In waveform-reference-mapping-3 @p-talapova has been adding waveform concepts for the MIMIC-IV data.
In many cases the new concept does not exist in the Athena or other _delta tables (e.g. WAVEFORM). This is the case for the FAP (Femoral Arterial Pressure) signal for example. For this reason, it would be great to have thewaveform-reference-mapping-3 concepts integrated into released _delta tables.
In some cases a similar concept already appears in other delta tables or even Athena. For example for aVR I see these:
| source table |
concept_id |
concept_name |
domain_id |
vocabulary_id |
concept_class_id |
standard_concept |
concept_code |
valid_start_date |
valid_end_date |
| MIMIC/Ontology/concept_delta |
2061506642 |
aVR |
Measurement |
MIMIC4 |
mimic4wdb |
S |
AVR |
5/7/25 |
12/31/99 |
| WAVEFORM/Ontology/concept_delta |
2082499989 |
aVR |
Waveform Metadata |
WAVEFORM |
WFE Lead |
S |
WF100009 |
12/5/25 |
12/31/99 |
| Athena |
1031335 |
Lead AVR |
Observation |
LOINC |
LOINC System |
|
LP7385-0 |
1/1/70 |
12/31/99 |
| Athena |
37544008 |
LEAD aVR |
Spec Anatomic Site |
CDISC |
Body Structure |
|
C90362 |
|
|
Given this, we may want to perform a harmonization step across libraries prior to integration (at least across the _delta tables, if none of the Athena concepts are standard).
I would assume that if the waveform concept will generally apply across datasets, that we'd lean towards adding the concept to the WAVEFORM _delta table as opposed to the MIMIC _delta table.
In waveform-reference-mapping-3 @p-talapova has been adding waveform concepts for the MIMIC-IV data.
In many cases the new concept does not exist in the Athena or other
_deltatables (e.g.WAVEFORM). This is the case for theFAP(Femoral Arterial Pressure) signal for example. For this reason, it would be great to have thewaveform-reference-mapping-3concepts integrated into released_deltatables.In some cases a similar concept already appears in other delta tables or even Athena. For example for
aVRI see these:Given this, we may want to perform a harmonization step across libraries prior to integration (at least across the
_deltatables, if none of the Athena concepts are standard).I would assume that if the waveform concept will generally apply across datasets, that we'd lean towards adding the concept to the
WAVEFORM_deltatable as opposed to theMIMIC_deltatable.