From 2aedf1f67db0ea36a3be403641912ec9df7839cb Mon Sep 17 00:00:00 2001
From: "github-actions[bot]" <github-actions[bot]@users.noreply.github.com>
Date: Tue, 17 Mar 2026 09:21:21 +0000
Subject: [PATCH] docs: Weekly AI README upgrade (2026-03-17)

---
 README.md | 17 +++++++++++++++++
 1 file changed, 17 insertions(+)

diff --git a/README.md b/README.md
index ab52e09..d5439c4 100644
--- a/README.md
+++ b/README.md
@@ -127,6 +127,23 @@ server <- function(input, output, session) {
 shinyApp(ui, server)
 ```
 
+### Filter Subnetwork by Context
+
+Use `filterSubnetworkByContext` to filter a subnetwork by contextual relevance using PubMed abstracts.
+
+```r
+# Example nodes and edges
+nodes <- data.frame(id = c("A", "B", "C"))
+edges <- data.frame(source = c("A", "B"), target = c("B", "C"), interaction = c("activation", "inhibition"))
+
+# Define query and filter
+query <- c("DNA damage", "repair")
+filtered_subnetwork <- filterSubnetworkByContext(nodes, edges, query = query, method = "tag_count", cutoff = 1)
+
+print(head(filtered_subnetwork$nodes))
+print(head(filtered_subnetwork$edges))
+```
+
 ## License
 This package is distributed under the [Artistic-2.0](https://opensource.org/licenses/Artistic-2.0) license. However, its dependencies may have different licenses.