From cf938be5c498f7cb47430d1274927a946ec11b99 Mon Sep 17 00:00:00 2001 From: David Gable Date: Mon, 22 Sep 2025 19:45:32 -0700 Subject: [PATCH 1/6] Fixed a bug where log plots were not displayed properly in plotly --- sample_data/models/0/data_product.json | 2 +- sample_data/models/0/results.csv | 86 ++++++++++++----------- sample_data/models/0/stdin.csv | 8 +-- sample_data/models/1/data_product.json | 2 +- sample_data/models/1/results.csv | 91 +++++++++++------------- sample_data/models/1/stdin.csv | 8 +-- sample_data/models/2/data_product.json | 2 +- sample_data/models/2/results.csv | 89 ++++++++++++------------ sample_data/models/2/stdin.csv | 8 +-- sample_data/models/3/data_product.json | 2 +- sample_data/models/3/results.csv | 91 ++++++++++++------------ sample_data/models/3/stdin.csv | 8 +-- sample_data/models/4/data_product.json | 2 +- sample_data/models/4/results.csv | 91 ++++++++++++------------ sample_data/models/4/stdin.csv | 8 +-- sample_data/models/5/data_product.json | 2 +- sample_data/models/5/results.csv | 86 +++++++++++------------ sample_data/models/5/stdin.csv | 8 +-- sample_data/models/6/data_product.json | 2 +- sample_data/models/6/results.csv | 78 ++++++++++----------- sample_data/models/6/stdin.csv | 6 +- sample_data/models/7/data_product.json | 2 +- sample_data/models/7/results.csv | 89 +++++++++++------------- sample_data/models/7/stdin.csv | 8 +-- sample_data/models/8/data_product.json | 2 +- sample_data/models/8/results.csv | 96 +++++++++++++------------- sample_data/models/8/stdin.csv | 8 +-- sample_data/models/9/data_product.json | 2 +- sample_data/models/9/results.csv | 88 ++++++++++++----------- sample_data/models/9/stdin.csv | 8 +-- src/trendify/api/base/pen.py | 4 ++ src/trendify/api/plotting/axline.py | 16 +++++ src/trendify/api/plotting/histogram.py | 8 +++ src/trendify/api/plotting/plotting.py | 29 +++++++- src/trendify/api/plotting/point.py | 1 + src/trendify/api/plotting/trace.py | 1 + src/trendify/examples.py | 11 +++ 37 files 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+0.9777777777777779,-0.15511239043557537,0.09470102083710581,1.0676484952377563 +1.0,0.010934429836450365,-0.004924274225471073,1.0674423380467326 diff --git a/sample_data/models/9/stdin.csv b/sample_data/models/9/stdin.csv index 83c9e52..8eea271 100644 --- a/sample_data/models/9/stdin.csv +++ b/sample_data/models/9/stdin.csv @@ -1,7 +1,7 @@ -n_samples,42.0 +n_samples,46.0 p0,1.0 p1,2.0 p2,3.0 -a0,0.5843619690718755 -a1,0.7172391195551231 -a2,0.5393470044468874 +a0,1.1564496284292365 +a1,0.8806604188996912 +a2,1.1841869824724893 diff --git a/src/trendify/api/base/pen.py b/src/trendify/api/base/pen.py index f45709d..dc44fef 100644 --- a/src/trendify/api/base/pen.py +++ b/src/trendify/api/base/pen.py @@ -87,6 +87,10 @@ def rgba(self) -> str: return f"rgba({r}, {g}, {b}, {a})" + @property + def rgb(self) -> str: + return ", ".join(self.rgba.split(",")[0:-1]) + ")" + def get_contrast_color(self, background_luminance: float = 1.0) -> str: """ Returns 'white' or 'black' to provide the best contrast against the pen's color, diff --git a/src/trendify/api/plotting/axline.py b/src/trendify/api/plotting/axline.py index 83d8c97..fa549de 100644 --- a/src/trendify/api/plotting/axline.py +++ b/src/trendify/api/plotting/axline.py @@ -78,6 +78,14 @@ def add_to_plotly(self, plotly_figure: PlotlyFigure) -> PlotlyFigure: showlegend=False, # Do not show in the legend opacity=self.pen.alpha if self.pen else None, ) + plotly_figure.fig.add_annotation( + x=1.05, + y=self.value, + xref="paper", # Reference to the entire plotting area + text=self.pen.label, + showarrow=False, # Hide the arrow if not needed + yanchor="middle", # Center the text horizontally with the vline + ) case LineOrientation.VERTICAL: plotly_figure.fig.add_vline( x=self.value, @@ -93,6 +101,14 @@ def add_to_plotly(self, plotly_figure: PlotlyFigure) -> PlotlyFigure: showlegend=False, # Do not show in the legend opacity=self.pen.alpha if self.pen else None, ) + plotly_figure.fig.add_annotation( + x=self.value, + y=1.05, # Position slightly above the plot area + yref="paper", # Reference to the entire plotting area + text=self.pen.label, + showarrow=False, # Hide the arrow if not needed + xanchor="center", # Center the text horizontally with the vline + ) case _: logger.error(f"Unrecognized line orientation {self.orientation}") return plotly_figure diff --git a/src/trendify/api/plotting/histogram.py b/src/trendify/api/plotting/histogram.py index b2cc9e8..e2a624d 100644 --- a/src/trendify/api/plotting/histogram.py +++ b/src/trendify/api/plotting/histogram.py @@ -105,6 +105,14 @@ def rgba_edge(self) -> str: return f"rgba({r}, {g}, {b}, {a})" + @property + def rgb_face(self) -> str: + return ", ".join(self.rgba_face.split(",")[0:-1]) + ")" + + @property + def rgb_edge(self) -> str: + return ", ".join(self.rgba_edge.split(",")[0:-1]) + ")" + def get_face_contrast_color(self, background_luminance: float = 1.0) -> str: """ Returns 'white' or 'black' to provide the best contrast against the pen's color, diff --git a/src/trendify/api/plotting/plotting.py b/src/trendify/api/plotting/plotting.py index f6b6985..5239116 100644 --- a/src/trendify/api/plotting/plotting.py +++ b/src/trendify/api/plotting/plotting.py @@ -6,10 +6,11 @@ import warnings import logging +import numpy as np import plotly.graph_objects as go from plotly.subplots import make_subplots -from trendify.api.formats.format2d import PlottableData2D +from trendify.api.formats.format2d import AxisScale, PlottableData2D try: from typing import Self, TYPE_CHECKING @@ -215,15 +216,37 @@ def apply_format(self, format2d: Format2D): layout_updates["yaxis"] = {"title": format2d.label_y} # Set axis ranges + def _log10(v: float | None): + return None if v is None else np.log10(v) + if format2d.lim_x_min is not None or format2d.lim_x_max is not None: if "xaxis" not in layout_updates: layout_updates["xaxis"] = {} - layout_updates["xaxis"]["range"] = [format2d.lim_x_min, format2d.lim_x_max] + + if format2d.scale_x == AxisScale.LOG: + layout_updates["xaxis"]["range"] = [ + _log10(format2d.lim_x_min), + _log10(format2d.lim_x_max), + ] + elif format2d.scale_x == AxisScale.LOG: + layout_updates["xaxis"]["range"] = [ + format2d.lim_x_min, + format2d.lim_x_max, + ] if format2d.lim_y_min is not None or format2d.lim_y_max is not None: if "yaxis" not in layout_updates: layout_updates["yaxis"] = {} - layout_updates["yaxis"]["range"] = [format2d.lim_y_min, format2d.lim_y_max] + if format2d.scale_y == AxisScale.LOG: + layout_updates["yaxis"]["range"] = [ + _log10(format2d.lim_y_min), + _log10(format2d.lim_y_max), + ] + elif format2d.scale_y == AxisScale.LOG: + layout_updates["yaxis"]["range"] = [ + format2d.lim_y_min, + format2d.lim_y_max, + ] # Set axis scales if format2d.scale_x is not None: diff --git a/src/trendify/api/plotting/point.py b/src/trendify/api/plotting/point.py index 325577e..1c50486 100644 --- a/src/trendify/api/plotting/point.py +++ b/src/trendify/api/plotting/point.py @@ -69,6 +69,7 @@ def add_to_plotly(self, plotly_figure: PlotlyFigure) -> PlotlyFigure: size=self.marker.size if self.marker else None, symbol=self.marker.plotly_symbol if self.marker else None, ), + zorder=int(self.marker.zorder) if self.marker else None, legendgroup=legend_key, hovertemplate=hovertemplate, hoverlabel=dict( diff --git a/src/trendify/api/plotting/trace.py b/src/trendify/api/plotting/trace.py index b019187..5b90af3 100644 --- a/src/trendify/api/plotting/trace.py +++ b/src/trendify/api/plotting/trace.py @@ -171,6 +171,7 @@ def add_to_plotly(self, plotly_figure: PlotlyFigure) -> PlotlyFigure: marker=dict( color=self.pen.rgba if self.pen else None, # Marker color ), + zorder=int(self.pen.zorder), hovertemplate=hovertemplate, hoverlabel=dict( bgcolor=(self.pen.rgba if self.pen else None), diff --git a/src/trendify/examples.py b/src/trendify/examples.py index 841eb9f..aa946ae 100644 --- a/src/trendify/examples.py +++ b/src/trendify/examples.py @@ -213,6 +213,7 @@ def example_data_product_generator(workdir: Path) -> trendify.ProductList: color=colors[i], linestyle=linestyles[i % len(linestyles)], alpha=alphas[i], + zorder=2, ), format2d=trendify.Format2D( legend=trendify.Legend( @@ -221,6 +222,8 @@ def example_data_product_generator(workdir: Path) -> trendify.ProductList: edgecolor="red", framealpha=1, ), + lim_y_min=0.1, + lim_y_max=10, grid=trendify.Grid.from_theme(trendify.GridTheme.MATLAB), scale_x=trendify.AxisScale.LOG, scale_y=trendify.AxisScale.LOG, @@ -230,6 +233,14 @@ def example_data_product_generator(workdir: Path) -> trendify.ProductList: .set_metadata({"run_num": run_num}) for i, col in enumerate(df.columns) ] + trendify.AxLine( + tags=["trace_plot_log_xy"], + value=2.5, + orientation=trendify.LineOrientation.HORIZONTAL, + pen=trendify.Pen( + alpha=0.5, color="r", linestyle="-", label="test line", zorder=1 + ), + ).append_to_list(products) traces = [ trendify.Trace2D.from_xy( From b0894a8073862aa0b66e30fc4af17d6e8bd48d35 Mon Sep 17 00:00:00 2001 From: David Gable Date: Mon, 22 Sep 2025 20:29:07 -0700 Subject: [PATCH 2/6] Added zorder to plotly traces, markers, (plotly and matplotlib) histograms style, (matplotlib) legend --- sample_data/models/0/data_product.json | 2 +- sample_data/models/0/results.csv | 89 ++++++++++++----------- sample_data/models/0/stdin.csv | 8 +-- sample_data/models/1/data_product.json | 2 +- sample_data/models/1/results.csv | 86 ++++++++++++----------- sample_data/models/1/stdin.csv | 8 +-- sample_data/models/2/data_product.json | 2 +- sample_data/models/2/results.csv | 89 +++++++++++------------ sample_data/models/2/stdin.csv | 8 +-- sample_data/models/3/data_product.json | 2 +- sample_data/models/3/results.csv | 87 +++++++++++------------ sample_data/models/3/stdin.csv | 8 +-- sample_data/models/4/data_product.json | 2 +- sample_data/models/4/results.csv | 90 ++++++++++++------------ sample_data/models/4/stdin.csv | 8 +-- sample_data/models/5/data_product.json | 2 +- sample_data/models/5/results.csv | 85 +++++++++++----------- sample_data/models/5/stdin.csv | 8 +-- sample_data/models/6/data_product.json | 2 +- sample_data/models/6/results.csv | 89 ++++++++++++----------- sample_data/models/6/stdin.csv | 8 +-- sample_data/models/7/data_product.json | 2 +- sample_data/models/7/results.csv | 88 ++++++++++++----------- sample_data/models/7/stdin.csv | 8 +-- sample_data/models/8/data_product.json | 2 +- sample_data/models/8/results.csv | 97 +++++++++++++------------- sample_data/models/8/stdin.csv | 8 +-- sample_data/models/9/data_product.json | 2 +- sample_data/models/9/results.csv | 89 ++++++++++++----------- sample_data/models/9/stdin.csv | 8 +-- src/trendify/api/plotting/axline.py | 7 +- src/trendify/api/plotting/histogram.py | 3 + src/trendify/api/plotting/plotting.py | 1 + src/trendify/api/styling/legend.py | 1 + src/trendify/examples.py | 18 ++++- 35 files changed, 526 insertions(+), 493 deletions(-) diff --git a/sample_data/models/0/data_product.json b/sample_data/models/0/data_product.json index 0a05885..0246b1f 100644 --- a/sample_data/models/0/data_product.json +++ b/sample_data/models/0/data_product.json @@ -1 +1 @@ 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+0.9761904761904762,-0.18464378356977487,0.017879441469902516,0.6068731331138935 +1.0,-0.033275485364435066,0.02434862403927922,0.6164681836678035 diff --git a/sample_data/models/9/stdin.csv b/sample_data/models/9/stdin.csv index 8eea271..f9146f6 100644 --- a/sample_data/models/9/stdin.csv +++ b/sample_data/models/9/stdin.csv @@ -1,7 +1,7 @@ -n_samples,46.0 +n_samples,43.0 p0,1.0 p1,2.0 p2,3.0 -a0,1.1564496284292365 -a1,0.8806604188996912 -a2,1.1841869824724893 +a0,1.4210834444416918 +a1,1.0393593801609282 +a2,0.7487722155396462 diff --git a/src/trendify/api/plotting/axline.py b/src/trendify/api/plotting/axline.py index fa549de..e2a7429 100644 --- a/src/trendify/api/plotting/axline.py +++ b/src/trendify/api/plotting/axline.py @@ -79,11 +79,13 @@ def add_to_plotly(self, plotly_figure: PlotlyFigure) -> PlotlyFigure: opacity=self.pen.alpha if self.pen else None, ) plotly_figure.fig.add_annotation( - x=1.05, + x=1.0, y=self.value, xref="paper", # Reference to the entire plotting area + yref="y", text=self.pen.label, showarrow=False, # Hide the arrow if not needed + xanchor="left", yanchor="middle", # Center the text horizontally with the vline ) case LineOrientation.VERTICAL: @@ -103,11 +105,12 @@ def add_to_plotly(self, plotly_figure: PlotlyFigure) -> PlotlyFigure: ) plotly_figure.fig.add_annotation( x=self.value, - y=1.05, # Position slightly above the plot area + y=1.0, # Position slightly above the plot area yref="paper", # Reference to the entire plotting area text=self.pen.label, showarrow=False, # Hide the arrow if not needed xanchor="center", # Center the text horizontally with the vline + yanchor="bottom", ) case _: logger.error(f"Unrecognized line orientation {self.orientation}") diff --git a/src/trendify/api/plotting/histogram.py b/src/trendify/api/plotting/histogram.py index e2a624d..ebe39d5 100644 --- a/src/trendify/api/plotting/histogram.py +++ b/src/trendify/api/plotting/histogram.py @@ -37,6 +37,7 @@ class HistogramStyle(HashableBase): alpha_edge: float = 0 alpha_face: float = 0.3 linewidth: float = 2 + zorder: int = 1 bins: int | list[int] | Tuple[int] | NDArray[Shape["*"], int] | None = None def as_plot_kwargs(self): @@ -51,6 +52,7 @@ def as_plot_kwargs(self): "label": self.label, "histtype": self.histtype, "bins": self.bins, + "zorder": self.zorder, } @property @@ -216,6 +218,7 @@ def add_to_plotly(self, plotly_figure: PlotlyFigure): width=self.style.linewidth, ), ), + zorder=self.style.zorder, nbinsx=self.style.bins if isinstance(self.style.bins, int) else None, legendgroup=legend_key, # Group histograms with the same label and color hovertemplate=hovertemplate, diff --git a/src/trendify/api/plotting/plotting.py b/src/trendify/api/plotting/plotting.py index 5239116..d5d59e8 100644 --- a/src/trendify/api/plotting/plotting.py +++ b/src/trendify/api/plotting/plotting.py @@ -97,6 +97,7 @@ def apply_format(self, format2d: Format2D): bbox_to_anchor=format2d.legend.bbox_to_anchor, **kwargs, ) + leg.set_zorder(level=format2d.legend.zorder) if leg is not None and format2d.legend.edgecolor: leg.get_frame().set_edgecolor(format2d.legend.edgecolor) diff --git a/src/trendify/api/styling/legend.py b/src/trendify/api/styling/legend.py index 0aff191..f1b60e4 100644 --- a/src/trendify/api/styling/legend.py +++ b/src/trendify/api/styling/legend.py @@ -74,6 +74,7 @@ class Legend(HashableBase): ncol: int = 1 fancybox: bool = True edgecolor: str = "black" + zorder: int = 10 bbox_to_anchor: tuple[float, float] | None = None def to_kwargs(self): diff --git a/src/trendify/examples.py b/src/trendify/examples.py index aa946ae..c5cfb63 100644 --- a/src/trendify/examples.py +++ b/src/trendify/examples.py @@ -169,12 +169,25 @@ def example_data_product_generator(workdir: Path) -> trendify.ProductList: grid=trendify.Grid.from_theme(trendify.GridTheme.MATLAB), scale_x=trendify.AxisScale.LINEAR, scale_y=trendify.AxisScale.LINEAR, + legend=trendify.Legend(loc=trendify.LegendLocation.LOWER_CENTER), ), ) .append_to_list(products) .set_metadata({"run_num": run_num}) for i, col in enumerate(df.columns) ] + trendify.AxLine( + tags=[("another_xy_plot", "trace_plot")], + value=0.5, + orientation=trendify.LineOrientation.VERTICAL, + pen=trendify.Pen(zorder=11, color="k"), + ).append_to_list(products) + trendify.AxLine( + tags=[("another_xy_plot", "trace_plot")], + value=0.45, + orientation=trendify.LineOrientation.VERTICAL, + pen=trendify.Pen(zorder=9, color="r"), + ).append_to_list(products) traces = [ trendify.Trace2D.from_xy( @@ -211,9 +224,10 @@ def example_data_product_generator(workdir: Path) -> trendify.ProductList: pen=trendify.Pen( label=col, color=colors[i], - linestyle=linestyles[i % len(linestyles)], + linestyle="-", alpha=alphas[i], - zorder=2, + zorder=[1, 1, 2][i], + size=5, ), format2d=trendify.Format2D( legend=trendify.Legend( From f5d9be708dc417ef33696099cc7fc6c811a54cff Mon Sep 17 00:00:00 2001 From: David Gable Date: Mon, 22 Sep 2025 20:33:22 -0700 Subject: [PATCH 3/6] Fixed logo and favicon --- mkdocs.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/mkdocs.yml b/mkdocs.yml index 71915c6..bac9286 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -9,8 +9,8 @@ site_author: Talbot Knighton theme: name: material - logo: assets/logo_white_bg.svg - favicon: assets/logo_white_bg.svg + logo: assets/logo_pink_white_bg.svg + favicon: assets/logo_pink_white_bg.svg features: # - header.autohide - search.suggest From d6960608778ceef49e37dadd993d3a53fb80dfd4 Mon Sep 17 00:00:00 2001 From: David Gable Date: Mon, 22 Sep 2025 20:33:47 -0700 Subject: [PATCH 4/6] Index version --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 513b0bb..c236414 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -23,7 +23,7 @@ dependencies = [ "streamlit", ] name = "trendify" -version = "1.2.6" +version = "1.2.7" requires-python = ">= 3.11" authors = [ { name = "Talbot Knighton", email = "talbotknighton@gmail.com" }, From eeb39a2e5072dce20852388d0eef86950d0d97ac Mon Sep 17 00:00:00 2001 From: Talbot Knighton Date: Tue, 23 Sep 2025 00:59:52 -0700 Subject: [PATCH 5/6] updated publish script --- publish.sh | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/publish.sh b/publish.sh index c91e08f..483dbd7 100755 --- a/publish.sh +++ b/publish.sh @@ -241,7 +241,7 @@ else echo "git pull origin main" echo "git tag -a $VERSION -m \"Release $VERSION\"" echo "git push origin $VERSION" - echo "mike deploy \"$VERSION_NO_V\" --alias latest --update-aliases --push" - echo "mike set-default latest --push" + echo "mike deploy \"$VERSION_NO_V\" latest --update-aliases --push --allow-empty" + echo "mike set-default latest --push --allow-empty" echo "git checkout dev" fi From 2e85c1aefe80cb665adb9c10d842d06e21a02db9 Mon Sep 17 00:00:00 2001 From: Talbot Knighton Date: Tue, 23 Sep 2025 01:06:15 -0700 Subject: [PATCH 6/6] fixed nested quotes in histogram file --- src/trendify/api/plotting/histogram.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/trendify/api/plotting/histogram.py b/src/trendify/api/plotting/histogram.py index ebe39d5..f4e0dbe 100644 --- a/src/trendify/api/plotting/histogram.py +++ b/src/trendify/api/plotting/histogram.py @@ -200,7 +200,7 @@ def add_to_plotly(self, plotly_figure: PlotlyFigure): ) hovertemplate = ( - f"{self.style.label if self.style.label else ""}
" + f"{self.style.label if self.style.label else ''}
" "x: %{x}
" "y: %{y}
" f"{metadata_html}"