Hello, I downloaded the package from github and I am trying it out on one single sample.
This is what my track.df looks like
> track.df
seqnames start end score Type Group
1 chr14 21675306 21689311 0 RGC_rep1 RGC
2 chr14 21689312 21689328 1 RGC_rep1 RGC
3 chr14 21689329 21689667 2 RGC_rep1 RGC
4 chr14 21689668 21689773 1 RGC_rep1 RGC
I use the mark.region from the vignette
mark.region=data.frame(start=112647034,
end=112647834,
label="Focus")
I used this code from the vignette for plotting
basic.coverage = ggcoverage(data = track.df, color = "auto", plot.type = "facet",
mark.region = mark.region, range.position = "out")
which gives this error:
Error in names(x) <- value :
'names' attribute [3] must be the same length as the vector [0]
> traceback()
3: `colnames<-`(`*tmp*`, value = colnames(mark.region))
2: geom_coverage(data = data, mapping = mapping, color = color,
rect.color = rect.color, single.nuc = single.nuc, plot.type = plot.type,
facet.key = facet.key, joint.avg = joint.avg, facet.order = facet.order,
facet.color = facet.color, facet.y.scale = facet.y.scale,
group.key = group.key, range.size = range.size, range.position = range.position,
mark.region = mark.region, mark.color = mark.color, mark.alpha = mark.alpha,
show.mark.label = show.mark.label, mark.label.size = mark.label.size)
1: ggcoverage(data = track.df, color = "auto", plot.type = "facet",
mark.region = mark.region, range.position = "out")
Any pointer as to why this might happen is appreciated! Thanks!
Hello, I downloaded the package from github and I am trying it out on one single sample.
This is what my track.df looks like
I use the mark.region from the vignette
I used this code from the vignette for plotting
which gives this error:
Any pointer as to why this might happen is appreciated! Thanks!