From 7cc80678ccd02c94ffc08b208a890fd72e095456 Mon Sep 17 00:00:00 2001
From: mjakobs <25904555+mjakobs@users.noreply.github.com>
Date: Mon, 11 Aug 2025 14:25:19 +0100
Subject: [PATCH] Added vignette to readme

---
 README.md | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 7749f18..4756e1f 100644
--- a/README.md
+++ b/README.md
@@ -10,12 +10,13 @@ An R package for plotting phylogenetic trees from Visium 10X spatial transcripto
 <img src="man/SpatialPhyloPlot.png" align="right" width="250" />
 
 - [SpatialPhyloPlot](#spatialphyloplot)
-  - [Citation](#citation)
   - [Introduction](#introduction)
+  - [Citation](#citation)
   - [Installation](#installation)
   - [Example](#example)
     - [Static single sample](#static-single-sample)
     - [Static multi-sample](#static-multi-sample)
+    - [More detailed examples](#more-detailed-examples)
   - [Future Developments](#future-developments)
 
 ## Introduction
@@ -140,5 +141,8 @@ SpatialPhyloPlot(visium_version = "V2",
 
 <img src="man/example_double_sample_one_tree.png" align="center" width="1000" />
 
+### More detailed examples
+For more detailed examples that explore different features and customisations that can be achieved through `SpatialPhyloPlot` please see our [vignette that explores different plotting options](https://github.com/Wedge-lab/SpatialPhyloPlot/blob/main/vignettes/exploring_plotting_options_in_SpatialPhyloPlot.html). 
+
 ## Future Developments
 If you have an idea for a feature that you would like to see implemented in this package please submit a [GitHub issue](https://github.com/Wedge-lab/SpatialPhyloPlot/issues) and we'll see what we can do! :)