0.000971963407900197 0.0141471764867691 0.0222179646202754 -0.09103989245469 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10674639:A:T chr22 10674639 T A 49 0.63265306122449 -0.00207190733282624 0.0186689443830932 0.0281773962576177 0.144980959666789 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10676894:A:T chr22 10676894 T A 49 0.857142857142857 0.000891336763215435 0.013838090245804 0.0218427768984119 -0.107564336726894 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10677327:A:T chr22 10677327 T A 49 0.551020408163265 0.00101184349216554 0.0143032189751127 0.0224090198740158 -0.0827987904026282 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10682445:A:T chr22 10682445 T A 49 0.642857142857143 0.000843495055355579 0.013659255564232 0.0216279504304798 -0.116582180777185 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10682474:A:T chr22 10682474 T A 49 0.551020408163265 0.000582016742010686 0.012771305273828 0.020582792159993 -0.164410904908221 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10683073:A:T chr22 10683073 T A 49 0.826530612244898 0.00308587503711479 0.0226134968290168 0.0340319883670385 0.341704120249905 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10689363:A:T chr22 10689363 T A 49 0.887755102040816 0.000865582434824786 0.0137412476524894 0.0217263840802983 -0.11212496164543 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10691141:A:T chr22 10691141 T A 49 0.857142857142857 -0.000344805914609869 0.0121620424114262 0.019888279111982 -0.196921642686544 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10692359:A:T chr22 10692359 T A 49 0.612244897959184 0.0022781923507968 0.0195018267057502 0.0293647992094722 0.188358694193761 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10697350:A:T chr22 10697350 T A 49 0.653061224489796 0.000796673318333086 0.0134882900886327 0.0214239108222973 -0.125399624606292 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10698587:A:T chr22 10698587 T A 49 0.714285714285714 0.00109939932837851 0.0146519720519301 0.0228395784649809 -0.0655034275630548 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10703176:A:T chr22 10703176 T A 49 0.591836734693878 -0.000197696297001257 0.0119200407037958 0.0196175840787756 -0.210079400782399 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10705627:A:T chr22 10705627 T A 49 0.846938775510204 0.0002427732934688 0.0119813825238067 0.0196859717330795 -0.206565650726662 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10710822:A:T chr22 10710822 T A 49 0.938775510204082 0.000836455247578999 0.0136334878907187 0.0215968315283632 -0.118629653384369 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10712984:A:T chr22 10712984 T A 49 0.846938775510204 -7.17917066076766e-05 0.0118131558062982 0.0194990222728258 -0.215810933129172 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10714851:A:T chr22 10714851 T A 49 0.724489795918367 0.000590164730210369 0.0127960757552973 0.0206114722323969 -0.162950522618194 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10725148:A:T chr22 10725148 T A 49 0.73469387755102 -0.000499325730095454 0.0125326651550433 0.0203085900814648 -0.176983808237525 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10727419:A:T chr22 10727419 T A 49 0.795918367346939 -0.000654226741263378 0.0129984166192155 0.0208465618927033 -0.151912171169211 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10730495:A:T chr22 10730495 T A 49 0.683673469387755 0.00204177868920177 0.0185461514538819 0.0280045742851213 0.138542133229565 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10732634:A:T chr22 10732634 T A 49 0.73469387755102 0.00278391135338808 0.0214787511635325 0.0322886278973495 0.287281309909518 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10733083:A:T chr22 10733083 T A 49 0.918367346938776 -0.000375056908237312 0.0122259792895677 0.0199602730448895 -0.193528256658368 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10735386:A:T chr22 10735386 T A 49 0.897959183673469 0.00121886877754842 0.0151373922194172 0.0234483893381409 -0.0404427713592525 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10735420:A:T chr22 10735420 T A 49 0.683673469387755 0.00053259105954134 0.0126256133239954 0.0204151085486399 -0.171926481499074 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10737524:A:T chr22 10737524 T A 49 0.714285714285714 0.00182193153784955 0.0176422744806643 0.0267508452199371 0.09033677709939 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10742047:A:T chr22 10742047 T A 49 0.704081632653061 -0.00119626859934744 0.0150445302975702 0.0233316703664057 -0.0439474717688634 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10746455:A:T chr22 10746455 T A 49 0.785714285714286 -0.00315571852922138 0.02287138695644 0.0344340709068404 0.354322730257298 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10757405:A:T chr22 10757405 T A 49 0.693877551020408 0.000780088269801704 0.0134289747841896 0.0213531754363128 -0.129171234593499 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10761055:A:T chr22 10761055 T A 49 0.836734693877551 0.00445075700854772 0.0273509476252707 0.0417943362506098 0.556805711400707 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10761283:A:T chr22 10761283 T A 49 0.63265306122449 -0.000555543227954106 0.0126921513820557 0.0204916157976526 -0.168335513335918 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10762562:A:T chr22 10762562 T A 49 0.857142857142857 0.00123619935505389 0.015208213091264 0.0235385720159753 -0.035687277982029 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10764432:A:T chr22 10764432 T A 49 0.642857142857143 -0.00029549798255458 0.0120677352761005 0.0197825110157297 -0.201808751244653 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10764521:A:T chr22 10764521 T A 49 0.897959183673469 0.000510393949269593 0.0125631541482177 0.0203434447606584 -0.175433806234474 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10773150:A:T chr22 10773150 T A 49 0.724489795918367 -0.000158009842259087 0.0118758672410461 0.0195685164870389 -0.212436431624172 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10775731:A:T chr22 10775731 T A 49 0.642857142857143 0.000409381297204122 0.0123038496540672 0.020048243426728 -0.189379794512913 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10780593:A:T chr22 10780593 T A 49 0.969387755102041 0.000572984015525123 0.0127439342425562 0.020551342006887 -0.16545288631079 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10786551:A:T chr22 10786551 T A 49 0.918367346938776 0.000319148621201933 0.0121114394873131 0.0198314180922898 -0.199696480560637 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10788473:A:T chr22 10788473 T A 49 0.714285714285714 -0.00246815187674059 0.0202550605194145 0.030462701776212 0.225629501885023 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10791509:A:T chr22 10791509 T A 49 0.928571428571429 -0.00233013496158636 0.0197089557396607 0.0296648559310061 0.198397821604452 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10793469:A:T chr22 10793469 T A 49 0.918367346938776 -0.00415426811343854 0.0263726512671875 0.0401271955415131 0.51502791363022 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10798741:A:T chr22 10798741 T A 49 0.724489795918367 -0.000875248583543419 0.0137775601567425 0.0217698443535626 -0.110750621708416 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10799206:A:T chr22 10799206 T A 49 0.744897959183674 -0.000122487711185555 0.0118444278276737 0.019533657776071 -0.214107490607593 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10802154:A:T chr22 10802154 T A 49 0.714285714285714 0.000616949817787239 0.0128790497082697 0.0207077380622244 -0.158127305762296 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10812259:A:T chr22 10812259 T A 49 0.755102040816326 -0.000763915327108601 0.0133714629223118 0.0212850686015515 -0.131992290383792 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10824509:A:T chr22 10824509 T A 49 0.918367346938776 0.000481839444053365 0.0124855305147625 0.0202547419299574 -0.179543847784241 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10824856:A:T chr22 10824856 T A 49 0.704081632653061 0.00605566722586523 0.032252276811917 0.0506144888969432 0.759122995437523 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10828045:A:T chr22 10828045 T A 49 0.877551020408163 -0.00220927336034098 0.0192252554684286 0.0289673435789919 0.174256046727303 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10832058:A:T chr22 10832058 T A 49 0.530612244897959 0.000788232030022024 0.0134582020608291 0.0213877755380645 -0.12792311863154 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10832995:A:T chr22 10832995 T A 49 0.510204081632653 0.000351467025238389 0.012175672651056 0.0199036782652328 -0.19599588316903 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10833119:A:T chr22 10833119 T A 49 0.612244897959184 -0.00122097571934847 0.0151455168717577 0.0234595070981362 -0.0381052242828241 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10836135:A:T chr22 10836135 T A 49 0.897959183673469 -0.00112725178384684 0.0147638870071913 0.0229795988668535 -0.0583331173190373 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10836569:A:T chr22 10836569 T A 49 0.76530612244898 0.00010489732229466 0.0118317334674765 0.0195196089735842 -0.214747699810699 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10838751:A:T chr22 10838751 T A 49 0.938775510204082 -0.00091454590800013 0.0139261532105208 0.0219491559695304 -0.103015182484638 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10840270:A:T chr22 10840270 T A 49 0.693877551020408 -0.000921028907319954 0.013950741760174 0.021979144631571 -0.101188921726117 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10844706:A:T chr22 10844706 T A 49 0.948979591836735 -0.000423384465590466 0.0123371312844666 0.0200859936156614 -0.187440985199315 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10845699:A:T chr22 10845699 T A 49 0.642857142857143 0.00151879992967932 0.0163810703121708 0.0250555572245555 0.0242559052942604 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10847565:A:T chr22 10847565 T A 49 0.744897959183674 -0.0021031944365383 0.0187963551149696 0.0283569149500341 0.152070475784197 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10855119:A:T chr22 10855119 T A 49 0.918367346938776 0.000422837827787524 0.0123358061216927 0.0200845002721118 -0.187487670455817 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10861184:A:T chr22 10861184 T A 49 0.877551020408163 -0.00229931929648275 0.0195860852112862 0.0294868960797596 0.192225171471523 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10864195:A:T chr22 10864195 T A 49 0.683673469387755 0.000206912187383754 0.0119315821357436 0.0196304780901325 -0.20929287122276 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10864324:A:T chr22 10864324 T A 49 0.714285714285714 0.0011062026224197 0.0146791451473855 0.0228736851805423 -0.0633825756661135 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10864947:A:T chr22 10864947 T A 49 0.571428571428571 0.000187289738386531 0.0119074991220401 0.0196036913488391 -0.21060279602322 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10865177:A:T chr22 10865177 T A 49 0.693877551020408 0.000175927942169035 0.011894625188308 0.0195893567323883 -0.21138632681521 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10866468:A:T chr22 10866468 T A 49 0.724489795918367 -0.00160172158006486 0.0167268678260145 0.0255140518673524 0.0420026155188913 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10869245:A:T chr22 10869245 T A 49 0.775510204081633 -0.000261644831297101 0.012010568560021 0.0197185099082037 -0.205099695297063 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10873502:A:T chr22 10873502 T A 49 0.785714285714286 -0.00211042421430557 0.0188254161188187 0.0283986716321912 0.15295599590507 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10875136:A:T chr22 10875136 T A 49 0.612244897959184 0.00579859451529256 0.0315074588738014 0.0492239541893592 0.7295015292967 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10876397:A:T chr22 10876397 T A 49 0.591836734693878 0.000998684097890953 0.014251364935068 0.0223456471742464 -0.0849437190418026 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10879323:A:T chr22 10879323 T A 49 0.938775510204082 -0.000521819631462864 0.012594992483457 0.0203800473968279 -0.173372944747713 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10879425:A:T chr22 10879425 T A 49 0.744897959183674 -0.00224515551887414 0.0193691584186369 0.0291744418982446 0.180957847152961 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10880173:A:T chr22 10880173 T A 49 0.948979591836735 -0.000955191610138938 0.0140821822767671 0.0221386448831214 -0.094654624008032 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10885622:A:T chr22 10885622 T A 49 0.948979591836735 -0.000505829748199859 0.0125504086997731 0.020329007714979 -0.17568574576616 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10885916:A:T chr22 10885916 T A 49 0.938775510204082 -0.000329016517490519 0.012130456584834 0.0198528235011618 -0.198500762370248 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10888434:A:T chr22 10888434 T A 49 0.622448979591837 -0.000216633500433892 0.0119443862716267 0.0196446935650014 -0.208712031914356 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10889177:A:T chr22 10889177 T A 49 0.63265306122449 -0.00409011662904822 0.0261574822012401 0.0397650380366368 0.505606286592136 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10889662:A:T chr22 10889662 T A 49 0.897959183673469 0.000931127760161278 0.0139896167533062 0.0220259664162838 -0.0999287493252224 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10889761:A:T chr22 10889761 T A 49 0.816326530612245 -0.000607237286282037 0.0128486096159609 0.0206724948310281 -0.159584354087692 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10890651:A:T chr22 10890651 T A 49 0.520408163265306 -0.000253677709800822 0.0119979775452894 0.0197044960657717 -0.205645686512019 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10894169:A:T chr22 10894169 T A 49 0.622448979591837 -0.00197103828605881 0.0182566487614744 0.0275997043307297 0.123010234359275 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10896743:A:T chr22 10896743 T A 49 0.918367346938776 -0.00197994857299029 0.018293585704492 0.0276503625324936 0.125852251674984 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10897257:A:T chr22 10897257 T A 49 0.73469387755102 0.000573492916287932 0.012745527528418 0.020553099998091 -0.165593076004368 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10901738:A:T chr22 10901738 T A 49 0.959183673469388 0.00024653424658582 0.0119870233969445 0.0196922752458754 -0.206227677766496 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10907041:A:T chr22 10907041 T A 49 0.724489795918367 0.00116838534153627 0.0149307693987507 0.0231885488677301 -0.0497408177128985 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10909660:A:T chr22 10909660 T A 49 0.76530612244898 -0.00114592579815905 0.0148396002471701 0.0230740912371675 -0.0547888526998656 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10909667:A:T chr22 10909667 T A 49 0.63265306122449 0.00325284297624305 0.0232268390029316 0.0349927358559617 0.371112360206921 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context1 ENSG00000283047 susie chr22:10913450:A:T chr22 10913450 T A 49 0.591836734693878 -0.000356884532182013 0.0121869490532273 0.0199163936394767 -0.195323510052564 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10414272:A:T chr22 10414272 T A 49 0.5 0.000997013490760742 0.0142563221172856 0.0222132309998586 -0.0930392088535594 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10416111:A:T chr22 10416111 T A 49 0.826530612244898 -0.00120869685571505 0.0151095729889154 0.0232697476617787 -0.0465182860716684 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10416669:A:T chr22 10416669 T A 49 0.622448979591837 0.00250291864044778 0.0204183761462999 0.0305215703602975 0.228786453446787 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10420511:A:T chr22 10420511 T A 49 0.928571428571429 0.000953136473249098 0.0140849132916287 0.0220049425386445 -0.102424208402342 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10424460:A:T chr22 10424460 T A 49 0.73469387755102 0.00307198767831087 0.0225925154379074 0.0338017257780278 0.333465650042567 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10424703:A:T chr22 10424703 T A 49 0.724489795918367 -0.000937556907316674 0.0140246538349569 0.021932026083324 -0.105817795631375 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10425071:A:T chr22 10425071 T A 49 0.795918367346939 -3.88074249758217e-05 0.0118021879042273 0.0193642697817763 -0.230186908870998 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10425470:A:T chr22 10425470 T A 49 0.938775510204082 0.000517548351796445 0.0125876964144415 0.0202441223802096 -0.185679245182509 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10426294:A:T chr22 10426294 T A 49 0.663265306122449 -0.000291138231016759 0.012062146791137 0.0196519645212651 -0.215427234193323 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10427068:A:T chr22 10427068 T A 49 0.775510204081633 0.000209811446343499 0.0119367723387426 0.0195127768094481 -0.222543591339107 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10438124:A:T chr22 10438124 T A 49 0.73469387755102 0.00157755206215603 0.0166446549984194 0.0252499649609901 0.0354364741888399 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10443846:A:T chr22 10443846 T A 49 0.887755102040816 0.000535992322555446 0.0126402465134129 0.0203040865133962 -0.182787777262217 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10444153:A:T chr22 10444153 T A 49 0.795918367346939 0.00107780296337908 0.0145775170802124 0.0226071492946136 -0.0752936205866643 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10453438:A:T chr22 10453438 T A 49 0.836734693877551 0.000475866423701292 0.0124738016261839 0.0201146059099291 -0.192176055234582 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10456378:A:T chr22 10456378 T A 49 0.714285714285714 -0.003158003029013 0.0229106053329798 0.0342959369157481 0.34808711981606 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10456420:A:T chr22 10456420 T A 49 0.551020408163265 0.0118257933930693 0.0463079789280917 0.0797866232596487 1.21920013161837 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10465259:A:T chr22 10465259 T A 49 0.469387755102041 -0.000579886659667936 0.0127702506467665 0.0204530326851395 -0.175516003041958 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10465368:A:T chr22 10465368 T A 49 0.948979591836735 0.000646224251849761 0.0129788630494056 0.020693782897338 -0.163791585890142 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10465522:A:T chr22 10465522 T A 49 0.714285714285714 -0.000485542102060457 0.0124996233693576 0.020143911837793 -0.190709621689209 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10467002:A:T chr22 10467002 T A 49 0.663265306122449 0.00159097260337778 0.0167007574548546 0.0253242379696469 0.0384130526428643 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10469754:A:T chr22 10469754 T A 49 0.826530612244898 -0.000291664774108436 0.0120630800165089 0.0196530017444382 -0.215392170445612 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10470543:A:T chr22 10470543 T A 49 0.540816326530612 -0.00135170356777024 0.0157012541980003 0.0240211446576972 -0.0147016822045206 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10475014:A:T chr22 10475014 T A 49 0.673469387755102 -0.0029238706658652 0.0220383168771763 0.032949418935353 0.307127269695668 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10475701:A:T chr22 10475701 T A 49 0.673469387755102 0.000120274741797617 0.0118436361584544 0.0194099048440415 -0.227838298456401 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10478619:A:T chr22 10478619 T A 49 0.826530612244898 0.000257601966404472 0.0120059361529617 0.0195894593614865 -0.218629712890756 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10479755:A:T chr22 10479755 T A 49 0.928571428571429 -0.00152521024439461 0.0164257292887405 0.0249615011989139 0.0238225602365031 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10481230:A:T chr22 10481230 T A 49 0.816326530612245 -0.000205729047725032 0.0119314784049873 0.0195069162501851 -0.222856069541862 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10486457:A:T chr22 10486457 T A 49 0.755102040816326 -0.000701590709846259 0.0131629318885973 0.0209079547468223 -0.153558139202176 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10486638:A:T chr22 10486638 T A 49 0.836734693877551 0.000403753050510653 0.0122939189168379 0.0199113807052124 -0.20239297699021 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10491705:A:T chr22 10491705 T A 49 0.959183673469388 0.000526589597328323 0.0126132997192093 0.0202733177120042 -0.184298970505331 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10493851:A:T chr22 10493851 T A 49 0.642857142857143 0.000248820134457332 0.0119922508045929 0.0195742643279995 -0.219426919588466 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10494665:A:T chr22 10494665 T A 49 0.581632653061224 -0.000295301397727222 0.0120695550195084 0.0196602124471549 -0.21502438738142 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10497299:A:T chr22 10497299 T A 49 0.693877551020408 -0.00133566616090745 0.0156345537806247 0.0239356765566737 -0.0183349356622859 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10499223:A:T chr22 10499223 T A 49 0.602040816326531 5.5349995971946e-05 0.0118071891981858 0.0193697717516598 -0.229901172286163 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10499732:A:T chr22 10499732 T A 49 0.775510204081633 -0.00099648889632226 0.0142542491677856 0.0222107182389899 -0.0930401033399563 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10500104:A:T chr22 10500104 T A 49 0.86734693877551 -0.000324529194617558 0.0121241464435273 0.0197210960572423 -0.211886321426337 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10500354:A:T chr22 10500354 T A 49 0.795918367346939 0.00272756938768071 0.0212912044398418 0.0318178375852366 0.27130343885081 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10502036:A:T chr22 10502036 T A 49 0.571428571428571 -0.00101901251628602 0.0143430922358531 0.0223192209157416 -0.0879752329367557 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10506439:A:T chr22 10506439 T A 49 0.704081632653061 0.000650582346751484 0.0129930371458561 0.0207102210947178 -0.162964881433982 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10507706:A:T chr22 10507706 T A 49 0.775510204081633 -0.00176110707246961 0.0174106233578862 0.0262747314923751 0.0757761016478019 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10509098:A:T chr22 10509098 T A 49 0.673469387755102 -0.000218412211922369 0.0119482480691241 0.0195254824892642 -0.221898664736423 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10519036:A:T chr22 10519036 T A 49 0.714285714285714 -0.000108903840568512 0.0118353326344508 0.0194007548725494 -0.228313896572872 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10519627:A:T chr22 10519627 T A 49 0.887755102040816 0.000638320380893653 0.0129532905549713 0.0206641611089537 -0.165187485645434 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10521008:A:T chr22 10521008 T A 49 0.816326530612245 -0.000761419625124584 0.0133706936459433 0.0211516646804152 -0.141912310285953 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10525486:A:T chr22 10525486 T A 49 0.857142857142857 -0.000499329332849578 0.0125370707724276 0.0201864699924171 -0.188595038199411 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10525507:A:T chr22 10525507 T A 49 0.642857142857143 -0.00252106267852975 0.020489573196876 0.0306262618952563 0.232263329270693 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10526047:A:T chr22 10526047 T A 49 0.775510204081633 -0.00028932326391748 0.0120589532893946 0.0196484026280365 -0.215671086422883 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10528275:A:T chr22 10528275 T A 49 0.877551020408163 -0.000370835864073382 0.0122196467542981 0.0198279544617923 -0.206546572368672 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10528863:A:T chr22 10528863 T A 49 0.571428571428571 0.00210616451868206 0.0188315742956691 0.02823765888442 0.149448326563375 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10529203:A:T chr22 10529203 T A 49 0.744897959183674 0.000469225201987433 0.0124562999139034 0.0200947621557871 -0.193165211801155 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10529629:A:T chr22 10529629 T A 49 0.714285714285714 -0.0026264803808903 0.0209008002790886 0.0312345791880136 0.25239023681003 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10532120:A:T chr22 10532120 T A 49 0.785714285714286 0.000115067500793858 0.011839733008526 0.0194056035594149 -0.228059917073786 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10534681:A:T chr22 10534681 T A 49 0.826530612244898 0.000914110099974422 0.0139345805733159 0.0218233767444995 -0.110642979487647 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10536789:A:T chr22 10536789 T A 49 0.673469387755102 -0.00316502872405244 0.0229364477966651 0.034336296396861 0.349056667596897 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10540221:A:T chr22 10540221 T A 49 0.642857142857143 0.00108167394834093 0.0145930665767003 0.022626335251014 -0.0744516947556418 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10542264:A:T chr22 10542264 T A 49 0.622448979591837 -0.00212851377940946 0.018922412781464 0.0283658289281554 0.154043238698646 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10544529:A:T chr22 10544529 T A 49 0.673469387755102 -0.000419445905132102 0.0123311018135228 0.0199532600511451 -0.200232888905311 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10546683:A:T chr22 10546683 T A 49 0.816326530612245 -0.00239658651150269 0.0199986472047015 0.0299082564663098 0.207936699755707 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10552638:A:T chr22 10552638 T A 49 0.806122448979592 -0.00227937613115985 0.0195311960866304 0.0292329325268286 0.184674261703083 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10555952:A:T chr22 10555952 T A 49 0.724489795918367 -1.21203061673185e-05 0.0117978195443258 0.0193594651800134 -0.230436388546619 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10556391:A:T chr22 10556391 T A 49 0.826530612244898 -0.000613835415755427 0.012875281345243 0.0205739773740432 -0.169616147841961 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10557763:A:T chr22 10557763 T A 49 0.785714285714286 -0.000811043813347139 0.0135491407767585 0.0213626252754696 -0.131948966452503 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10559814:A:T chr22 10559814 T A 49 0.704081632653061 0.000940002091642855 0.0140340857032301 0.0219434333956205 -0.105243795730436 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10562607:A:T chr22 10562607 T A 49 0.602040816326531 0.00175333040931214 0.0173782698472455 0.0262309635126886 0.0741008015958587 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10567672:A:T chr22 10567672 T A 49 0.928571428571429 0.00144523004941393 0.0160913208118767 0.0245247251564663 0.00626921605246081 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10573130:A:T chr22 10573130 T A 49 0.602040816326531 2.90655976877889e-05 0.0118000639841375 0.0193619331909514 -0.23031250398848 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10574455:A:T chr22 10574455 T A 49 0.928571428571429 0.00224466354326496 0.0193918567292825 0.029033131277926 0.178178160800198 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10577070:A:T chr22 10577070 T A 49 0.551020408163265 0.0101130081538085 0.0425850035118028 0.0713801744694333 1.10358178591797 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10579383:A:T chr22 10579383 T A 49 0.5 -0.000242466702796362 0.0119826148427251 0.0195635785193237 -0.219917331042667 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10580355:A:T chr22 10580355 T A 49 0.704081632653061 0.00168484107781932 0.0170928728419336 0.0258467434339743 0.0590330914222098 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10580442:A:T chr22 10580442 T A 49 0.622448979591837 -0.000841889255767748 0.0136625533725283 0.0214974684656415 -0.125743155859816 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10581284:A:T chr22 10581284 T A 49 0.755102040816326 -0.0057163950428175 0.0313084805812118 0.0485909672074237 0.705341010482056 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10588433:A:T chr22 10588433 T A 49 0.602040816326531 0.00557086999439247 0.0308775204261386 0.0478004023827058 0.688700824258445 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10588553:A:T chr22 10588553 T A 49 0.775510204081633 0.00126216299218155 0.015329826969493 0.0235477164107052 -0.0344275473595727 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10588781:A:T chr22 10588781 T A 49 0.806122448979592 0.000931716912575062 0.0140021376784287 0.0219048423981457 -0.106935154094349 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10592697:A:T chr22 10592697 T A 49 0.86734693877551 0.00456115965490453 0.0277469862463659 0.0422404627268572 0.561352637190143 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10596659:A:T chr22 10596659 T A 49 0.908163265306122 0.000221404470139422 0.0119523470396137 0.019530017487607 -0.221716029953381 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10598564:A:T chr22 10598564 T A 49 0.76530612244898 -0.000173755799261447 0.0118934263445836 0.0194648435419349 -0.225009460170223 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10603496:A:T chr22 10603496 T A 49 0.897959183673469 -0.000982913244295245 0.0142009782942365 0.0221458368470363 -0.0960364650118984 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10606036:A:T chr22 10606036 T A 49 0.489795918367347 -0.000874766629692891 0.0137853175460691 0.0216441308250184 -0.118855481602797 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10608228:A:T chr22 10608228 T A 49 0.571428571428571 0.000148067252489095 0.0118673157731241 0.0194360193441355 -0.226469458246583 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10610284:A:T chr22 10610284 T A 49 0.806122448979592 -0.0025819552428631 0.0207276179557351 0.030977642813638 0.243904966957952 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10610830:A:T chr22 10610830 T A 49 0.693877551020408 -0.00363362679744982 0.0246219356985767 0.0370154807427632 0.426012942492115 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10610843:A:T chr22 10610843 T A 49 0.897959183673469 -0.000297926021498631 0.0120742723193372 0.0196654671027577 -0.214756451674736 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10612814:A:T chr22 10612814 T A 49 0.755102040816326 0.000553411944677052 0.0126910146461582 0.0203621646070477 -0.179836411964769 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10616762:A:T chr22 10616762 T A 49 0.540816326530612 -0.00242682770147725 0.0201184622529987 0.030082623866831 0.214101934129509 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10618998:A:T chr22 10618998 T A 49 0.693877551020408 0.00745077112944287 0.036118479812657 0.0578187164721793 0.884297883213829 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10623771:A:T chr22 10623771 T A 49 0.63265306122449 0.00212066262091415 0.0188905168490721 0.0283207961904658 0.152389448056101 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10629671:A:T chr22 10629671 T A 49 0.602040816326531 -0.000874982669356645 0.0137861290906883 0.0216451044696642 -0.118795100073508 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10630095:A:T chr22 10630095 T A 49 0.602040816326531 0.000941947724630516 0.014041594154539 0.0219525208122646 -0.104758808682123 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10632977:A:T chr22 10632977 T A 49 0.63265306122449 0.00134874647165655 0.0156889595516892 0.0240053612668061 -0.0154759053357712 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10633568:A:T chr22 10633568 T A 49 0.704081632653061 0.00300840865700826 0.0223556039869913 0.0334360864767465 0.322032418928185 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10633778:A:T chr22 10633778 T A 49 0.785714285714286 0.000303396679204071 0.0120842243585462 0.0196765554363009 -0.214201612002345 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10634174:A:T chr22 10634174 T A 49 0.755102040816326 -0.00144776563634748 0.0161019154184447 0.024538490764438 0.00682519611808091 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10636554:A:T chr22 10636554 T A 49 0.673469387755102 0.00343005645417316 0.0238991291354737 0.0358544872403955 0.393071714850919 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10637126:A:T chr22 10637126 T A 49 0.908163265306122 -0.001794413249718 0.0175490952878492 0.0264624570510671 0.0833777441467608 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10637834:A:T chr22 10637834 T A 49 0.928571428571429 0.000207149391610632 0.0119333099767536 0.0195089428285734 -0.222756318432639 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10643179:A:T chr22 10643179 T A 49 0.63265306122449 0.000953054598048691 0.0140845766570035 0.0220045626605707 -0.102218686690991 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10645758:A:T chr22 10645758 T A 49 0.979591836734694 0.00152346178096281 0.0164184033840898 0.0249519052769753 0.023588153461067 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10646447:A:T chr22 10646447 T A 49 0.683673469387755 -0.00177546712801226 0.017470340675727 0.0263556189010039 0.0789185154155984 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10651999:A:T chr22 10651999 T A 49 0.693877551020408 9.37191542091472e-05 0.0118255074895841 0.019389934814125 -0.228856835272909 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10653467:A:T chr22 10653467 T A 49 0.836734693877551 0.000858132350958835 0.0137229866522647 0.0215695570880229 -0.122524316402678 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10656033:A:T chr22 10656033 T A 49 0.673469387755102 -0.00787468700440584 0.0372141648221483 0.0600235016622045 0.923520592720477 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10656463:A:T chr22 10656463 T A 49 0.571428571428571 8.9331129190263e-06 0.0117976040487534 0.0193592281524402 -0.23044902887677 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10656692:A:T chr22 10656692 T A 49 0.836734693877551 0.000103917283594669 0.01183194596489 0.0193970247728052 -0.228500205745687 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10658132:A:T chr22 10658132 T A 49 0.755102040816326 4.97736652461577e-05 0.0118053077977423 0.0193677016336202 -0.230010812834214 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10659633:A:T chr22 10659633 T A 49 0.704081632653061 0.000672657599972081 0.0130656855909276 0.0207946049517018 -0.158923754520997 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10661938:A:T chr22 10661938 T A 49 0.887755102040816 0.000867651241702693 0.0137585975887341 0.0216121404955965 -0.12042763699758 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10662883:A:T chr22 10662883 T A 49 0.785714285714286 0.000370895314300426 0.0122197732051984 0.0198280996811681 -0.206506753020066 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10664101:A:T chr22 10664101 T A 49 0.908163265306122 -0.000823634080999424 0.0135952127312716 0.0214173333150066 -0.129401629189535 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10666159:A:T chr22 10666159 T A 49 0.816326530612245 -0.000343205027621966 0.012161365880139 0.0197626831292598 -0.209840189648222 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10666369:A:T chr22 10666369 T A 49 0.510204081632653 0.000768990846725656 0.0133975757944197 0.0211833548524851 -0.14035391692476 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10667183:A:T chr22 10667183 T A 49 0.918367346938776 -0.000597016932806703 0.0128227784002107 0.020513452998345 -0.17255341595639 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10670967:A:T chr22 10670967 T A 49 0.714285714285714 0.00210070275962203 0.0188093181996526 0.0282063737208097 0.147940789566932 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10671410:A:T chr22 10671410 T A 49 0.693877551020408 0.000726324116939938 0.013247772191481 0.0210072269879522 -0.148783659870764 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10674639:A:T chr22 10674639 T A 49 0.63265306122449 -0.00206840582212502 0.0186777298633937 0.0280213328817726 0.141546809310242 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10676894:A:T chr22 10676894 T A 49 0.857142857142857 -0.000324886108485984 0.0121248448129258 0.0197218710246955 -0.211893390269044 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10677327:A:T chr22 10677327 T A 49 0.551020408163265 0.00158106663260621 0.0166593508421658 0.0252694026001131 0.0362052061350185 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10682445:A:T chr22 10682445 T A 49 0.642857142857143 0.00163095100070316 0.0168678667814605 0.0255461371038576 0.0471912586124774 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10682474:A:T chr22 10682474 T A 49 0.551020408163265 -2.98484392203838e-05 0.0118002115692238 0.019362096614726 -0.230293175619074 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10683073:A:T chr22 10683073 T A 49 0.826530612244898 0.000955284817707001 0.0140932446016259 0.0220150421413005 -0.101913162053275 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10689363:A:T chr22 10689363 T A 49 0.887755102040816 0.000491299130793423 0.0125151690678031 0.0201615690212552 -0.189847275840261 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10691141:A:T chr22 10691141 T A 49 0.857142857142857 0.00170493083292533 0.0171766702985029 0.025959201681768 0.0635550288519388 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10692359:A:T chr22 10692359 T A 49 0.612244897959184 0.00221435584111269 0.0192697856856049 0.0288588466265368 0.171694445058335 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10697350:A:T chr22 10697350 T A 49 0.653061224489796 0.00061295261800192 0.01287249984851 0.0205707716088578 -0.169735315891337 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10698587:A:T chr22 10698587 T A 49 0.714285714285714 0.00168461138266992 0.0170919472289873 0.0258454408114108 0.0593668572144564 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10703176:A:T chr22 10703176 T A 49 0.591836734693878 -0.00162653453036814 0.0168494284282097 0.0255215669758887 0.0463961493074787 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10705627:A:T chr22 10705627 T A 49 0.846938775510204 -0.00100511294382497 0.0142882103152808 0.022252135443542 -0.09123453698052 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10710822:A:T chr22 10710822 T A 49 0.938775510204082 -0.000285447633414108 0.0120521699725102 0.0196408645989883 -0.215937792467823 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10712984:A:T chr22 10712984 T A 49 0.846938775510204 -8.82344592231569e-05 0.0118223184684913 0.0193864216324927 -0.229055708217699 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10714851:A:T chr22 10714851 T A 49 0.724489795918367 -0.000580304711525087 0.0127715117999358 0.0204544933065695 -0.175340512996224 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10725148:A:T chr22 10725148 T A 49 0.73469387755102 0.000158564840508736 0.0118775005627117 0.0194472574726996 -0.225909233275926 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10727419:A:T chr22 10727419 T A 49 0.795918367346939 -0.00109430115247068 0.0146438813434682 0.0226891057350707 -0.0717294966601461 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10730495:A:T chr22 10730495 T A 49 0.683673469387755 0.00115168079883328 0.0148763557114351 0.0229777776513406 -0.0590328203013502 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10732634:A:T chr22 10732634 T A 49 0.73469387755102 0.0008180783633746 0.0135748526399509 0.0213931337799201 -0.130616268205172 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10733083:A:T chr22 10733083 T A 49 0.918367346938776 0.000284271243396389 0.0120501364657317 0.0196385937286007 -0.216129899972811 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10735386:A:T chr22 10735386 T A 49 0.897959183673469 0.00268403515314946 0.0211235744436546 0.0315666578905831 0.26348589145735 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10735420:A:T chr22 10735420 T A 49 0.683673469387755 3.67653568135809e-05 0.011801692073978 0.0193637244000949 -0.230215060824124 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10737524:A:T chr22 10737524 T A 49 0.714285714285714 0.00202283660487407 0.0184914710780463 0.0277606442836863 0.131992894409538 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10742047:A:T chr22 10742047 T A 49 0.704081632653061 0.000142197645911849 0.0118619190513866 0.0194300627410058 -0.226804917762595 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10746455:A:T chr22 10746455 T A 49 0.785714285714286 -0.00173728876036601 0.0173115086955619 0.0261407591636431 0.0707788632427395 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10757405:A:T chr22 10757405 T A 49 0.693877551020408 0.000818234871913488 0.0135754264447089 0.0213938141202347 -0.130593487146343 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10761055:A:T chr22 10761055 T A 49 0.836734693877551 0.00374788358707337 0.025021487266074 0.0376649836713511 0.444003696353208 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10761283:A:T chr22 10761283 T A 49 0.63265306122449 -0.00141226268048948 0.0159536638622093 0.0243462600997078 -0.00120293870047938 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10762562:A:T chr22 10762562 T A 49 0.857142857142857 0.000401303739505408 0.0122882106230987 0.019904965255228 -0.202653336151527 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10764432:A:T chr22 10764432 T A 49 0.642857142857143 -0.000502717543622461 0.012546388163973 0.0201970707463245 -0.188061002931229 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10764521:A:T chr22 10764521 T A 49 0.897959183673469 0.00231549462456456 0.0196757874552399 0.0294409044947369 0.1921001825762 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10773150:A:T chr22 10773150 T A 49 0.724489795918367 -0.000855619277090277 0.0137136054938216 0.0215583563133116 -0.123017442482751 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10775731:A:T chr22 10775731 T A 49 0.642857142857143 0.000973297746454978 0.0141633767616987 0.0221001240746014 -0.0981041883833743 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10780593:A:T chr22 10780593 T A 49 0.969387755102041 0.000404297369885455 0.0122951826976401 0.0199128106329565 -0.202248017036715 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10786551:A:T chr22 10786551 T A 49 0.918367346938776 -0.000311657151646728 0.0120995499047171 0.0196936442404505 -0.21331371041022 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10788473:A:T chr22 10788473 T A 49 0.714285714285714 -0.00245124308237971 0.0202148985697406 0.030223473895979 0.218468946538196 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10791509:A:T chr22 10791509 T A 49 0.928571428571429 -0.00368544614614985 0.0248036745987028 0.037310257651143 0.434119720060361 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10793469:A:T chr22 10793469 T A 49 0.918367346938776 -0.0030897220211719 0.0226583012648488 0.0339036898957201 0.336295673458877 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10798741:A:T chr22 10798741 T A 49 0.724489795918367 -7.60944866525797e-05 0.0118159331472122 0.0193793924836597 -0.22941839508825 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10799206:A:T chr22 10799206 T A 49 0.744897959183674 -0.00026889708829195 0.012024174955807 0.019609723177379 -0.217586479679743 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10802154:A:T chr22 10802154 T A 49 0.714285714285714 0.000521101016417588 0.0125977216654132 0.0202555481987873 -0.18515774440642 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10812259:A:T chr22 10812259 T A 49 0.755102040816326 -0.00218775884792526 0.0191624168983264 0.0287059828106061 0.166175662515624 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10824509:A:T chr22 10824509 T A 49 0.918367346938776 0.000552577697102337 0.0126885756725037 0.0203593502642769 -0.180171069218817 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10824856:A:T chr22 10824856 T A 49 0.704081632653061 0.00505832886048678 0.0293204309051408 0.044994677767457 0.626605100072824 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10828045:A:T chr22 10828045 T A 49 0.877551020408163 1.85735049659649e-05 0.0117984567293422 0.019360166414669 -0.230395146383054 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10832058:A:T chr22 10832058 T A 49 0.530612244897959 0.00316864422036729 0.0229497874941985 0.0343570140817511 0.350076875484192 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10832995:A:T chr22 10832995 T A 49 0.510204081632653 0.000163507611074861 0.0118825284306988 0.0194528082798275 -0.225623078025694 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10833119:A:T chr22 10833119 T A 49 0.612244897959184 -0.00082539326943636 0.0136016689277709 0.0214250154002512 -0.128979653040923 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10836135:A:T chr22 10836135 T A 49 0.897959183673469 -0.000105795423361236 0.0118332017961221 0.019398409545788 -0.22841475961678 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10836569:A:T chr22 10836569 T A 49 0.76530612244898 -7.73537708651719e-05 0.0118165500751596 0.0193800733622388 -0.229365287527847 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10838751:A:T chr22 10838751 T A 49 0.938775510204082 -0.00050878175039465 0.0125631863149509 0.0202161819761566 -0.187204153294977 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10840270:A:T chr22 10840270 T A 49 0.693877551020408 -0.00199267877262704 0.0183678688997719 0.0275883727362123 0.125752132867894 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10844706:A:T chr22 10844706 T A 49 0.948979591836735 -0.000903506741415491 0.0138941224726138 0.0217746808589072 -0.112939578460113 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10845699:A:T chr22 10845699 T A 49 0.642857142857143 0.0010120698119648 0.0143156555309655 0.0222856616689123 -0.0896412683400457 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10847565:A:T chr22 10847565 T A 49 0.744897959183674 -0.0020763321316545 0.018710077673226 0.02806671050749 0.143384742941055 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10855119:A:T chr22 10855119 T A 49 0.918367346938776 -1.1229055656964e-06 0.0117973511094364 0.0193589501397413 -0.230462006505961 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10861184:A:T chr22 10861184 T A 49 0.877551020408163 -0.00159957414244795 0.0167367364255303 0.025371888547301 0.0403458706936517 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10864195:A:T chr22 10864195 T A 49 0.683673469387755 -0.000202732978688775 0.0119276539507399 0.0195026851234197 -0.223064281618755 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10864324:A:T chr22 10864324 T A 49 0.714285714285714 0.000240974501437737 0.011980390291183 0.0195611061309888 -0.220090008504772 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10864947:A:T chr22 10864947 T A 49 0.571428571428571 -0.000676737901759384 0.0130792551381888 0.0208104050609855 -0.158078944441939 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10865177:A:T chr22 10865177 T A 49 0.693877551020408 0.000705135509164006 0.0131749995723196 0.0209220502822121 -0.15291197505093 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10866468:A:T chr22 10866468 T A 49 0.724489795918367 -0.0010132784556407 0.0143204266155972 0.022291497233378 -0.0893344482202421 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10869245:A:T chr22 10869245 T A 49 0.775510204081633 -0.000256612703386439 0.0120043742436034 0.0195877231884075 -0.218735018743642 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10873502:A:T chr22 10873502 T A 49 0.785714285714286 -0.00101301121523807 0.0143193735900432 0.02229020610666 -0.0894261045488206 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10875136:A:T chr22 10875136 T A 49 0.612244897959184 0.0012474062606688 0.0152689190295992 0.0234706127988181 -0.0379422249888425 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10876397:A:T chr22 10876397 T A 49 0.591836734693878 0.00106651907743389 0.0145322636856398 0.0225513790010636 -0.0777082168413928 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10879323:A:T chr22 10879323 T A 49 0.938775510204082 -0.000872447498088565 0.0137766114220814 0.0216336873857719 -0.119502397534534 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10879425:A:T chr22 10879425 T A 49 0.744897959183674 -0.00714519654744078 0.0353108218647957 0.0562175302493262 0.855665030647933 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10880173:A:T chr22 10880173 T A 49 0.948979591836735 -0.000173268488437534 0.0118928948028806 0.0194642553081967 -0.225049714708963 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10885622:A:T chr22 10885622 T A 49 0.948979591836735 0.000422516061983151 0.0123385089389863 0.0199616093168357 -0.199819364045547 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10885916:A:T chr22 10885916 T A 49 0.938775510204082 -0.00116074855801232 0.0149133053085156 0.023023887057392 -0.0569657633546425 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10888434:A:T chr22 10888434 T A 49 0.622448979591837 -0.000134152264377235 0.0118548632157459 0.0194222814370877 -0.22720166167711 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10889177:A:T chr22 10889177 T A 49 0.63265306122449 -0.00244682968870499 0.0201974961950952 0.0301980000338244 0.217838848786149 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10889662:A:T chr22 10889662 T A 49 0.897959183673469 0.00141231928039443 0.0159539158318902 0.0243465592214346 -0.00137102129503985 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10889761:A:T chr22 10889761 T A 49 0.816326530612245 0.00061835503596871 0.0128895468686512 0.020590441235766 -0.168857538364139 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10890651:A:T chr22 10890651 T A 49 0.520408163265306 -7.22706183647267e-05 0.0118141139043835 0.0193773916483668 -0.229507514853167 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10894169:A:T chr22 10894169 T A 49 0.622448979591837 -0.00155716725698563 0.0165593984364996 0.0251373938662744 0.0308550262492485 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10896743:A:T chr22 10896743 T A 49 0.918367346938776 -0.000462974192935844 0.0124400020817192 0.0200762883680375 -0.194167851309017 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10897257:A:T chr22 10897257 T A 49 0.73469387755102 0.0016227366328877 0.0168335501456998 0.0255004585362545 0.045464445426918 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10901738:A:T chr22 10901738 T A 49 0.959183673469388 -0.000909198480433952 0.0139158224278542 0.021800784727605 -0.111748769444665 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10907041:A:T chr22 10907041 T A 49 0.724489795918367 0.00178784290913663 0.0175217835263059 0.0264253945155558 0.0817331202354131 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10909660:A:T chr22 10909660 T A 49 0.76530612244898 -0.00236423177628821 0.0198701138323569 0.029721736375359 0.201616571143746 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10909667:A:T chr22 10909667 T A 49 0.63265306122449 0.0029571589999245 0.0221635770223037 0.033141105027137 0.313079033756035 susie_0 susie_0 susie_0 0 0 0 fmr.rds -test_study context2 ENSG00000283047 susie chr22:10913450:A:T chr22 10913450 T A 49 0.591836734693878 0.000239944101447909 0.0119788610080367 0.0195594077457434 -0.220197974055847 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10414272:A:T chr22 10414272 T A 49 0.5 0.000153019578725139 0.0144288564217271 0.0422294340699407 -0.133220204651551 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10416111:A:T chr22 10416111 T A 49 0.826530612244898 -0.000603860689772282 0.0148158901303095 0.0429959514556101 -0.11643705517846 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10416669:A:T chr22 10416669 T A 49 0.622448979591837 0.00323325937378704 0.0212563863985421 0.0572662323766142 0.178139054821969 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10420511:A:T chr22 10420511 T A 49 0.928571428571429 0.000636193720677582 0.0148594220291535 0.0430833180523028 -0.11432036824199 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10424460:A:T chr22 10424460 T A 49 0.73469387755102 0.0022584046255601 0.0185710759283631 0.0509871325158945 0.0500817586442048 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10424703:A:T chr22 10424703 T A 49 0.724489795918367 -0.000827368270516365 0.0151558737190905 0.0436786644721743 -0.101661495997501 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10425071:A:T chr22 10425071 T A 49 0.795918367346939 -0.000335110491083802 0.0145321885331867 0.0424332092508124 -0.128611266438333 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10425470:A:T chr22 10425470 T A 49 0.938775510204082 -0.000848391985658998 0.0151920264616053 0.0437519315097458 -0.100007171065304 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10426294:A:T chr22 10426294 T A 49 0.663265306122449 -0.000590424035802773 0.0147980677044866 0.0429608247117984 -0.116991255254973 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10427068:A:T chr22 10427068 T A 49 0.775510204081633 -0.000856264068608816 0.0152056031664697 0.0437797537086477 -0.0992384315637308 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10438124:A:T chr22 10438124 T A 49 0.73469387755102 0.000340708778456329 0.0145365809066651 0.0424418162462679 -0.128453166748401 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10443846:A:T chr22 10443846 T A 49 0.887755102040816 0.00268181296409114 0.019735680276661 0.0536576698659246 0.10555353164503 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10444153:A:T chr22 10444153 T A 49 0.795918367346939 0.00074697297111901 0.0150234295860538 0.043412398715128 -0.107044493790848 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10453438:A:T chr22 10453438 T A 49 0.836734693877551 0.00169085670256816 0.0170611819742875 0.0476595766927019 -0.019042720091458 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10456378:A:T chr22 10456378 T A 49 0.714285714285714 -0.00208485641169614 0.0180993358488641 0.0499323675029959 0.0263232278378159 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10456420:A:T chr22 10456420 T A 49 0.551020408163265 0.0149687997473156 0.045393142517013 0.131405479675753 1.11465471979825 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10465259:A:T chr22 10465259 T A 49 0.469387755102041 0.0003174959962731 0.0145189109771606 0.0424070246924617 -0.129178867122572 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10465368:A:T chr22 10465368 T A 49 0.948979591836735 0.00120244471653497 0.0158926320132907 0.045187646683033 -0.0695074006021547 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10465522:A:T chr22 10465522 T A 49 0.714285714285714 0.00036554411806626 0.014556732132737 0.0424816504791944 -0.127558466540281 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10467002:A:T chr22 10467002 T A 49 0.663265306122449 0.00185731048512885 0.0174928457048 0.0485958802525648 -0.000767754852928626 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10469754:A:T chr22 10469754 T A 49 0.826530612244898 -0.0001826363776642 0.0144405034618968 0.0422523706114409 -0.132694679650587 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10470543:A:T chr22 10470543 T A 49 0.540816326530612 -0.00100898403605269 0.0154899121739187 0.044358186005038 -0.0869375899152503 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10475014:A:T chr22 10475014 T A 49 0.673469387755102 -0.00257137509191762 0.0194311623784542 0.0529499666956926 0.0916075067337042 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10475701:A:T chr22 10475701 T A 49 0.673469387755102 0.00160465324070164 0.0168430923304327 0.0471908432804908 -0.0285163756918668 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10478619:A:T chr22 10478619 T A 49 0.826530612244898 -0.00034645197363987 0.0145410864152783 0.0424507896951674 -0.128215379207759 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10479755:A:T chr22 10479755 T A 49 0.928571428571429 -9.53164217840661e-05 0.0144119573536021 0.0421962824814047 -0.133921895905228 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10481230:A:T chr22 10481230 T A 49 0.816326530612245 0.000331032172139771 0.0145291341837509 0.0424270277187633 -0.128824519828442 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10486457:A:T chr22 10486457 T A 49 0.755102040816326 -0.000118216959310805 0.0144177241170245 0.0422076024139685 -0.13367751455528 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10486638:A:T chr22 10486638 T A 49 0.836734693877551 0.000519077123791038 0.0147105596537019 0.0427862912492463 -0.120969723470095 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10491705:A:T chr22 10491705 T A 49 0.959183673469388 0.00104853962680905 0.0155684272306822 0.0445194925454182 -0.0832837833455757 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10493851:A:T chr22 10493851 T A 49 0.642857142857143 -0.00061084537406908 0.01482482209006 0.0430144914200165 -0.115674893490227 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10494665:A:T chr22 10494665 T A 49 0.581632653061224 0.000447125766617644 0.0146322452025726 0.0426311917960731 -0.124207733843097 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10497299:A:T chr22 10497299 T A 49 0.693877551020408 -0.00148950814352092 0.0165586693600585 0.0465843533490821 -0.0409548829966353 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10499223:A:T chr22 10499223 T A 49 0.602040816326531 0.000120734630356185 0.0144184204885723 0.042208992072167 -0.133635066270953 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10499732:A:T chr22 10499732 T A 49 0.775510204081633 -0.00287984086012695 0.020282974894013 0.0549406765215563 0.131727196275495 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10500104:A:T chr22 10500104 T A 49 0.86734693877551 0.000566737735531379 0.0147679716615721 0.0429006354066866 -0.118409282135595 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10500354:A:T chr22 10500354 T A 49 0.795918367346939 0.00328152877429355 0.0213886033820013 0.0575866551835745 0.184319245457062 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10502036:A:T chr22 10502036 T A 49 0.571428571428571 -0.000923168464334126 0.0153257558059592 0.0440242872142022 -0.0936322789923539 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10506439:A:T chr22 10506439 T A 49 0.704081632653061 -0.000598240550560071 0.0148084095074183 0.0429811708425872 -0.116688832398317 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10507706:A:T chr22 10507706 T A 49 0.775510204081633 -0.00121006569474497 0.0159090431742567 0.0452223946872833 -0.0684555310638518 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10509098:A:T chr22 10509098 T A 49 0.673469387755102 -0.00124059816577258 0.0159766997615404 0.0453627115577616 -0.0656548701634886 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10519036:A:T chr22 10519036 T A 49 0.714285714285714 -0.000853174758212939 0.0152003151415195 0.0437688063160109 -0.0995941075241076 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10519627:A:T chr22 10519627 T A 49 0.887755102040816 0.000819729188109912 0.0151425330667037 0.0436524309252031 -0.101869960762458 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10521008:A:T chr22 10521008 T A 49 0.816326530612245 -0.00105576252588807 0.0155831502507516 0.0445493968584518 -0.0827931785807184 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10525486:A:T chr22 10525486 T A 49 0.857142857142857 -0.0010687296952719 0.0156095210870424 0.0446034922797774 -0.0816727015871817 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10525507:A:T chr22 10525507 T A 49 0.642857142857143 -0.00334130707889536 0.0215517367329977 0.0579845711018788 0.191542231357813 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10526047:A:T chr22 10526047 T A 49 0.775510204081633 0.00141056064363301 0.0163682628265991 0.0461829610339277 -0.0485949189468513 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10528275:A:T chr22 10528275 T A 49 0.877551020408163 0.000409403713090564 0.0145955929606443 0.0425585153936261 -0.125854512014832 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10528863:A:T chr22 10528863 T A 49 0.571428571428571 0.00880661595279213 0.0344864780250485 0.0941193452830942 0.733701555489875 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10529203:A:T chr22 10529203 T A 49 0.744897959183674 -0.000830310415027098 0.0151607087021983 0.0436888359540337 -0.101248575849206 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10529629:A:T chr22 10529629 T A 49 0.714285714285714 -0.00390750792067321 0.0230813952889125 0.0617779011616739 0.262759659665939 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10532120:A:T chr22 10532120 T A 49 0.785714285714286 0.00116591456114767 0.0158132811514506 0.0450234572323724 -0.0728528753175817 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10534681:A:T chr22 10534681 T A 49 0.826530612244898 0.00193589933108871 0.0177004480092057 0.049050748796807 0.00804503715328331 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10536789:A:T chr22 10536789 T A 49 0.673469387755102 -0.00342077824369247 0.0217684864912331 0.0585142702856675 0.201593349524243 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10540221:A:T chr22 10540221 T A 49 0.642857142857143 0.00341164529726655 0.0217438256442685 0.0584530837535193 0.200719373079192 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10542264:A:T chr22 10542264 T A 49 0.622448979591837 -0.00147553566893929 0.0165242665338469 0.0465125620397847 -0.0419101985198021 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10544529:A:T chr22 10544529 T A 49 0.673469387755102 -0.00276660508903336 0.0199702991895789 0.0542046624626997 0.117099256556786 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10546683:A:T chr22 10546683 T A 49 0.816326530612245 -0.00310984866038984 0.0209169548762395 0.0564502588352989 0.16154320191031 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10552638:A:T chr22 10552638 T A 49 0.806122448979592 -0.00441152916745235 0.0244069404653619 0.065177649042568 0.321659703597203 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10555952:A:T chr22 10555952 T A 49 0.724489795918367 -0.000714938946070954 0.0149739311350186 0.0433126081451954 -0.109376019987953 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10556391:A:T chr22 10556391 T A 49 0.826530612244898 -0.00055875100178528 0.0147579399089221 0.0428808395072913 -0.118749092395875 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10557763:A:T chr22 10557763 T A 49 0.785714285714286 -0.000895041789244013 0.0152746027674798 0.043919708793878 -0.0961924375279642 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10559814:A:T chr22 10559814 T A 49 0.704081632653061 0.000448317836517822 0.0146335013826385 0.0426335846469253 -0.124204893663028 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10562607:A:T chr22 10562607 T A 49 0.602040816326531 0.00160566616001438 0.0168454309911987 0.0471963617906871 -0.0281859642918437 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10567672:A:T chr22 10567672 T A 49 0.928571428571429 0.000389447127156632 0.0145773504050413 0.0425225179095629 -0.126601063135896 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10573130:A:T chr22 10573130 T A 49 0.602040816326531 -0.000725539160366337 0.0149899141699431 0.0433452433597391 -0.108397853198549 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10574455:A:T chr22 10574455 T A 49 0.928571428571429 0.00270973592587687 0.0198138717482024 0.053836614841723 0.110537002272375 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10577070:A:T chr22 10577070 T A 49 0.551020408163265 0.00690901681646654 0.0304404315984676 0.0818534475599002 0.577259791985961 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10579383:A:T chr22 10579383 T A 49 0.5 -0.00110438311677557 0.0156829558564355 0.0447546400501674 -0.0784273066057024 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10580355:A:T chr22 10580355 T A 49 0.704081632653061 0.00225243272645541 0.018553891304435 0.0509509774372955 0.0481700406900671 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10580442:A:T chr22 10580442 T A 49 0.622448979591837 -0.00155980460930676 0.0167313364738663 0.0469518207412428 -0.0334187752529913 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10581284:A:T chr22 10581284 T A 49 0.755102040816326 -0.00227284149456744 0.0186100001243437 0.0510764395878233 0.0513540054289192 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10588433:A:T chr22 10588433 T A 49 0.602040816326531 0.00444670465475063 0.0244987758461552 0.0654141017146013 0.326476240888105 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10588553:A:T chr22 10588553 T A 49 0.775510204081633 0.00275126420761254 0.0199277188167208 0.0541055666799988 0.114841324282928 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10588781:A:T chr22 10588781 T A 49 0.806122448979592 0.000400325244031286 0.0145871892023599 0.042541927862986 -0.126200761150461 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10592697:A:T chr22 10592697 T A 49 0.86734693877551 0.00462591353544643 0.0249598914803628 0.0666244756324671 0.345992145208538 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10596659:A:T chr22 10596659 T A 49 0.908163265306122 0.000352537559158784 0.0145461411228414 0.042460469313863 -0.128158452523599 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10598564:A:T chr22 10598564 T A 49 0.76530612244898 -0.000682725877810685 0.0149256818234144 0.0432160319456578 -0.111376761020026 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10603496:A:T chr22 10603496 T A 49 0.897959183673469 -0.000956123770438099 0.0153878408603609 0.0441498348259046 -0.0913580202301718 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10606036:A:T chr22 10606036 T A 49 0.489795918367347 -0.00107507625801092 0.0156222941848091 0.0446301800189158 -0.0808928942501997 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10608228:A:T chr22 10608228 T A 49 0.571428571428571 -0.000931615882687598 0.0153419381920907 0.0440560898552661 -0.0934931795495806 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10610284:A:T chr22 10610284 T A 49 0.806122448979592 -0.00227916592566684 0.0186271960000045 0.0511155297298096 0.052087232966205 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10610830:A:T chr22 10610830 T A 49 0.693877551020408 -0.00242716556727957 0.0190330370457315 0.0520376644670131 0.0716149335648365 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10610843:A:T chr22 10610843 T A 49 0.897959183673469 -0.000987160143658598 0.0154471456387345 0.0442711837944242 -0.0885990433684272 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10612814:A:T chr22 10612814 T A 49 0.755102040816326 0.0006419994071869 0.014867266678508 0.043099455219085 -0.113737502862108 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10616762:A:T chr22 10616762 T A 49 0.540816326530612 -0.00627775523680262 0.0289975597873362 0.0776880831190707 0.518576141427621 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10618998:A:T chr22 10618998 T A 49 0.693877551020408 0.00493867801741581 0.0257545366384574 0.0687331293179465 0.380638415698376 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10623771:A:T chr22 10623771 T A 49 0.63265306122449 0.00245852598915191 0.0191196822106866 0.052234788926145 0.0762115434962539 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10629671:A:T chr22 10629671 T A 49 0.602040816326531 7.69562707481133e-05 0.0144082256965693 0.0421889559694912 -0.134081680764871 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10630095:A:T chr22 10630095 T A 49 0.602040816326531 0.0013743730928797 0.0162829790592836 0.0460030115195499 -0.0524862843522854 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10632977:A:T chr22 10632977 T A 49 0.63265306122449 0.004007295855663 0.0233470207175625 0.0624496598308748 0.275136923712309 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10633568:A:T chr22 10633568 T A 49 0.704081632653061 0.00212572017602273 0.018209786255617 0.0501782625051638 0.0318072866469103 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10633778:A:T chr22 10633778 T A 49 0.785714285714286 0.000260939189011689 0.014481067918654 0.042332231127818 -0.130924743682023 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10634174:A:T chr22 10634174 T A 49 0.755102040816326 -0.00324128694199797 0.0212779079320956 0.0573200094691056 0.178562082453516 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10636554:A:T chr22 10636554 T A 49 0.673469387755102 0.00163287167955002 0.0169138953388551 0.0473430220438932 -0.0252763064937133 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10637126:A:T chr22 10637126 T A 49 0.908163265306122 -0.0029468651091495 0.0204690277671685 0.0553776553053907 0.14178583295377 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10637834:A:T chr22 10637834 T A 49 0.928571428571429 -0.00012096576426377 0.014418475625043 0.0422091211151668 -0.133621852894041 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10643179:A:T chr22 10643179 T A 49 0.63265306122449 0.00195084329565025 0.0177396416699646 0.049138388201129 0.0103294034124881 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10645758:A:T chr22 10645758 T A 49 0.979591836734694 -0.000234875279528479 0.0144660032294441 0.0423025714008126 -0.131574956204464 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10646447:A:T chr22 10646447 T A 49 0.683673469387755 -0.00469818019697508 0.0251450408510417 0.0671115763428368 0.354422042976444 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10651999:A:T chr22 10651999 T A 49 0.693877551020408 -0.000137148972720829 0.0144233983210489 0.0422187809539599 -0.133415918316736 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10653467:A:T chr22 10653467 T A 49 0.836734693877551 0.000931678670014064 0.0153420403296765 0.044056328699644 -0.093475093378849 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10656033:A:T chr22 10656033 T A 49 0.673469387755102 -0.00378002517644005 0.0227403783485632 0.0609204385881633 0.247075921536838 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10656463:A:T chr22 10656463 T A 49 0.571428571428571 0.00148978965358164 0.0165592722334404 0.0465858328983842 -0.0408366831040654 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10656692:A:T chr22 10656692 T A 49 0.836734693877551 -0.00174313555747559 0.0171953928150827 0.0479494225915766 -0.0133226142605954 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10658132:A:T chr22 10658132 T A 49 0.755102040816326 -5.91117567307087e-05 0.0144053630014832 0.0421833297554859 -0.134207713142562 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10659633:A:T chr22 10659633 T A 49 0.704081632653061 0.00097187531412374 0.015417647541363 0.0442110796531038 -0.089826418123912 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10661938:A:T chr22 10661938 T A 49 0.887755102040816 0.00068172154001607 0.0149242985574239 0.0432130771351058 -0.111531973481322 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10662883:A:T chr22 10662883 T A 49 0.785714285714286 0.000160715400401135 0.0144316339708914 0.0422349984707191 -0.133043429554514 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10664101:A:T chr22 10664101 T A 49 0.908163265306122 0.000173139696521488 0.0144365480838129 0.0422445789876031 -0.132873955106352 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10666159:A:T chr22 10666159 T A 49 0.816326530612245 0.000735602911772576 0.0150057550594995 0.0433765499155419 -0.107976866977872 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10666369:A:T chr22 10666369 T A 49 0.510204081632653 -1.11064657553627e-05 0.0144013816452616 0.0421755141525338 -0.134378720743762 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10667183:A:T chr22 10667183 T A 49 0.918367346938776 0.000885817312730313 0.0152578591433163 0.0438859930319273 -0.0967902200257561 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10670967:A:T chr22 10670967 T A 49 0.714285714285714 0.00117440967435146 0.0158313141187679 0.0450614096156899 -0.0717644998288654 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10671410:A:T chr22 10671410 T A 49 0.693877551020408 0.00136571558654784 0.0162627619920727 0.0459603582574175 -0.0534448451141875 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10674639:A:T chr22 10674639 T A 49 0.63265306122449 -0.00270536278901926 0.0198011528345057 0.053808967857617 0.10916494707492 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10676894:A:T chr22 10676894 T A 49 0.857142857142857 0.00126300279245049 0.0160270555998726 0.0454670630623942 -0.0637130282725654 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10677327:A:T chr22 10677327 T A 49 0.551020408163265 0.00141749718029045 0.0163850184825508 0.046217665478046 -0.0481710723596332 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10682445:A:T chr22 10682445 T A 49 0.642857142857143 0.00120512774774904 0.0158983269587998 0.0451998793502214 -0.0690569248941336 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10682474:A:T chr22 10682474 T A 49 0.551020408163265 0.000827080343860262 0.0151553112284766 0.0436776724043451 -0.101611301240774 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10683073:A:T chr22 10683073 T A 49 0.826530612244898 0.00376515876131054 0.0227001315784857 0.0608209759812777 0.244804267688988 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10689363:A:T chr22 10689363 T A 49 0.887755102040816 0.00123408791599653 0.0159621951215089 0.0453326042427713 -0.0662568464500582 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10691141:A:T chr22 10691141 T A 49 0.857142857142857 -0.00052670888747927 0.0147193279074826 0.0428039820680154 -0.120446312289795 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10692359:A:T chr22 10692359 T A 49 0.612244897959184 0.00292988191576072 0.0204217492952279 0.0552669147832231 0.139059007208855 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10697350:A:T chr22 10697350 T A 49 0.653061224489796 0.00116120763249564 0.0158029317459325 0.0450025992638295 -0.0730364539926939 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10698587:A:T chr22 10698587 T A 49 0.714285714285714 0.0015313564230726 0.0166612639584701 0.046801968257233 -0.036695717258846 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10703176:A:T chr22 10703176 T A 49 0.591836734693878 -0.00029628702268472 0.0145039463775406 0.0423773139427249 -0.129933246858886 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10705627:A:T chr22 10705627 T A 49 0.846938775510204 0.000357694729642437 0.0145501974607137 0.0424687706953297 -0.127826835594534 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10710822:A:T chr22 10710822 T A 49 0.938775510204082 0.00116313923354616 0.0158075814468083 0.0450110722974166 -0.0733979501508335 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10712984:A:T chr22 10712984 T A 49 0.846938775510204 -9.43934035704948e-05 0.0144117829633967 0.0421958910648751 -0.133955264268999 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10714851:A:T chr22 10714851 T A 49 0.724489795918367 0.000834791980887143 0.0151684719025173 0.0437043698668609 -0.100990996929102 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10725148:A:T chr22 10725148 T A 49 0.73469387755102 -0.000740445338093457 0.0150132891283519 0.0433917575478022 -0.10761519697722 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10727419:A:T chr22 10727419 T A 49 0.795918367346939 -0.000937149960987176 0.0153520843379733 0.0440771108087533 -0.0928637474842013 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10730495:A:T chr22 10730495 T A 49 0.683673469387755 0.00267503458564934 0.0197172783439687 0.053613787938292 0.105081662661757 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10732634:A:T chr22 10732634 T A 49 0.73469387755102 0.00343583315408437 0.02181009303904 0.0586140352099588 0.204263811260518 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10733083:A:T chr22 10733083 T A 49 0.918367346938776 -0.000548459979504605 0.0147453813293217 0.0428557065269207 -0.119367227053836 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10735386:A:T chr22 10735386 T A 49 0.897959183673469 0.00165874688369111 0.0169800379269573 0.0474833709170256 -0.0232088014724986 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10735420:A:T chr22 10735420 T A 49 0.683673469387755 0.000778383395593426 0.0150739032667187 0.0435137626011634 -0.104970068927976 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10737524:A:T chr22 10737524 T A 49 0.714285714285714 0.00243256720969479 0.0190479276100468 0.0520715924274914 0.0723727630296417 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10742047:A:T chr22 10742047 T A 49 0.704081632653061 -0.00169238870528289 0.0170650169402166 0.0476680475832857 -0.018780300608822 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10746455:A:T chr22 10746455 T A 49 0.785714285714286 -0.00381581697933483 0.0228361806789111 0.0611612358392535 0.251305177508223 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10757405:A:T chr22 10757405 T A 49 0.693877551020408 0.00110281979931664 0.015679880214351 0.0447479087981055 -0.0787582214583433 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10761055:A:T chr22 10761055 T A 49 0.836734693877551 0.0050734140804985 0.0260926630500897 0.0696398306277136 0.395501740329878 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10761283:A:T chr22 10761283 T A 49 0.63265306122449 -0.000813174989293138 0.0151315369087119 0.0436300523023708 -0.102437602019186 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10762562:A:T chr22 10762562 T A 49 0.857142857142857 0.00174128721777382 0.017190604800785 0.0479391157889577 -0.0134898799963684 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10764432:A:T chr22 10764432 T A 49 0.642857142857143 -0.000447967769001326 0.0146330729183697 0.0426328845691886 -0.124142326708367 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10764521:A:T chr22 10764521 T A 49 0.897959183673469 0.000724029377441837 0.0149879150695799 0.0433405457432013 -0.108841065922822 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10773150:A:T chr22 10773150 T A 49 0.724489795918367 -0.000212425965828369 0.0144543004951791 0.0422794864695721 -0.132111150363634 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10775731:A:T chr22 10775731 T A 49 0.642857142857143 0.000603016901702947 0.0148146389468542 0.0429937180920675 -0.116353452121263 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10780593:A:T chr22 10780593 T A 49 0.969387755102041 0.000824448907657052 0.0151506275369974 0.0436686208480915 -0.101604478431013 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10786551:A:T chr22 10786551 T A 49 0.918367346938776 0.000471542985250519 0.0146576627309041 0.0426814227504108 -0.123185230010107 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10788473:A:T chr22 10788473 T A 49 0.714285714285714 -0.00316528242491778 0.0210693490789037 0.056816509003515 0.168745553732477 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10791509:A:T chr22 10791509 T A 49 0.928571428571429 -0.00299297254355437 0.0205954238927228 0.0556806396078031 0.146816239776096 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10793469:A:T chr22 10793469 T A 49 0.918367346938776 -0.00484903822299306 0.0255288696008054 0.0681281736525896 0.371553614776958 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10798741:A:T chr22 10798741 T A 49 0.724489795918367 -0.00124368488881197 0.0159837836895553 0.0453769757617304 -0.0655776711397809 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10799206:A:T chr22 10799206 T A 49 0.744897959183674 -0.000180949434040444 0.0144397804975024 0.0422509552946314 -0.132722886105381 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10802154:A:T chr22 10802154 T A 49 0.714285714285714 0.000918482502948668 0.0153172939881726 0.0440066624468618 -0.0942121240981464 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10812259:A:T chr22 10812259 T A 49 0.755102040816326 -0.00110010574768493 0.0156740868564361 0.0447363199219433 -0.0788400348049906 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10824509:A:T chr22 10824509 T A 49 0.918367346938776 0.000700520017268827 0.0149521695456529 0.0432689067847559 -0.110341483108317 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10824856:A:T chr22 10824856 T A 49 0.704081632653061 0.00647231748543376 0.029447901028482 0.0789761370990545 0.537100475079296 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10828045:A:T chr22 10828045 T A 49 0.877551020408163 -0.0028407350789784 0.0201756404067517 0.0546853113209282 0.127468722810939 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10832058:A:T chr22 10832058 T A 49 0.530612244897959 0.00112078521408329 0.0157175445880279 0.0448252773056826 -0.0772367247992562 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10832995:A:T chr22 10832995 T A 49 0.510204081632653 0.000527913705225804 0.0147206737306411 0.0428068007337628 -0.120313796459864 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10833119:A:T chr22 10833119 T A 49 0.612244897959184 -0.00170412762238268 0.0170948600865913 0.0477328896501888 -0.0172945393903638 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10836135:A:T chr22 10836135 T A 49 0.897959183673469 -0.00158340959135694 0.0167897341289291 0.0470773012385791 -0.0305476282961475 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10836569:A:T chr22 10836569 T A 49 0.76530612244898 0.000146978260508332 0.0144266891202444 0.0422252364284976 -0.133280230515537 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10838751:A:T chr22 10838751 T A 49 0.938775510204082 -0.00129438810029357 0.0160981513892474 0.0456152681200251 -0.060696236500142 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10840270:A:T chr22 10840270 T A 49 0.693877551020408 -0.00131232160311396 0.0161389127691409 0.0457010294910127 -0.0586671083861333 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10844706:A:T chr22 10844706 T A 49 0.948979591836735 -0.000605896007446633 0.0148184127226433 0.0430013253645297 -0.116151587850779 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10845699:A:T chr22 10845699 T A 49 0.642857142857143 0.00207345593518351 0.0180684303482567 0.0498641589561024 0.0245932854340927 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10847565:A:T chr22 10847565 T A 49 0.744897959183674 -0.00270658742150105 0.0198049377735609 0.0538165161802283 0.109829478419095 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10855119:A:T chr22 10855119 T A 49 0.918367346938776 0.000594422668697948 0.0148033316034189 0.0429712016015804 -0.116828088590221 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10861184:A:T chr22 10861184 T A 49 0.877551020408163 -0.00295456537473039 0.0204895772180224 0.0554287454799245 0.141917714925923 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10864195:A:T chr22 10864195 T A 49 0.683673469387755 0.000302316790546433 0.0145080611370383 0.0423855545371231 -0.129687467429468 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10864324:A:T chr22 10864324 T A 49 0.714285714285714 0.00153670920830545 0.0166742054008565 0.0468301218046595 -0.0358648240548727 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10864947:A:T chr22 10864947 T A 49 0.571428571428571 0.000253252139557906 0.0144764360901621 0.0423231631455524 -0.131097783314724 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10865177:A:T chr22 10865177 T A 49 0.693877551020408 0.000248011512186891 0.0144734038525204 0.0423171383305246 -0.131256971306086 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10866468:A:T chr22 10866468 T A 49 0.724489795918367 -0.0022005865663896 0.0184125152056865 0.0506332282744146 0.0411904536431679 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10869245:A:T chr22 10869245 T A 49 0.775510204081633 -0.000391001708016061 0.0145788143191416 0.0425252588912889 -0.12661864527845 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10873502:A:T chr22 10873502 T A 49 0.785714285714286 -0.0027509496144108 0.0199270377622923 0.054103362645797 0.115040506984744 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10875136:A:T chr22 10875136 T A 49 0.612244897959184 0.00625770282634206 0.028950723025547 0.0775553755831844 0.516501989612791 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10876397:A:T chr22 10876397 T A 49 0.591836734693878 0.00142107864061695 0.0163932749801249 0.0462357578312531 -0.0474955518036447 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10879323:A:T chr22 10879323 T A 49 0.938775510204082 -0.000742682376878279 0.0150167555211528 0.0433988135137394 -0.107424565485501 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10879425:A:T chr22 10879425 T A 49 0.744897959183674 -0.00287482897977073 0.0202693928823198 0.05490774831275 0.131397986996487 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10880173:A:T chr22 10880173 T A 49 0.948979591836735 -0.00135333115578363 0.0162339006665559 0.0458996358339501 -0.0547509015204547 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10885622:A:T chr22 10885622 T A 49 0.948979591836735 -0.000752681460145352 0.0150324353042632 0.0434305673583816 -0.106624357282407 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10885916:A:T chr22 10885916 T A 49 0.938775510204082 -0.000483707284242283 0.0146706711546714 0.0427073734145325 -0.122544732713535 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10888434:A:T chr22 10888434 T A 49 0.622448979591837 -0.000311448799525194 0.0145146011504097 0.0423983513356766 -0.129457846138708 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10889177:A:T chr22 10889177 T A 49 0.63265306122449 -0.00480527530081916 0.0254179879514327 0.0678331623923326 0.366755034220343 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10889662:A:T chr22 10889662 T A 49 0.897959183673469 0.00131487785825342 0.0161451251949518 0.045713215990865 -0.0587828104678414 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10889761:A:T chr22 10889761 T A 49 0.816326530612245 -0.000892351686816871 0.0152696013561449 0.0439098637794354 -0.0962557249723543 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10890651:A:T chr22 10890651 T A 49 0.520408163265306 -0.000391921411497893 0.0145795604322347 0.0425268885599457 -0.126503160865131 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10894169:A:T chr22 10894169 T A 49 0.622448979591837 -0.00258947818875164 0.0194807049913548 0.0530657997666567 0.0934552115480736 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10896743:A:T chr22 10896743 T A 49 0.918367346938776 -0.00257756360393534 0.0194484667180613 0.0529892441443529 0.0927072819082671 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10897257:A:T chr22 10897257 T A 49 0.73469387755102 0.000810954814709159 0.0151279197047483 0.0436224994665421 -0.102726815903312 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10901738:A:T chr22 10901738 T A 49 0.959183673469388 0.000367383443704423 0.0145582457174541 0.0424847084885055 -0.12745658771675 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10907041:A:T chr22 10907041 T A 49 0.724489795918367 0.00162141792651415 0.0168850604211656 0.0472811113189311 -0.0265521397403759 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10909660:A:T chr22 10909660 T A 49 0.76530612244898 -0.0016393761743766 0.0169303330536297 0.0473782630843457 -0.0245781689791719 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10909667:A:T chr22 10909667 T A 49 0.63265306122449 0.00393963914322483 0.0231666653501817 0.0619946751390873 0.266256290814632 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context1 ENSG00000283047 susie chr22:10913450:A:T chr22 10913450 T A 49 0.591836734693878 -0.000531088277224891 0.0147244034448802 0.0428142479110751 -0.120135966725966 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10414272:A:T chr22 10414272 T A 49 0.5 0.00142368105539507 0.0167209799279218 0.045495552611159 -0.0653297768434438 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10416111:A:T chr22 10416111 T A 49 0.826530612244898 -0.00174997795217802 0.0175335033536922 0.0471717063294906 -0.0291224864904086 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10416669:A:T chr22 10416669 T A 49 0.622448979591837 0.00339971887395392 0.0220506205441344 0.0572317986237603 0.172476418502303 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10420511:A:T chr22 10420511 T A 49 0.928571428571429 0.00140122371371377 0.0166676922226545 0.0453871849541106 -0.0676401881752182 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10424460:A:T chr22 10424460 T A 49 0.73469387755102 0.0039486988394091 0.0235414984388879 0.0608104356707363 0.23720968960501 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10424703:A:T chr22 10424703 T A 49 0.724489795918367 -0.00137334001864059 0.0166021383203023 0.0452540332370842 -0.0706400348761705 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10425071:A:T chr22 10425071 T A 49 0.795918367346939 -4.25185208716828e-05 0.0147371870602008 0.0415902016500135 -0.154745992991907 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10425470:A:T chr22 10425470 T A 49 0.938775510204082 0.000814410112901512 0.015460711924503 0.042982995468115 -0.121789765334032 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10426294:A:T chr22 10426294 T A 49 0.663265306122449 -0.000449370886168262 0.0149659540949467 0.0420265350176584 -0.14431978616235 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10427068:A:T chr22 10427068 T A 49 0.775510204081633 0.000321246414838762 0.0148542546936951 0.0418130147661726 -0.149411799109931 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10438124:A:T chr22 10438124 T A 49 0.73469387755102 0.00226627414135362 0.0189146244144249 0.0501173174791727 0.0324636825092491 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10443846:A:T chr22 10443846 T A 49 0.887755102040816 0.000826310671351498 0.0154807697402977 0.0430220899356523 -0.120957235262361 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10444153:A:T chr22 10444153 T A 49 0.795918367346939 0.00160778039026855 0.0171713608963357 0.0464194540670646 -0.0450307514507331 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10453438:A:T chr22 10453438 T A 49 0.836734693877551 0.000721362012438755 0.0153119615259551 0.0426935719665387 -0.128627547044764 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10456378:A:T chr22 10456378 T A 49 0.714285714285714 -0.00410275285847969 0.0239530939027355 0.0618202982537472 0.254316584328955 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10456420:A:T chr22 10456420 T A 49 0.551020408163265 0.0119949566137144 0.0410323655267281 0.111377143390281 0.885184383480818 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10465259:A:T chr22 10465259 T A 49 0.469387755102041 -0.00088768431687199 0.0155875694068521 0.0432309366240504 -0.116155526085171 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10465368:A:T chr22 10465368 T A 49 0.948979591836735 0.000980333663961961 0.0157591728300841 0.0435682039365906 -0.108385797706161 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10465522:A:T chr22 10465522 T A 49 0.714285714285714 -0.000731669729596697 0.0153277327812308 0.0427241819916151 -0.127906443790993 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10467002:A:T chr22 10467002 T A 49 0.663265306122449 0.00231009165826106 0.0190348123828407 0.0503793873634494 0.0376909938126246 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10469754:A:T chr22 10469754 T A 49 0.826530612244898 -0.000463137176804201 0.0149800112973465 0.0420534636765117 -0.14368983201885 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10470543:A:T chr22 10470543 T A 49 0.540816326530612 -0.00198097488029316 0.0181413148756669 0.0484533266304741 -0.00226702076783733 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10475014:A:T chr22 10475014 T A 49 0.673469387755102 -0.00381941431775648 0.0231935737302449 0.0599644438187753 0.22206164156347 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10475701:A:T chr22 10475701 T A 49 0.673469387755102 0.000197139668575224 0.014780258037333 0.0416720616594177 -0.152784969678967 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10478619:A:T chr22 10478619 T A 49 0.826530612244898 0.000400930487239114 0.0149196283985785 0.0419378663083032 -0.146441017031401 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10479755:A:T chr22 10479755 T A 49 0.928571428571429 -0.00218459811629567 0.0186913684816265 0.0496331451246331 0.0222021150525484 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10481230:A:T chr22 10481230 T A 49 0.816326530612245 -0.000308253000122843 0.0148449047352664 0.0417951758089327 -0.149850330429386 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10486457:A:T chr22 10486457 T A 49 0.755102040816326 -0.00102659560248517 0.015849261703683 0.0437460219065736 -0.104407331553785 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10486638:A:T chr22 10486638 T A 49 0.836734693877551 0.00060272017395181 0.0151438955598689 0.0423684720047495 -0.136312701120938 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10491705:A:T chr22 10491705 T A 49 0.959183673469388 0.000803614816793456 0.0154427494779122 0.0429479269025931 -0.12267929339671 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10493851:A:T chr22 10493851 T A 49 0.642857142857143 0.000386401990897387 0.0149066998912025 0.0419131399856448 -0.147048171694134 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10494665:A:T chr22 10494665 T A 49 0.581632653061224 -0.000461957288289488 0.0149787916617922 0.0420511259038754 -0.143746023695054 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10497299:A:T chr22 10497299 T A 49 0.693877551020408 -0.00192035722903792 0.0179798880814384 0.0481106002700656 -0.00947142898829109 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10499223:A:T chr22 10499223 T A 49 0.602040816326531 8.40069253781217e-05 0.0147433079608246 0.041601828180566 -0.154464636677371 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10499732:A:T chr22 10499732 T A 49 0.775510204081633 -0.00147643352720993 0.016847589144429 0.0457539884594679 -0.059518861315659 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10500104:A:T chr22 10500104 T A 49 0.86734693877551 -0.000530252192895888 0.0150540128382674 0.0421955151583119 -0.140272194712167 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10500354:A:T chr22 10500354 T A 49 0.795918367346939 0.00360368490909112 0.0226085282209489 0.0585566068682646 0.196795797611822 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10502036:A:T chr22 10502036 T A 49 0.571428571428571 -0.001559396084453 0.0170507318858478 0.0461708399560533 -0.0502302672709719 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10506439:A:T chr22 10506439 T A 49 0.704081632653061 0.000996983181674629 0.0157912532819736 0.0436315004473874 -0.106900398154428 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10507706:A:T chr22 10507706 T A 49 0.775510204081633 -0.00250118002852771 0.0195620527629223 0.0515387360543875 0.0616943933162881 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10509098:A:T chr22 10509098 T A 49 0.673469387755102 -0.000338606497026479 0.014867329378576 0.041837959046939 -0.148819905663917 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10519036:A:T chr22 10519036 T A 49 0.714285714285714 -0.00015098401600839 0.0147616258184665 0.0416366282188961 -0.15364218337687 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10519627:A:T chr22 10519627 T A 49 0.887755102040816 0.000979168303267414 0.0157569279750824 0.0435638054192353 -0.108441784167056 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10521008:A:T chr22 10521008 T A 49 0.816326530612245 -0.00116486757927522 0.0161341627606828 0.0443122426551077 -0.0914722814374136 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10525486:A:T chr22 10525486 T A 49 0.857142857142857 -0.000772407334007943 0.0153918122560076 0.0428487289723334 -0.124982667582478 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10525507:A:T chr22 10525507 T A 49 0.642857142857143 -0.0033704570283997 0.0219702546068889 0.05704235156879 0.169022058935817 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10526047:A:T chr22 10526047 T A 49 0.775510204081633 -0.000417362617940545 0.0149348111000782 0.0419668776529468 -0.145803428818137 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10528275:A:T chr22 10528275 T A 49 0.877551020408163 -0.00057086693254172 0.0151031479100663 0.0422899884450207 -0.138113950641547 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10528863:A:T chr22 10528863 T A 49 0.571428571428571 0.00291365207215626 0.0207072260932417 0.0541138077589989 0.113379721962453 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10529203:A:T chr22 10529203 T A 49 0.744897959183674 0.000728463129273387 0.0153228046091469 0.042714620270542 -0.128122218273812 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10529629:A:T chr22 10529629 T A 49 0.714285714285714 -0.00349446095190776 0.0223103087534038 0.0578462677792674 0.183855856453893 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10532120:A:T chr22 10532120 T A 49 0.785714285714286 0.000199123917481279 0.0147811678181424 0.0416737932229473 -0.152741663575769 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10534681:A:T chr22 10534681 T A 49 0.826530612244898 0.00136994085796804 0.0165941451696534 0.0452379201626746 -0.0708408149692184 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10536789:A:T chr22 10536789 T A 49 0.673469387755102 -0.00410635149287645 0.0239626193741109 0.0618439712563271 0.25445147555077 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10540221:A:T chr22 10540221 T A 49 0.642857142857143 0.00161595463634531 0.0171918744332681 0.0464618430119641 -0.0441213128109405 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10542264:A:T chr22 10542264 T A 49 0.622448979591837 -0.00291700968748206 0.0207165526355041 0.0541350867600218 0.113809447033291 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10544529:A:T chr22 10544529 T A 49 0.673469387755102 -0.000679264031868415 0.0152494373275328 0.0425724222605162 -0.131435012049641 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10546683:A:T chr22 10546683 T A 49 0.816326530612245 -0.00328266928303343 0.0217286186041355 0.05647518196527 0.158253224230021 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10552638:A:T chr22 10552638 T A 49 0.806122448979592 -0.00312912758622191 0.021304609222644 0.0554876582895619 0.139696283119748 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10555952:A:T chr22 10555952 T A 49 0.724489795918367 -2.00938047399939e-05 0.0147355486675619 0.0415870903000211 -0.154820745524683 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10556391:A:T chr22 10556391 T A 49 0.826530612244898 -0.00092549345547063 0.0156561410493877 0.0433654538363081 -0.113063045597777 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10557763:A:T chr22 10557763 T A 49 0.785714285714286 -0.00122256174891976 0.0162594031810047 0.044562883113724 -0.0858212813075452 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10559814:A:T chr22 10559814 T A 49 0.704081632653061 0.00139154294810816 0.0166448571802648 0.0453407787108971 -0.0686716120930099 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10562607:A:T chr22 10562607 T A 49 0.602040816326531 0.0024742791060958 0.0194876165094707 0.0513740061285208 0.0583782127718284 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10567672:A:T chr22 10567672 T A 49 0.928571428571429 0.00207113618331231 0.018383523150278 0.0489706012644731 0.0084740499497136 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10573130:A:T chr22 10573130 T A 49 0.602040816326531 1.97398031603397e-05 0.0147355333412623 0.0415870603757502 -0.154822869157035 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10574455:A:T chr22 10574455 T A 49 0.928571428571429 0.00300839253440205 0.0209702662288039 0.0547158127777185 0.125618360631468 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10577070:A:T chr22 10577070 T A 49 0.551020408163265 0.0104915728085551 0.0382782018845141 0.102399323757615 0.794593677207425 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10579383:A:T chr22 10579383 T A 49 0.5 -0.000381462585806898 0.0149023902216534 0.0419049316747562 -0.14719345172552 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10580355:A:T chr22 10580355 T A 49 0.704081632653061 0.00240331919105282 0.019291541602582 0.0509417984218314 0.0494229210644197 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10580442:A:T chr22 10580442 T A 49 0.622448979591837 -0.00126777355287355 0.016359945722162 0.0447648093408959 -0.0813764163885341 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10581284:A:T chr22 10581284 T A 49 0.755102040816326 -0.00674208357013955 0.0304825317457661 0.0790310621129254 0.515391879108565 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10588433:A:T chr22 10588433 T A 49 0.602040816326531 0.00651712469639578 0.0299638839253286 0.0775834673456196 0.496016921969577 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10588553:A:T chr22 10588553 T A 49 0.775510204081633 0.00184854653006172 0.0177902388009402 0.0477103212906445 -0.0175655060110039 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10588781:A:T chr22 10588781 T A 49 0.806122448979592 0.00138057612198809 0.0166190602822501 0.0452884415582818 -0.0697630748492448 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10592697:A:T chr22 10592697 T A 49 0.86734693877551 0.00555181331551552 0.0276603724016912 0.071321274244225 0.405930270529617 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10596659:A:T chr22 10596659 T A 49 0.908163265306122 0.000308619715206588 0.0148451769404545 0.0417956727272573 -0.149878271987299 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10598564:A:T chr22 10598564 T A 49 0.76530612244898 -0.000268244221146076 0.0148184412039235 0.0417447443568867 -0.151046766218405 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10603496:A:T chr22 10603496 T A 49 0.897959183673469 -0.00146246369745332 0.0168138619424847 0.0456850317835302 -0.0610795250702356 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10606036:A:T chr22 10606036 T A 49 0.489795918367347 -0.00131613434515514 0.0164696179153745 0.0449859388414066 -0.0763822641368937 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10608228:A:T chr22 10608228 T A 49 0.571428571428571 0.000243779894751996 0.0148040114516035 0.0417172776006584 -0.151679605780749 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10610284:A:T chr22 10610284 T A 49 0.806122448979592 -0.00348514414397053 0.0222847890069277 0.0577857928511253 0.182628699059163 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10610830:A:T chr22 10610830 T A 49 0.693877551020408 -0.00464171646255694 0.0253673992702673 0.0653593138683441 0.313103188953515 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10610843:A:T chr22 10610843 T A 49 0.897959183673469 -0.000445306330651524 0.0149618853256887 0.0420187296510078 -0.144526983465911 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10612814:A:T chr22 10612814 T A 49 0.755102040816326 0.000873463946075404 0.0155622819776029 0.0431814917050212 -0.117159154185004 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10616762:A:T chr22 10616762 T A 49 0.540816326530612 -0.00328059216262495 0.0217229576601231 0.0564617176054896 0.158327953203739 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10618998:A:T chr22 10618998 T A 49 0.693877551020408 0.00846676963612193 0.0342535601814508 0.0899594419987451 0.653649139869758 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10623771:A:T chr22 10623771 T A 49 0.63265306122449 0.00291311563494497 0.0207057298518677 0.0541104138954055 0.113276286836578 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10629671:A:T chr22 10629671 T A 49 0.602040816326531 -0.00131737053288783 0.0164724464080834 0.0449916596803094 -0.0762421403686838 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10630095:A:T chr22 10630095 T A 49 0.602040816326531 0.00141997914939648 0.016712128107381 0.0454776302157857 -0.0655665172323571 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10632977:A:T chr22 10632977 T A 49 0.63265306122449 0.0019417424810167 0.0180367179717803 0.0482310156261627 -0.00701036345967199 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10633568:A:T chr22 10633568 T A 49 0.704081632653061 0.0038963666201619 0.0234008695469345 0.0604678826437809 0.230836956923177 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10633778:A:T chr22 10633778 T A 49 0.785714285714286 0.00046818778216186 0.0149852682102172 0.0420635335559686 -0.143461947380594 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10634174:A:T chr22 10634174 T A 49 0.755102040816326 -0.00211679627730902 0.018507023015438 0.0492357585197782 0.0139331506777152 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10636554:A:T chr22 10636554 T A 49 0.673469387755102 0.00444678082403043 0.0248605297121281 0.0640790361004835 0.291713571386637 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10637126:A:T chr22 10637126 T A 49 0.908163265306122 -0.00248941431149516 0.0195295818042685 0.0514665651289743 0.0607185350029957 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10637834:A:T chr22 10637834 T A 49 0.928571428571429 0.00031403534865895 0.0148490221827051 0.0418030266099026 -0.149664805176106 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10643179:A:T chr22 10643179 T A 49 0.63265306122449 0.00146007774359903 0.0168080492114944 0.0456733124284865 -0.0610991293813401 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10645758:A:T chr22 10645758 T A 49 0.979591836734694 0.00219786784691242 0.0187275158598685 0.0497114384911225 0.0236651195300551 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10646447:A:T chr22 10646447 T A 49 0.683673469387755 -0.00256107770090837 0.019727995293503 0.0519071314804118 0.0691376421915054 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10651999:A:T chr22 10651999 T A 49 0.693877551020408 0.000137252990018604 0.0147570217770246 0.041627885340302 -0.153837677699015 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10653467:A:T chr22 10653467 T A 49 0.836734693877551 0.0012444080709831 0.0163077898434374 0.0446598537253279 -0.0838822111365746 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10656033:A:T chr22 10656033 T A 49 0.673469387755102 -0.00866587543682086 0.0346674265791554 0.0912008695412238 0.669177953650541 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10656463:A:T chr22 10656463 T A 49 0.571428571428571 -6.70382319306975e-06 0.0147351299950527 0.0415862960427144 -0.154838340417735 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10656692:A:T chr22 10656692 T A 49 0.836734693877551 0.000175277141950887 0.0147708223946202 0.0416541180176772 -0.153212506213118 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10658132:A:T chr22 10658132 T A 49 0.755102040816326 7.90300678085278e-05 0.0147423627946931 0.0416000316457208 -0.154509969140281 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10659633:A:T chr22 10659633 T A 49 0.704081632653061 0.0010196382164219 0.0158355124028068 0.043718895074612 -0.104932892548954 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10661938:A:T chr22 10661938 T A 49 0.887755102040816 0.00128613665521634 0.0164013484008624 0.0448481585373752 -0.0795479642220032 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10662883:A:T chr22 10662883 T A 49 0.785714285714286 0.000574815521284053 0.0151080837345221 0.0422995096373422 -0.137859057646319 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10664101:A:T chr22 10664101 T A 49 0.908163265306122 -0.00123268202193746 0.016281733644317 0.0446076695378759 -0.084837858635512 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10666159:A:T chr22 10666159 T A 49 0.816326530612245 -0.000513408659144008 0.0150346131079697 0.0421582014338068 -0.141234293656708 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10666369:A:T chr22 10666369 T A 49 0.510204081632653 0.00118453161916862 0.01617643834297 0.0443967636365794 -0.0895063681577313 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10667183:A:T chr22 10667183 T A 49 0.918367346938776 -0.000887477543763418 0.0155872026202865 0.0432302128730966 -0.116181349186915 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10670967:A:T chr22 10670967 T A 49 0.714285714285714 0.0029615550330054 0.0208401068526708 0.0544179326952402 0.118755574641607 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10671410:A:T chr22 10671410 T A 49 0.693877551020408 0.00108513532979596 0.0159671078963243 0.0439795690696133 -0.0990376938022204 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10674639:A:T chr22 10674639 T A 49 0.63265306122449 -0.00287519237760456 0.0206003964562697 0.0538703641118982 0.108541422034317 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10676894:A:T chr22 10676894 T A 49 0.857142857142857 -0.000499369396407331 0.0150188494281259 0.0421279476669252 -0.141931902574293 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10677327:A:T chr22 10677327 T A 49 0.551020408163265 0.00225525218240406 0.018884431102359 0.0500516469344687 0.031099070831015 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10682445:A:T chr22 10682445 T A 49 0.642857142857143 0.00232143649978207 0.0190660183842 0.0504474605568473 0.0392543600217032 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10682474:A:T chr22 10682474 T A 49 0.551020408163265 -7.34817926093282e-05 0.0147413744092101 0.0415981605044327 -0.154543401096043 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10683073:A:T chr22 10683073 T A 49 0.826530612244898 0.00141452473673419 0.0166991775863349 0.0454512547209841 -0.0661748892682315 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10689363:A:T chr22 10689363 T A 49 0.887755102040816 0.000738215293923173 0.0153378467083707 0.0427438104583896 -0.127462661328064 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10691141:A:T chr22 10691141 T A 49 0.857142857142857 0.00238677808787932 0.0192459491171499 0.0508415209435655 0.0475317476825693 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10692359:A:T chr22 10692359 T A 49 0.612244897959184 0.0030418177076307 0.0210628430161374 0.0549290819236319 0.129217704945069 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10697350:A:T chr22 10697350 T A 49 0.653061224489796 0.000958873925387377 0.0157183485671349 0.0434878091299024 -0.110188886073884 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10698587:A:T chr22 10698587 T A 49 0.714285714285714 0.00236327945611009 0.0191812459792508 0.0506993980487962 0.0449024576711731 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10703176:A:T chr22 10703176 T A 49 0.591836734693878 -0.00229856714309003 0.0190032334529331 0.050310272549183 0.0366276532735473 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10705627:A:T chr22 10705627 T A 49 0.846938775510204 -0.00150435112788684 0.0169154492252979 0.0458928685409377 -0.0565201345549157 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10710822:A:T chr22 10710822 T A 49 0.938775510204082 -0.000483234416719729 0.0150012027088479 0.0420941395232302 -0.142643020992639 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10712984:A:T chr22 10712984 T A 49 0.846938775510204 -0.000134382324845569 0.0147561195607478 0.0416261629343637 -0.15389303322348 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10714851:A:T chr22 10714851 T A 49 0.724489795918367 -0.000915186684458652 0.0156372099418188 0.0433283563332849 -0.113791437659065 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10725148:A:T chr22 10725148 T A 49 0.73469387755102 0.000232257104619172 0.0147976902042566 0.0417052311805843 -0.151991487097526 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10727419:A:T chr22 10727419 T A 49 0.795918367346939 -0.00159495061433357 0.01713927011445 0.0463531355397776 -0.0465495314479274 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10730495:A:T chr22 10730495 T A 49 0.683673469387755 0.0017032089763921 0.0174131935438293 0.0469209166776916 -0.0343099020049937 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10732634:A:T chr22 10732634 T A 49 0.73469387755102 0.00120234211697605 0.0162151433690276 0.0444741216784302 -0.0879236982725219 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10733083:A:T chr22 10733083 T A 49 0.918367346938776 0.000434616571816733 0.0149513310687487 0.0419985196712453 -0.145006978732241 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10735386:A:T chr22 10735386 T A 49 0.897959183673469 0.00354207711604011 0.0224405444164421 0.0581556275046976 0.189868314194804 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10735420:A:T chr22 10735420 T A 49 0.683673469387755 5.68593475859495e-05 0.0147388493657992 0.041593359139775 -0.154669123426383 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10737524:A:T chr22 10737524 T A 49 0.714285714285714 0.00283033346242728 0.0204757663664449 0.0535871627132896 0.102942752429075 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10742047:A:T chr22 10742047 T A 49 0.704081632653061 0.00019563940277568 0.0147795790124748 0.041670764324487 -0.152826581828021 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10746455:A:T chr22 10746455 T A 49 0.785714285714286 -0.00242905385271224 0.0193626518091786 0.0510981097383385 0.052972074316234 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10757405:A:T chr22 10757405 T A 49 0.693877551020408 0.00123646056053264 0.0162901147782206 0.0446244493853021 -0.0845310646001693 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10761055:A:T chr22 10761055 T A 49 0.836734693877551 0.00472803975845524 0.0255901185064802 0.0659261040926479 0.32253417555071 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10761283:A:T chr22 10761283 T A 49 0.63265306122449 -0.00203157168431145 0.0182769705028824 0.0487425376435224 0.00367935862906937 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10762562:A:T chr22 10762562 T A 49 0.857142857142857 0.000621597832663572 0.0151689149053478 0.0424167749217323 -0.13510837418271 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10764432:A:T chr22 10764432 T A 49 0.642857142857143 -0.000789053573592174 0.0154187811963825 0.0429012385531842 -0.1237426386748 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10764521:A:T chr22 10764521 T A 49 0.897959183673469 0.00312169125641394 0.021284091102015 0.0554399384397845 0.139093682875327 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10773150:A:T chr22 10773150 T A 49 0.724489795918367 -0.00123622234737066 0.0162896226566638 0.0446233852563629 -0.0846783788713808 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10775731:A:T chr22 10775731 T A 49 0.642857142857143 0.00145095919077648 0.0167861825430741 0.045628524759239 -0.0623157497168558 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10780593:A:T chr22 10780593 T A 49 0.969387755102041 0.000613150496380208 0.0151576284898682 0.0423949965069916 -0.13562167139315 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10786551:A:T chr22 10786551 T A 49 0.918367346938776 -0.000478471318566448 0.0149961219686687 0.0420843510566368 -0.142954698295291 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10788473:A:T chr22 10788473 T A 49 0.714285714285714 -0.00337057970929902 0.0219705041242149 0.0570432394500952 0.168585251245075 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10791509:A:T chr22 10791509 T A 49 0.928571428571429 -0.00470479311431981 0.0255302021283227 0.0657735491064734 0.31977953626472 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10793469:A:T chr22 10793469 T A 49 0.918367346938776 -0.00405769180501177 0.0238329899444557 0.0615248126176061 0.249144445896813 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10798741:A:T chr22 10798741 T A 49 0.724489795918367 -0.000113668533198052 0.0147501417676408 0.0416148038604726 -0.15416553609919 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10799206:A:T chr22 10799206 T A 49 0.744897959183674 -0.000403841105967406 0.0149222725059264 0.0419429242296747 -0.146317950662393 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10802154:A:T chr22 10802154 T A 49 0.714285714285714 0.000835346836000705 0.0154961180670363 0.0430520859435048 -0.120211636376862 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10812259:A:T chr22 10812259 T A 49 0.755102040816326 -0.00301514795330254 0.0209888779465815 0.0547589776717223 0.125823001727833 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10824509:A:T chr22 10824509 T A 49 0.918367346938776 0.000832073222156897 0.0154905810909587 0.0430411861754831 -0.120614343516464 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10824856:A:T chr22 10824856 T A 49 0.704081632653061 0.00605813071737664 0.0288846492254248 0.0746156081015057 0.454470964332087 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10828045:A:T chr22 10828045 T A 49 0.877551020408163 4.53400608566367e-05 0.0147374755183121 0.0415907531873448 -0.154725764136114 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10832058:A:T chr22 10832058 T A 49 0.530612244897959 0.00412581351756252 0.0240144772805946 0.0619715254497892 0.257083069206716 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10832995:A:T chr22 10832995 T A 49 0.510204081632653 0.00027020442181332 0.0148196521053633 0.0417470562516304 -0.150982100104338 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10833119:A:T chr22 10833119 T A 49 0.612244897959184 -0.00124535861295431 0.0163098252356874 0.0446641124892001 -0.0835126215105282 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10836135:A:T chr22 10836135 T A 49 0.897959183673469 -0.000176204181425042 0.0147711970067518 0.0416548371176579 -0.153182995702641 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10836569:A:T chr22 10836569 T A 49 0.76530612244898 -0.000128864826916588 0.0147544250807962 0.0416229522900406 -0.153952872940199 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10838751:A:T chr22 10838751 T A 49 0.938775510204082 -0.000770065858778708 0.0153880774218483 0.0428414167741213 -0.125232257169095 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10840270:A:T chr22 10840270 T A 49 0.693877551020408 -0.00278749722789489 0.0203567687509217 0.0533175049894155 0.0977575569199416 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10844706:A:T chr22 10844706 T A 49 0.948979591836735 -0.00132270120596753 0.016484713147464 0.0450163539336705 -0.0758321529548634 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10845699:A:T chr22 10845699 T A 49 0.642857142857143 0.00153516222406678 0.0169909358878067 0.0460477962515493 -0.053056144979092 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10847565:A:T chr22 10847565 T A 49 0.744897959183674 -0.00284942160092399 0.0205288601689418 0.0537075172174828 0.105623922552475 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10855119:A:T chr22 10855119 T A 49 0.918367346938776 -1.95945038242946e-05 0.0147355251291402 0.0415870467596949 -0.154819651062584 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10861184:A:T chr22 10861184 T A 49 0.877551020408163 -0.00226050351275174 0.0188988258627712 0.0500829153935087 0.0318086713997635 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10864195:A:T chr22 10864195 T A 49 0.683673469387755 -0.00032311905947353 0.0148556328906508 0.0418156445298358 -0.149347574553465 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10864324:A:T chr22 10864324 T A 49 0.714285714285714 0.000373590426099819 0.0148956645547046 0.0418920570738965 -0.147542734376686 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10864947:A:T chr22 10864947 T A 49 0.571428571428571 -0.00105133041520881 0.0158984898160055 0.0438435697766932 -0.101987505460129 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10865177:A:T chr22 10865177 T A 49 0.693877551020408 0.00104625634181133 0.0158883753985802 0.0438234143486492 -0.102653284709974 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10866468:A:T chr22 10866468 T A 49 0.724489795918367 -0.00153349279766521 0.0169868179049929 0.0460393625449443 -0.0532016201693961 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10869245:A:T chr22 10869245 T A 49 0.775510204081633 -0.000396292222090763 0.0149154551002279 0.0419298782069836 -0.146646325681857 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10873502:A:T chr22 10873502 T A 49 0.785714285714286 -0.00152065238113035 0.0169552964382474 0.0459746278410491 -0.0546537734224366 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10875136:A:T chr22 10875136 T A 49 0.612244897959184 0.00181597263500157 0.0177049695284791 0.0475308638176536 -0.0215494266854411 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10876397:A:T chr22 10876397 T A 49 0.591836734693878 0.00159874163004118 0.0171487104069091 0.0463727149860921 -0.0459832149738193 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10879323:A:T chr22 10879323 T A 49 0.938775510204082 -0.00127333989815834 0.0163724920669504 0.0447899893937787 -0.0809287495581204 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10879425:A:T chr22 10879425 T A 49 0.744897959183674 -0.00801725105086967 0.0333040189438291 0.0871403215988293 0.620080363952413 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10880173:A:T chr22 10880173 T A 49 0.948979591836735 -0.000284147772847908 0.0148285355439442 0.0417639748465348 -0.150590793990048 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10885622:A:T chr22 10885622 T A 49 0.948979591836735 0.000636605009281575 0.0151892958641124 0.0424561146483294 -0.134201347886791 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10885916:A:T chr22 10885916 T A 49 0.938775510204082 -0.00171203321665524 0.0174357887131956 0.0469679988066615 -0.0332554216025922 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10888434:A:T chr22 10888434 T A 49 0.622448979591837 -0.000208700957114989 0.0147856887804489 0.0416823914007068 -0.15254035695997 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10889177:A:T chr22 10889177 T A 49 0.63265306122449 -0.00334895220767412 0.0219111016493476 0.0569032827255727 0.166274283289986 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10889662:A:T chr22 10889662 T A 49 0.897959183673469 0.00201466560173946 0.018231607356954 0.0486455703432855 0.00151031986578257 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10889761:A:T chr22 10889761 T A 49 0.816326530612245 0.000927682480893784 0.0156601848639648 0.0433733745966092 -0.112918831375046 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10890651:A:T chr22 10890651 T A 49 0.520408163265306 -0.00012165249351698 0.0147523238328114 0.0416189576555813 -0.154051916526933 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10894169:A:T chr22 10894169 T A 49 0.622448979591837 -0.00223015535413481 0.0188157464282043 0.0499025020678371 0.0279279104204394 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10896743:A:T chr22 10896743 T A 49 0.918367346938776 -0.00068108843990512 0.0152521155769937 0.0425775430627826 -0.131426916777105 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10897257:A:T chr22 10897257 T A 49 0.73469387755102 0.00228919016858281 0.0189774778298123 0.0502541632760874 0.035369568751004 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10901738:A:T chr22 10901738 T A 49 0.959183673469388 -0.00132945372062694 0.0165002415647143 0.0450477336185311 -0.0751425750096219 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10907041:A:T chr22 10907041 T A 49 0.724489795918367 0.0025157125451428 0.0196023312912233 0.0516278857281343 0.0637049158219478 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10909660:A:T chr22 10909660 T A 49 0.76530612244898 -0.00325333999883962 0.0216477687920603 0.0562860672232586 0.154766066649044 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10909667:A:T chr22 10909667 T A 49 0.63265306122449 0.00387790188999002 0.0233512095919895 0.0603470183170586 0.22880298120683 susie_0 susie_0 susie_0 0 0 0 fmr.rds +test_study context2 ENSG00000283047 susie chr22:10913450:A:T chr22 10913450 T A 49 0.591836734693878 0.000344700573923707 0.0148720863289183 0.0418470170497657 -0.14864196049315 susie_0 susie_0 susie_0 0 0 0 fmr.rds diff --git a/tests/fixtures/fine_mapping/expected/fine_mapping.ENSG00000283047.rds b/tests/fixtures/fine_mapping/expected/fine_mapping.ENSG00000283047.rds index 4a98e4658..deaa90a11 100644 Binary files a/tests/fixtures/fine_mapping/expected/fine_mapping.ENSG00000283047.rds and b/tests/fixtures/fine_mapping/expected/fine_mapping.ENSG00000283047.rds differ diff --git a/tests/fixtures/fine_mapping/expected_manifest.tsv b/tests/fixtures/fine_mapping/expected_manifest.tsv index 0c544313e..6d1a1dc1e 100644 --- a/tests/fixtures/fine_mapping/expected_manifest.tsv +++ b/tests/fixtures/fine_mapping/expected_manifest.tsv @@ -1,8 +1,8 @@ # expected-output regression manifest — fine_mapping # columns: output mode rtol atol notes -fine_mapping.ENSG00000283047.rds tolerant 1e-6 1e-8 QtlFineMappingResult (susie, --seed 1); deep all.equal via rds_compare.R. Reproducible run-to-run on one machine; the x86/ARM CI matrix may need a looser rtol — calibrate from the first CI run. -export_pip.tsv tolerant 1e-6 1e-8 fine_mapping_export.R pip view (identity + variant_id + pip) of the ENSG00000283047 FMR; deterministic reshaping. `source` col is the fmr basename (fixture built from a --seed 1 fit saved as fmr.rds so it matches the `fmr` fixture); no embedded absolute paths. -export_topLoci.tsv tolerant 1e-6 1e-8 fine_mapping_export.R topLoci view (getTopLoci, signal-cutoff 0) of the ENSG00000283047 FMR; deterministic reshaping, `source`=fmr.rds basename, no embedded absolute paths. +fine_mapping.ENSG00000283047.rds tolerant 1e-6 1e-8 QtlFineMappingResult (susie, --seed 1); deep all.equal via rds_compare.R. Reproducible run-to-run on one machine; the x86/ARM CI matrix may need a looser rtol — calibrate from the first CI run. Re-baselined for PR #1422 (SuSiE L default 10, greedy-L off): the fit now uses a FIXED 10 single effects instead of a greedy search that settled on 5, so alpha is 10x200 and the diffuse PIP mass roughly doubles (sum 9.89 -> 19.53, median per-variant ratio 2.085 ~ 10/5). Same 400 variants in the same order, top variant unchanged (chr22:10456420:A:T), and the locus still yields no credible sets. Turning greedy off is what makes this platform-stable: with it on, the retained-effect count was 5 on macOS and 10 on Linux, a shape difference no tolerance could absorb. +export_pip.tsv tolerant 1e-6 1e-8 fine_mapping_export.R pip view (identity + variant_id + pip) of the ENSG00000283047 FMR; deterministic reshaping. `source` col is the fmr basename (fixture built from a --seed 1 fit saved as fmr.rds so it matches the `fmr` fixture); no embedded absolute paths. Re-baselined for PR #1422 (SuSiE L default 10, greedy-L off): the fit now uses a FIXED 10 single effects instead of a greedy search that settled on 5, so alpha is 10x200 and the diffuse PIP mass roughly doubles (sum 9.89 -> 19.53, median per-variant ratio 2.085 ~ 10/5). Same 400 variants in the same order, top variant unchanged (chr22:10456420:A:T), and the locus still yields no credible sets. Turning greedy off is what makes this platform-stable: with it on, the retained-effect count was 5 on macOS and 10 on Linux, a shape difference no tolerance could absorb. +export_topLoci.tsv tolerant 1e-6 1e-8 fine_mapping_export.R topLoci view (getTopLoci, signal-cutoff 0) of the ENSG00000283047 FMR; deterministic reshaping, `source`=fmr.rds basename, no embedded absolute paths. Re-baselined for PR #1422 (SuSiE L default 10, greedy-L off): the fit now uses a FIXED 10 single effects instead of a greedy search that settled on 5, so alpha is 10x200 and the diffuse PIP mass roughly doubles (sum 9.89 -> 19.53, median per-variant ratio 2.085 ~ 10/5). Same 400 variants in the same order, top variant unchanged (chr22:10456420:A:T), and the locus still yields no credible sets. Turning greedy off is what makes this platform-stable: with it on, the retained-effect count was 5 on macOS and 10 on Linux, a shape difference no tolerance could absorb. export_marginals.tsv tolerant 1e-6 1e-8 fine_mapping_export.R marginals view (getMarginalEffects) of the ENSG00000283047 FMR; deterministic reshaping, `source`=fmr.rds basename, no embedded absolute paths. export_cs.tsv tolerant 1e-6 1e-8 fine_mapping_export.R cs view of the ENSG00000283047 FMR; the toy FMR has no credible sets so this is a valid header-only TSV; deterministic. top_loci.bed.gz tolerant 1e-6 1e-8 fine_mapping_top_loci_bed.R top-loci BED (getTopLoci joined to getMarginalEffects, signal-cutoff 0) from the committed mvSuSiE FMR; deterministic reshaping, basenames only, no embedded absolute paths. .gz decompressed before compare. diff --git a/tests/fixtures/mnm_regression/expected/expected_manifest.tsv b/tests/fixtures/mnm_regression/expected/expected_manifest.tsv index 5266bce73..97b5b972b 100644 --- a/tests/fixtures/mnm_regression/expected/expected_manifest.tsv +++ b/tests/fixtures/mnm_regression/expected/expected_manifest.tsv @@ -1,5 +1,5 @@ # expected-output regression manifest — mnm_regression (notebook tier) # columns: output mode rtol atol notes -univariate_bvsr.rds tolerant 1e-6 1e-8 susie_twas cell -> fine_mapping.R (QtlFineMappingResult for test_study ENSG00000283047 over qtl_mini) run with --seed 1 (the notebook `seed` parameter is forwarded to fine_mapping.R). Bit-identical across two seeded reruns; no embedded absolute paths. The x86/ARM CI matrix may need a looser rtol (calibrate from the first CI run). +univariate_bvsr.rds tolerant 1e-6 1e-8 susie_twas cell -> fine_mapping.R (QtlFineMappingResult for test_study ENSG00000283047 over qtl_mini) run with --seed 1 (the notebook `seed` parameter is forwarded to fine_mapping.R). Bit-identical across two seeded reruns; no embedded absolute paths. The x86/ARM CI matrix may need a looser rtol (calibrate from the first CI run). Re-baselined for PR #1422 (SuSiE L default 10, greedy-L off): the fit now uses a FIXED 10 single effects where the greedy search previously settled on 5, so alpha goes 5xP -> 10xP and the diffuse PIP mass scales with L. The locus yields no credible sets either way, so no conclusion changes. Greedy-off is what makes this platform-stable: with greedy on the retained count was 5 on macOS and 10 on Linux, a shape difference no tolerance could absorb. univariate_twas_weights.rds tolerant 1e-6 1e-8 susie_twas cell -> twas_weights.R (TwasWeights, same seed=1) for the same gene. Bit-identical across two seeded reruns; no embedded absolute paths. multicontext_bvsr.rds tolerant 1e-6 1e-8 mnm cell -> fine_mapping.R --methods mvsusie --joint-specification context (QtlFineMappingResult for test_study ENSG00000283047 over qtl_mini, contexts context1;context2) run with --seed 1. Byte-identical across two seeded reruns; no embedded absolute paths. diff --git a/tests/fixtures/mnm_regression/expected/univariate_bvsr.rds b/tests/fixtures/mnm_regression/expected/univariate_bvsr.rds index 4a98e4658..deaa90a11 100644 Binary files a/tests/fixtures/mnm_regression/expected/univariate_bvsr.rds and b/tests/fixtures/mnm_regression/expected/univariate_bvsr.rds differ diff --git a/tests/fixtures/qtl_rss_analysis/expected/expected_manifest.tsv b/tests/fixtures/qtl_rss_analysis/expected/expected_manifest.tsv new file mode 100644 index 000000000..fa91b6dee --- /dev/null +++ b/tests/fixtures/qtl_rss_analysis/expected/expected_manifest.tsv @@ -0,0 +1,5 @@ +# expected-output regression manifest — qtl_rss_analysis (notebook tier) +# columns: output mode rtol atol notes +qtl_sumstats.rds tolerant 1e-6 1e-8 generate_qtl_sumstats -> qtl_sumstats_construct.R: QtlSumStats for test_study/context1/ENSG00000283047 (200 variants of the gene's cis window, filtered out of the 16-gene TensorQTL nominal table by molecular_trait_id) with the qtl_mini genotypes attached as the ldSketch and summaryStatsQc applied. Deterministic (no RNG); byte-identical across two runs. normalize_paths: the ldSketch embeds the genotype path, basename-normalized by rds_compare.R. +qtl_rss_finemap.rds tolerant 1e-4 1e-8 qtl_rss_fine_mapping -> fine_mapping.R --qtl-sumstats: QtlFineMappingResult from susieR::susie_rss over the same window, --seed 999. Byte-identical across two seeded runs on one machine; the x86/ARM CI matrix may need a looser rtol (in-sample LD from 49 samples is rank-deficient, so the RSS fit is closer to the tolerance edge than the individual-level one). Compared at rtol=1e-4, not 1e-6: the LD is in-sample from 49 samples, so a 200-variant panel has rank <= 48 and the solve sits near-singular, where log-Bayes-factor sums amplify last-bit BLAS differences. Measured macOS-vs-Linux drift 3.5e-6 (logBF) / 5.3e-6 (susieFit lbf_variable) -- bounded rounding, ~20x headroom, still four orders tighter than a real regression (the SuSiE L default change moved this comparison by 0.49 relative). +qtl_rss_twas_weights.rds tolerant 1e-4 1e-8 qtl_rss_twas_weights -> twas_weights.R --qtl-sumstats: TwasWeights from the RSS lasso implementation (lassosumRssWeights) over the same collection, --seed 999. Byte-identical across two seeded runs. Compared at rtol=1e-4, not 1e-6: the LD is in-sample from 49 samples, so a 200-variant panel has rank <= 48 and the solve sits near-singular, where log-Bayes-factor sums amplify last-bit BLAS differences. Measured macOS-vs-Linux drift 3.5e-6 (logBF) / 5.3e-6 (susieFit lbf_variable) -- bounded rounding, ~20x headroom, still four orders tighter than a real regression (the SuSiE L default change moved this comparison by 0.49 relative). diff --git a/tests/fixtures/qtl_rss_analysis/expected/qtl_rss_finemap.rds b/tests/fixtures/qtl_rss_analysis/expected/qtl_rss_finemap.rds new file mode 100644 index 000000000..ffdd821cd Binary files /dev/null and b/tests/fixtures/qtl_rss_analysis/expected/qtl_rss_finemap.rds differ diff --git a/tests/fixtures/qtl_rss_analysis/expected/qtl_rss_twas_weights.rds b/tests/fixtures/qtl_rss_analysis/expected/qtl_rss_twas_weights.rds new file mode 100644 index 000000000..f0655a1bc Binary files /dev/null and b/tests/fixtures/qtl_rss_analysis/expected/qtl_rss_twas_weights.rds differ diff --git a/tests/fixtures/qtl_rss_analysis/expected/qtl_sumstats.rds b/tests/fixtures/qtl_rss_analysis/expected/qtl_sumstats.rds new file mode 100644 index 000000000..b62559d37 Binary files /dev/null and b/tests/fixtures/qtl_rss_analysis/expected/qtl_sumstats.rds differ diff --git a/tests/fixtures/rss_analysis/expected/expected_manifest.tsv b/tests/fixtures/rss_analysis/expected/expected_manifest.tsv index 39f1ebaae..22f2c4217 100644 --- a/tests/fixtures/rss_analysis/expected/expected_manifest.tsv +++ b/tests/fixtures/rss_analysis/expected/expected_manifest.tsv @@ -1,4 +1,4 @@ # expected-output regression manifest — rss_analysis (notebook tier) # columns: output mode rtol atol notes gwas_sumstats.rds tolerant 1e-6 1e-8 generate_gwas_sumstats cell -> gwas_sumstats_construct.R (GwasSumStats for AD_Bellenguez_2022 chr22:49355984-50799822 over the toy chr22 GWAS + ld_reference panel). Deterministic QC/reshaping (no RNG); bit-identical run-to-run. normalize_paths: the ldSketch slot embeds the absolute ld_reference LD-panel path (resolved from --ld-meta at the checkout location), basename-normalized by rds_compare.R. Re-baselined for pecotmr 0.7.8 (#591 class cleanup): the genome build moved off the SumStatsBase `genome` slot into seqinfo(), so this fixture now records genome=GRCh38; values are unchanged (old-vs-new all.equal 1e-6 with the build neutralized). -gwas_finemap.rds tolerant 1e-6 1e-8 gwas_fine_mapping cell -> fine_mapping.R (GwasFineMappingResult, susie). The notebook cell forwards no --seed but susie_rss is deterministic for this fixed input+init: bit-identical across two full pipeline reruns on this machine. Same embedded ld_reference path -> normalize_paths. The x86/ARM CI matrix may need a looser rtol (calibrate from the first CI run), mirroring fine_mapping/expected_manifest.tsv. +gwas_finemap.rds tolerant 1e-6 1e-8 gwas_fine_mapping cell -> fine_mapping.R (GwasFineMappingResult, susie). The notebook cell forwards no --seed but susie_rss is deterministic for this fixed input+init: bit-identical across two full pipeline reruns on this machine. Same embedded ld_reference path -> normalize_paths. The x86/ARM CI matrix may need a looser rtol (calibrate from the first CI run), mirroring fine_mapping/expected_manifest.tsv. Re-baselined for PR #1422 (SuSiE L default 10, greedy-L off): the fit now uses a FIXED 10 single effects where the greedy search previously settled on 5, so alpha goes 5xP -> 10xP and the diffuse PIP mass scales with L. The locus yields no credible sets either way, so no conclusion changes. Greedy-off is what makes this platform-stable: with greedy on the retained count was 5 on macOS and 10 on Linux, a shape difference no tolerance could absorb. diff --git a/tests/fixtures/rss_analysis/expected/gwas_finemap.rds b/tests/fixtures/rss_analysis/expected/gwas_finemap.rds index 8b2ece0ef..66b2926eb 100644 Binary files a/tests/fixtures/rss_analysis/expected/gwas_finemap.rds and b/tests/fixtures/rss_analysis/expected/gwas_finemap.rds differ diff --git a/tests/fixtures/susie_enloc/expected/coloc.rds b/tests/fixtures/susie_enloc/expected/coloc.rds index 13a29535d..88255187a 100644 Binary files a/tests/fixtures/susie_enloc/expected/coloc.rds and b/tests/fixtures/susie_enloc/expected/coloc.rds differ diff --git a/tests/fixtures/susie_enloc/expected_manifest.tsv b/tests/fixtures/susie_enloc/expected_manifest.tsv index a7e85680c..317ff2aaf 100644 --- a/tests/fixtures/susie_enloc/expected_manifest.tsv +++ b/tests/fixtures/susie_enloc/expected_manifest.tsv @@ -1,6 +1,6 @@ # expected-output regression manifest — susie_enloc # columns: output mode rtol atol notes -coloc.rds tolerant 1e-6 1e-8 colocPipeline result data.frame (120 rows, PP.H0..H4) from coloc.R on the committed QTL+GWAS FineMappingResult fixtures; deterministic (no RNG, no embedded paths). +coloc.rds tolerant 1e-6 1e-8 colocPipeline result data.frame (120 rows, PP.H0..H4) from coloc.R on the committed QTL+GWAS FineMappingResult fixtures; deterministic (no RNG, no embedded paths). Re-baselined for pecotmr 0.7.9 (08ab4a23 'make colocPipeline more flexible'): the pair metadata gained gwasContext/gwasTrait (NA for a GWAS side, which has no context or trait axis) and the result now carries the ldSketch through instead of NULL. All 21 pre-existing columns -- PP.H0..H4, hit1/hit2, idx1/idx2, qtl/gwasRetainedMass -- compare identical, so no values changed. colocboost.rds tolerant 1e-6 1e-8 colocboost result list (class colocboost, xqtl_coloc over 2 contexts, --seed 1) from colocboost.R on the qtl_mini QtlDataset; reproducible run-to-run under the seed. colocboost.R zeroes the wall-clock computing_time difftime leaves ONLY when --seed is set, so the run is bit-identical; no embedded paths. colocboost_manifest.tsv tolerant 1e-6 1e-8 colocboost_manifest.R per-gene unit TSV (1 gene, ENSG00000283047, gene-body+/-cis-window ld_block; xQTL-only, no --gwas-meta so GWAS columns empty); deterministic, no embedded paths. enloc_manifest.enrichment.tsv tolerant 1e-6 1e-8 enloc_manifest.R --mode enrichment unit TSV (header + 4 units, one per condition); qtl_files/gwas_files embed the --qtl-path/--gwas-path prefix, so compared with normalize_paths=True. diff --git a/tests/notebooks/mnm_analysis/mnm_methods/test_qtl_rss_analysis.py b/tests/notebooks/mnm_analysis/mnm_methods/test_qtl_rss_analysis.py new file mode 100644 index 000000000..eb75351c6 --- /dev/null +++ b/tests/notebooks/mnm_analysis/mnm_methods/test_qtl_rss_analysis.py @@ -0,0 +1,89 @@ +"""Notebook tier: qtl_rss_analysis.ipynb — RSS fine-mapping and TWAS weights from +cis-QTL summary statistics. + +Drives the whole chain on committed chr22 toy data: the 16-gene TensorQTL nominal +table (tests/fixtures/tensorqtl/expected) restricted to one gene, with the qtl_mini +genotypes doubling as the LD reference panel. That is IN-SAMPLE LD — the same 49 +samples the scan itself used — which is fine for exercising the code path but +optimistic statistically; a real run supplies a separate reference panel. + +The variant ids here are PLINK .bim order (chr:pos:A1:A2), so the notebook is given +`--variant-id-alleles A1A2`. Declaring that wrong does not error: summaryStatsQc +would "correct" the apparent mismatch by sign- and strand-flipping every variant, so +the QC line asserted below (0 flips) is the check that the orientation is right. +""" +from __future__ import annotations + +from helpers.expected import assert_matches_expected + +GENE = "ENSG00000283047" +STUB = f"test_study.context1.{GENE}" +EXP = "tests/fixtures/qtl_rss_analysis/expected" + + +def test_qtl_rss(run_sos, read_rds, repo_root, tmp_path): + cwd = tmp_path / "qtl_rss" + fx = repo_root / "tests" / "fixtures" + p = run_sos( + repo_root / "pipeline/qtl_rss_analysis.ipynb", + "qtl_rss", + { + "cwd": cwd, + "modular_script_dir": repo_root / "code/script", + "sumstats": fx / "tensorqtl/expected/cis_qtl.pairs.tsv.gz", + "ld-sketch": fx / "qtl_mini/protocol_example.genotype.chr22.bed", + "study": "test_study", + "context": "context1", + "trait": GENE, + "variant-id-alleles": "A1A2", # these ids are .bim order + "methods": "susie", + "twas-methods": "lasso", + "seed": 999, + }, + cwd=repo_root, timeout=900) + assert p.returncode == 0, p.stdout + p.stderr + + ss = cwd / f"sumstats/{STUB}.qtl_sumstats.rds" + fm = cwd / f"fine_mapping/{STUB}.qtl_rss_finemap.rds" + tw = cwd / f"twas_weights/{STUB}.qtl_rss_twas_weights.rds" + assert ss.exists() and fm.exists() and tw.exists(), p.stdout + + assert read_rds(ss)["class"] == "QtlSumStats" + info = read_rds(fm) + assert info["class"] == "QtlFineMappingResult" + assert info["MethodNames"] == ["susie"] + assert read_rds(tw)["class"] == "TwasWeights" + + # The gene's cis window is 200 of the table's 22,742 rows: the trait filter ran. + # Zero flips means the declared allele order agrees with the LD panel — if it + # did not, QC would silently flip all 200 and every downstream number would be + # wrong while the run still "succeeded". + out = (cwd / f"sumstats/{STUB}.qtl_sumstats.stdout").read_text() + assert "200 variant(s)" in out, out + qc = (cwd / f"sumstats/{STUB}.qtl_sumstats.stderr").read_text() # message(), not stdout + assert "sign-flip 0, strand-flip 0" in qc, qc + + # regression: all three are deterministic (QC/reshaping has no RNG; the susie_rss + # and lassosum fits are seeded) and byte-identical run-to-run on one machine. + # normalize_paths: the ldSketch embeds the genotype-panel path. + # + # The QtlSumStats is deterministic reshaping + QC with no linear algebra, so it + # holds at rtol=1e-6. The two FITS do not: the LD here is in-sample from 49 + # samples, so a 200-variant panel has rank <= 48 and the solves sit close to + # singular, where log-Bayes-factor sums amplify last-bit BLAS differences. The + # macOS-vs-Linux drift measured on CI is 3.5e-6 (logBF) and 5.3e-6 (susieFit + # lbf_variable) -- bounded rounding, not a behaviour change, so tolerance is the + # right tool (cf. the TensorQTL fixtures, which use rtol=1e-4 for the same + # reason). rtol=1e-4 leaves ~20x headroom over the observed drift while staying + # four orders of magnitude tighter than a real regression: when the SuSiE L + # default changed, the same comparison moved by 0.49 relative. + exp = repo_root / EXP + assert_matches_expected(ss, exp / "qtl_sumstats.rds", mode="tolerant", + rtol=1e-6, atol=1e-8, normalize_paths=True) + assert_matches_expected(fm, exp / "qtl_rss_finemap.rds", mode="tolerant", + rtol=1e-4, atol=1e-8, normalize_paths=True) + # Same LD, same rank deficiency: loosened on the same basis rather than waiting + # for a second CI round to measure it (the fit was never reached on the run that + # surfaced the fine-mapping drift). + assert_matches_expected(tw, exp / "qtl_rss_twas_weights.rds", mode="tolerant", + rtol=1e-4, atol=1e-8, normalize_paths=True) diff --git a/website/_toc.yml b/website/_toc.yml index 2bd8c0f01..e9bf8cfc1 100644 --- a/website/_toc.yml +++ b/website/_toc.yml @@ -83,6 +83,7 @@ parts: - file: summary_stats_finemapping_vignette.ipynb - file: mnm_regression.ipynb - file: rss_analysis.ipynb + - file: qtl_rss_analysis.ipynb - file: mnm_postprocessing.ipynb - caption: GWAS Integration chapters: