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MikhailArtemyevMikhailArtemyev
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added tests
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‎Makefile‎

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@@ -103,6 +103,10 @@ test-python-sdk: typecheck format prepare-aidbox-runme lint
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. venv/bin/activate && \
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python -m pytest test_sdk.py -v
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py-run:
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$(TYPECHECK) --project examples/python/tsconfig.json
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bun run examples/python/generate.ts
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release:
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echo Push tag for $(VERSION)
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git tag -a v$(VERSION) -m "Release $(VERSION)"

‎src/api/writer-generator/python.ts‎

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@@ -132,7 +132,8 @@ const deriveResourceName = (id: Identifier): string => {
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};
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const resolvePyAssets = (fn: string) => {
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const __dirname = Path.dirname(fileURLToPath(import.meta.url));
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const __filename = fileURLToPath(import.meta.url);
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const __dirname = Path.dirname(__filename);
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if (__filename.endsWith("dist/index.js")) {
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return Path.resolve(__dirname, "..", "assets", "api", "writer-generator", "python", fn);
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} else {

‎test/api/write-generator/multi-package/__snapshots__/ccda.test.ts.snap‎

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// Bun Snapshot v1, https://bun.sh/docs/test/snapshots
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exports[`CCDA Package - Multi-Package Generation TypeScript Generation should generate ClinicalDocument type 1`] = `
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"// WARNING: This file is autogenerated by @atomic-ehr/codegen.
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// GitHub: https://github.com/atomic-ehr/codegen
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// Any manual changes made to this file may be overwritten.
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import type { ANY } from "../hl7-cda-uv-core/Any";
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import type { Authenticator } from "../hl7-cda-uv-core/Authenticator";
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import type { Author } from "../hl7-cda-uv-core/Author";
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import type { Authorization } from "../hl7-cda-uv-core/Authorization";
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import type { CD } from "../hl7-cda-uv-core/Cd";
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import type { CE } from "../hl7-cda-uv-core/Ce";
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import type { Component } from "../hl7-cda-uv-core/Component";
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import type { ComponentOf } from "../hl7-cda-uv-core/ComponentOf";
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import type { CS } from "../hl7-cda-uv-core/Cs";
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import type { Custodian } from "../hl7-cda-uv-core/Custodian";
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import type { DataEnterer } from "../hl7-cda-uv-core/DataEnterer";
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import type { DocumentationOf } from "../hl7-cda-uv-core/DocumentationOf";
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import type { II } from "../hl7-cda-uv-core/Ii";
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import type { Informant } from "../hl7-cda-uv-core/Informant";
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import type { InformationRecipient } from "../hl7-cda-uv-core/InformationRecipient";
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import type { InFulfillmentOf } from "../hl7-cda-uv-core/InFulfillmentOf";
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import type { INT } from "../hl7-cda-uv-core/Int";
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import type { LegalAuthenticator } from "../hl7-cda-uv-core/LegalAuthenticator";
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import type { Participant1 } from "../hl7-cda-uv-core/Participant1";
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import type { RecordTarget } from "../hl7-cda-uv-core/RecordTarget";
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import type { RelatedDocument } from "../hl7-cda-uv-core/RelatedDocument";
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import type { ST } from "../hl7-cda-uv-core/St";
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import type { TS } from "../hl7-cda-uv-core/Ts";
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import type { Element } from "../hl7-fhir-r5-core/Element";
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// CanonicalURL: http://hl7.org/cda/stds/core/StructureDefinition/ClinicalDocument
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export interface ClinicalDocument extends ANY {
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resourceType: "ClinicalDocument";
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authenticator?: Authenticator[];
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author: Author[];
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authorization?: Authorization[];
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classCode?: string;
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_classCode?: Element;
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code: CE;
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component: Component;
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componentOf?: ComponentOf;
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confidentialityCode: CE;
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copyTime?: TS;
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custodian: Custodian;
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dataEnterer?: DataEnterer;
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documentationOf?: DocumentationOf[];
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effectiveTime: TS;
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id: II;
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informant?: Informant[];
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informationRecipient?: InformationRecipient[];
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inFulfillmentOf?: InFulfillmentOf[];
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languageCode?: CS;
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legalAuthenticator?: LegalAuthenticator;
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moodCode?: ("INT" | "APT" | "ARQ" | "PRMS" | "PRP" | "RQO" | "SLOT" | "DEF" | "EVN" | "EVN.CRT" | "GOL" | "OPT" | "PERM" | "PERMRQ");
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_moodCode?: Element;
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participant?: Participant1[];
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realmCode?: CS[];
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recordTarget: RecordTarget[];
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relatedDocument?: RelatedDocument[];
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sdtcCategory?: CD[];
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sdtcStatusCode?: CS;
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setId?: II;
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templateId?: II[];
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title?: ST;
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typeId?: II;
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versionNumber?: INT;
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}
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export const isClinicalDocument = (resource: unknown): resource is ClinicalDocument => {
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return resource !== null && typeof resource === "object" && (resource as {resourceType: string}).resourceType === "ClinicalDocument";
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}
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"
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`;
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exports[`CCDA TypeScript Generation should generate ClinicalDocument type 1`] = `
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"// WARNING: This file is autogenerated by @atomic-ehr/codegen.
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// GitHub: https://github.com/atomic-ehr/codegen
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// Any manual changes made to this file may be overwritten.
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import type { ANY } from "../hl7-cda-uv-core/Any";
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import type { Authenticator } from "../hl7-cda-uv-core/Authenticator";
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import type { Author } from "../hl7-cda-uv-core/Author";
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import type { Authorization } from "../hl7-cda-uv-core/Authorization";
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import type { CD } from "../hl7-cda-uv-core/Cd";
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import type { CE } from "../hl7-cda-uv-core/Ce";
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import type { Component } from "../hl7-cda-uv-core/Component";
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import type { ComponentOf } from "../hl7-cda-uv-core/ComponentOf";
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import type { CS } from "../hl7-cda-uv-core/Cs";
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import type { Custodian } from "../hl7-cda-uv-core/Custodian";
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import type { DataEnterer } from "../hl7-cda-uv-core/DataEnterer";
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import type { DocumentationOf } from "../hl7-cda-uv-core/DocumentationOf";
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import type { II } from "../hl7-cda-uv-core/Ii";
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import type { Informant } from "../hl7-cda-uv-core/Informant";
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import type { InformationRecipient } from "../hl7-cda-uv-core/InformationRecipient";
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import type { InFulfillmentOf } from "../hl7-cda-uv-core/InFulfillmentOf";
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import type { INT } from "../hl7-cda-uv-core/Int";
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import type { LegalAuthenticator } from "../hl7-cda-uv-core/LegalAuthenticator";
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import type { Participant1 } from "../hl7-cda-uv-core/Participant1";
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import type { RecordTarget } from "../hl7-cda-uv-core/RecordTarget";
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import type { RelatedDocument } from "../hl7-cda-uv-core/RelatedDocument";
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import type { ST } from "../hl7-cda-uv-core/St";
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import type { TS } from "../hl7-cda-uv-core/Ts";
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import type { Element } from "../hl7-fhir-r5-core/Element";
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// CanonicalURL: http://hl7.org/cda/stds/core/StructureDefinition/ClinicalDocument
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export interface ClinicalDocument extends ANY {
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resourceType: "ClinicalDocument";
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authenticator?: Authenticator[];
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author: Author[];
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authorization?: Authorization[];
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classCode?: string;
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_classCode?: Element;
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code: CE;
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component: Component;
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componentOf?: ComponentOf;
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confidentialityCode: CE;
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copyTime?: TS;
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custodian: Custodian;
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dataEnterer?: DataEnterer;
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documentationOf?: DocumentationOf[];
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effectiveTime: TS;
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id: II;
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informant?: Informant[];
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informationRecipient?: InformationRecipient[];
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inFulfillmentOf?: InFulfillmentOf[];
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languageCode?: CS;
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legalAuthenticator?: LegalAuthenticator;
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moodCode?: ("INT" | "APT" | "ARQ" | "PRMS" | "PRP" | "RQO" | "SLOT" | "DEF" | "EVN" | "EVN.CRT" | "GOL" | "OPT" | "PERM" | "PERMRQ");
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_moodCode?: Element;
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participant?: Participant1[];
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realmCode?: CS[];
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recordTarget: RecordTarget[];
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relatedDocument?: RelatedDocument[];
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sdtcCategory?: CD[];
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sdtcStatusCode?: CS;
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setId?: II;
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templateId?: II[];
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title?: ST;
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typeId?: II;
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versionNumber?: INT;
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}
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export const isClinicalDocument = (resource: unknown): resource is ClinicalDocument => {
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return resource !== null && typeof resource === "object" && (resource as {resourceType: string}).resourceType === "ClinicalDocument";
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}
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"
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`;

‎test/api/write-generator/multi-package/__snapshots__/local-package.test.ts.snap‎

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// Bun Snapshot v1, https://bun.sh/docs/test/snapshots
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exports[`Local Package Folder - Multi-Package Generation TypeScript Generation should generate ExampleNotebook type 1`] = `
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"// WARNING: This file is autogenerated by @atomic-ehr/codegen.
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// GitHub: https://github.com/atomic-ehr/codegen
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// Any manual changes made to this file may be overwritten.
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import type { Coding } from "../hl7-fhir-r4-core/Coding";
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import type { DomainResource } from "../hl7-fhir-r4-core/DomainResource";
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import type { Identifier } from "../hl7-fhir-r4-core/Identifier";
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import type { Reference } from "../hl7-fhir-r4-core/Reference";
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import type { Element } from "../hl7-fhir-r4-core/Element";
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export type { Coding } from "../hl7-fhir-r4-core/Coding";
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export type { Identifier } from "../hl7-fhir-r4-core/Identifier";
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export type { Reference } from "../hl7-fhir-r4-core/Reference";
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// CanonicalURL: http://example.org/fhir/StructureDefinition/ExampleNotebook
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export interface ExampleNotebook extends DomainResource {
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resourceType: "ExampleNotebook";
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author: Reference<"Patient" | "Practitioner">;
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content: string;
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_content?: Element;
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identifier: Identifier;
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tag?: Coding[];
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title: string;
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_title?: Element;
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}
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export const isExampleNotebook = (resource: unknown): resource is ExampleNotebook => {
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return resource !== null && typeof resource === "object" && (resource as {resourceType: string}).resourceType === "ExampleNotebook";
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}
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"
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`;
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exports[`Local Package Folder - Multi-Package Generation TypeScript Generation should generate ExampleNotebook type in custom package folder 1`] = `
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"// WARNING: This file is autogenerated by @atomic-ehr/codegen.
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// GitHub: https://github.com/atomic-ehr/codegen
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// Any manual changes made to this file may be overwritten.
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import type { Coding } from "../hl7-fhir-r4-core/Coding";
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import type { DomainResource } from "../hl7-fhir-r4-core/DomainResource";
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import type { Identifier } from "../hl7-fhir-r4-core/Identifier";
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import type { Reference } from "../hl7-fhir-r4-core/Reference";
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import type { Element } from "../hl7-fhir-r4-core/Element";
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export type { Coding } from "../hl7-fhir-r4-core/Coding";
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export type { Identifier } from "../hl7-fhir-r4-core/Identifier";
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export type { Reference } from "../hl7-fhir-r4-core/Reference";
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// CanonicalURL: http://example.org/fhir/StructureDefinition/ExampleNotebook
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export interface ExampleNotebook extends DomainResource {
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resourceType: "ExampleNotebook";
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author: Reference<"Patient" | "Practitioner">;
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content: string;
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_content?: Element;
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identifier: Identifier;
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tag?: Coding[];
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title: string;
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_title?: Element;
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}
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export const isExampleNotebook = (resource: unknown): resource is ExampleNotebook => {
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return resource !== null && typeof resource === "object" && (resource as {resourceType: string}).resourceType === "ExampleNotebook";
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}
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"
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`;
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exports[`Local Package Folder - Multi-Package Generation Python Generation should generate base types for dependencies 1`] = `
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"# WARNING: This file is autogenerated by @atomic-ehr/codegen.
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# GitHub: https://github.com/atomic-ehr/codegen
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# Any manual changes made to this file may be overwritten.
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from __future__ import annotations
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from pydantic import BaseModel, ConfigDict, Field, PositiveInt
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from typing import List as PyList, Literal
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from fhir_types.hl7_fhir_r4_core.base import Extension, Narrative
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from fhir_types.hl7_fhir_r4_core.resource import Resource
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from fhir_types.hl7_fhir_r4_core.resource_families import ResourceFamily
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class DomainResource(Resource):
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model_config = ConfigDict(validate_by_name=True, serialize_by_alias=True, extra="forbid")
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resource_type: str = Field(
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default='DomainResource',
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alias='resourceType',
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serialization_alias='resourceType',
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frozen=True,
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pattern='DomainResource'
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)
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contained: PyList[ResourceFamily] | None = Field(None, alias="contained", serialization_alias="contained")
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extension: PyList[Extension] | None = Field(None, alias="extension", serialization_alias="extension")
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modifier_extension: PyList[Extension] | None = Field(None, alias="modifierExtension", serialization_alias="modifierExtension")
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text: Narrative | None = Field(None, alias="text", serialization_alias="text")
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def to_json(self, indent: int | None = None) -> str:
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return self.model_dump_json(exclude_unset=True, exclude_none=True, indent=indent)
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@classmethod
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def from_json(cls, json: str) -> DomainResource:
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return cls.model_validate_json(json)
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"
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`;
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exports[`Local Package Folder - Multi-Package Generation C# Generation should generate DomainResource base class 1`] = `
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"// WARNING: This file is autogenerated by @atomic-ehr/codegen.
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// GitHub: https://github.com/atomic-ehr/codegen
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// Any manual changes made to this file may be overwritten.
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namespace Fhir.Types.Hl7FhirR4Core;
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public class DomainResource : Resource {
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public Resource[]? Contained { get; set; }
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public Extension[]? Extension { get; set; }
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public Extension[]? ModifierExtension { get; set; }
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public Narrative? Text { get; set; }
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public override string ToString() =>
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JsonSerializer.Serialize(this, Helper.JsonSerializerOptions);
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}
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"
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`;

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