Setup File error

[anikimmel]

Hello!

Whenever I try to run your setup file, I come back with this error:

Any ideas on how to resolve it?

Full stack trace:
running bdist_egg
running egg_info
writing mesh_conv3d.egg-info/PKG-INFO
writing dependency_links to mesh_conv3d.egg-info/dependency_links.txt
writing top-level names to mesh_conv3d.egg-info/top_level.txt
reading manifest file 'mesh_conv3d.egg-info/SOURCES.txt'
writing manifest file 'mesh_conv3d.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_ext
Traceback (most recent call last):
File "setup.py", line 7, in
setup(
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/init.py", line 103, in setup
return distutils.core.setup(**attrs)
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/_distutils/core.py", line 185, in setup
return run_commands(dist)
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
dist.run_commands()
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
self.run_command(cmd)
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/dist.py", line 989, in run_command
super().run_command(command)
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/command/install.py", line 84, in run
self.do_egg_install()
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/command/install.py", line 132, in do_egg_install
self.run_command('bdist_egg')
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
self.distribution.run_command(command)
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/dist.py", line 989, in run_command
super().run_command(command)
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/command/bdist_egg.py", line 167, in run
cmd = self.call_command('install_lib', warn_dir=0)
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/command/bdist_egg.py", line 153, in call_command
self.run_command(cmdname)
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
self.distribution.run_command(command)
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/dist.py", line 989, in run_command
super().run_command(command)
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/command/install_lib.py", line 11, in run
self.build()
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/_distutils/command/install_lib.py", line 111, in build
self.run_command('build_ext')
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
self.distribution.run_command(command)
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/dist.py", line 989, in run_command
super().run_command(command)
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/command/build_ext.py", line 88, in run
_build_ext.run(self)
File "/segmesh/.conda/lib/python3.8/site-packages/setuptools/_distutils/command/build_ext.py", line 345, in run
self.build_extensions()
File "/segmesh/.conda/lib/python3.8/site-packages/torch/utils/cpp_extension.py", line 436, in build_extensions
self._check_cuda_version(compiler_name, compiler_version)
File "/segmesh/.conda/lib/python3.8/site-packages/torch/utils/cpp_extension.py", line 813, in _check_cuda_version
torch_cuda_version = packaging.version.parse(torch.version.cuda)
File "/segmesh/.conda/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/version.py", line 52, in parse
return Version(version)
File "/segmesh/.conda/lib/python3.8/site-packages/pkg_resources/_vendor/packaging/version.py", line 196, in init
match = self._regex.search(version)
TypeError: expected string or bytes-like object

[anikimmel]

Actually I fixed this but am getting a series of errors relating to which versions of GCC and G++ and cuda I am using. Is it possible for you to provide a docker file for running the code?

[deval-shah]

Hi @anikimmel Thank you for reporting the issue.

Setup Instructions: https://github.com/aiml-au/segmesh?tab=readme-ov-file#1-setup. I was able to complete the setup without any errors in my machine. The machine configuration I used for setup is as follows.

CPU: 13th Gen Intel(R) Core(TM) i9-13900KF
GPU: A6000
Driver Version: 525.147.05
CUDA Version: 12.0
Pytorch Version: 2.0.1+cu117

Ideally, the cuda version should match the driver version. If possible, can you please share nvidia-smi command output from command line.

1. Would you mind providing screenshots/commands to reproduce this issue?
2. Please share your machine configuration and series of steps that led to other gcc/cuda errors.