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Merge pull request #33 from atomic-ehr/dog-food
Dog food: use generated types for CodeSystem and ValueSet
2 parents cfff12f + f1ba431 commit a4491f8

28 files changed

Lines changed: 550 additions & 98 deletions

‎Makefile‎

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all: test-codegen test-typescript-r4-example test-typescript-ccda-example test-typescript-sql-on-fhir-example lint-unsafe
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generate-types:
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bun run scripts/generate-types.ts
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lint:
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$(LINT)
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‎biome.json‎

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"ignoreUnknown": false,
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"includes": [
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"src/**/*.ts",
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"!src/fhir-types/**/*.ts",
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"test/**/*.ts",
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"scripts/**/*.ts",
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"atomic-codegen.config.js",

‎scripts/generate-types.ts‎

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import { APIBuilder } from "../src/api/builder";
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const builder = new APIBuilder()
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.throwException()
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.fromPackage("hl7.fhir.r4.core", "4.0.1")
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.typescript({
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withDebugComment: false,
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generateProfile: false,
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primitiveTypeExtension: false,
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})
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.outputTo("./src/fhir-types")
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.treeShake({
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"hl7.fhir.r4.core": {
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"http://hl7.org/fhir/StructureDefinition/ValueSet": {},
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"http://hl7.org/fhir/StructureDefinition/CodeSystem": {},
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"http://hl7.org/fhir/StructureDefinition/DomainResource": {
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ignoreFields: ["extension", "modifierExtension"],
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},
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"http://hl7.org/fhir/StructureDefinition/BackboneElement": {
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ignoreFields: ["modifierExtension"],
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},
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"http://hl7.org/fhir/StructureDefinition/Element": {
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ignoreFields: ["extension"],
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},
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},
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})
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.cleanOutput(true);
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const report = await builder.generate();
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if (report.success) {
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console.log("✅ FHIR types generated successfully!");
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} else {
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console.error("❌ FHIR types generation failed.");
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process.exit(1);
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}

‎src/fhir-types/hl7-fhir-r4-core/BackboneElement.ts‎

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// WARNING: This file is autogenerated by @atomic-ehr/codegen.
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// GitHub: https://github.com/atomic-ehr/codegen
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// Any manual changes made to this file may be overwritten.
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import type { Element } from "../hl7-fhir-r4-core/Element";
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export type { Element } from "../hl7-fhir-r4-core/Element";
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// CanonicalURL: http://hl7.org/fhir/StructureDefinition/BackboneElement
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export interface BackboneElement extends Element {
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}

‎src/fhir-types/hl7-fhir-r4-core/CodeSystem.ts‎

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// WARNING: This file is autogenerated by @atomic-ehr/codegen.
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// GitHub: https://github.com/atomic-ehr/codegen
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// Any manual changes made to this file may be overwritten.
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import type { BackboneElement } from "../hl7-fhir-r4-core/BackboneElement";
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import type { CodeableConcept } from "../hl7-fhir-r4-core/CodeableConcept";
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import type { Coding } from "../hl7-fhir-r4-core/Coding";
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import type { ContactDetail } from "../hl7-fhir-r4-core/ContactDetail";
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import type { DomainResource } from "../hl7-fhir-r4-core/DomainResource";
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import type { Identifier } from "../hl7-fhir-r4-core/Identifier";
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import type { UsageContext } from "../hl7-fhir-r4-core/UsageContext";
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export type { BackboneElement } from "../hl7-fhir-r4-core/BackboneElement";
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export type { CodeableConcept } from "../hl7-fhir-r4-core/CodeableConcept";
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export type { Coding } from "../hl7-fhir-r4-core/Coding";
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export type { ContactDetail } from "../hl7-fhir-r4-core/ContactDetail";
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export type { Identifier } from "../hl7-fhir-r4-core/Identifier";
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export type { UsageContext } from "../hl7-fhir-r4-core/UsageContext";
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export interface CodeSystemConcept extends BackboneElement {
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code: string;
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concept?: CodeSystemConcept[];
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definition?: string;
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designation?: CodeSystemConceptDesignation[];
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display?: string;
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property?: CodeSystemConceptProperty[];
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}
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export interface CodeSystemConceptDesignation extends BackboneElement {
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language?: string;
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use?: Coding;
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value: string;
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}
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export interface CodeSystemConceptProperty extends BackboneElement {
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code: string;
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valueBoolean?: boolean;
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valueCode?: string;
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valueCoding?: Coding;
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valueDateTime?: string;
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valueDecimal?: number;
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valueInteger?: number;
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valueString?: string;
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}
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export interface CodeSystemFilter extends BackboneElement {
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code: string;
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description?: string;
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operator: ("=" | "is-a" | "descendent-of" | "is-not-a" | "regex" | "in" | "not-in" | "generalizes" | "exists")[];
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value: string;
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}
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export interface CodeSystemProperty extends BackboneElement {
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code: string;
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description?: string;
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type: ("code" | "Coding" | "string" | "integer" | "boolean" | "dateTime" | "decimal");
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uri?: string;
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}
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// CanonicalURL: http://hl7.org/fhir/StructureDefinition/CodeSystem
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export interface CodeSystem extends DomainResource {
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resourceType: "CodeSystem";
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caseSensitive?: boolean;
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compositional?: boolean;
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concept?: CodeSystemConcept[];
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contact?: ContactDetail[];
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content: ("not-present" | "example" | "fragment" | "complete" | "supplement");
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copyright?: string;
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count?: number;
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date?: string;
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description?: string;
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experimental?: boolean;
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filter?: CodeSystemFilter[];
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hierarchyMeaning?: ("grouped-by" | "is-a" | "part-of" | "classified-with");
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identifier?: Identifier[];
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jurisdiction?: CodeableConcept[];
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name?: string;
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property?: CodeSystemProperty[];
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publisher?: string;
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purpose?: string;
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status: ("draft" | "active" | "retired" | "unknown");
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supplements?: string;
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title?: string;
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url?: string;
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useContext?: UsageContext[];
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valueSet?: string;
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version?: string;
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versionNeeded?: boolean;
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}
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export const isCodeSystem = (resource: unknown): resource is CodeSystem => {
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return resource !== null && typeof resource === "object" && (resource as {resourceType: string}).resourceType === "CodeSystem";
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}

‎src/fhir-types/hl7-fhir-r4-core/CodeableConcept.ts‎

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// WARNING: This file is autogenerated by @atomic-ehr/codegen.
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// GitHub: https://github.com/atomic-ehr/codegen
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// Any manual changes made to this file may be overwritten.
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import type { Coding } from "../hl7-fhir-r4-core/Coding";
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import type { Element } from "../hl7-fhir-r4-core/Element";
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export type { Coding } from "../hl7-fhir-r4-core/Coding";
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export type { Element } from "../hl7-fhir-r4-core/Element";
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// CanonicalURL: http://hl7.org/fhir/StructureDefinition/CodeableConcept
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export interface CodeableConcept extends Element {
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coding?: Coding[];
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text?: string;
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}

‎src/fhir-types/hl7-fhir-r4-core/Coding.ts‎

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// WARNING: This file is autogenerated by @atomic-ehr/codegen.
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// GitHub: https://github.com/atomic-ehr/codegen
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// Any manual changes made to this file may be overwritten.
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import type { Element } from "../hl7-fhir-r4-core/Element";
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export type { Element } from "../hl7-fhir-r4-core/Element";
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// CanonicalURL: http://hl7.org/fhir/StructureDefinition/Coding
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export interface Coding extends Element {
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code?: string;
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display?: string;
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system?: string;
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userSelected?: boolean;
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version?: string;
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}

‎src/fhir-types/hl7-fhir-r4-core/ContactDetail.ts‎

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// WARNING: This file is autogenerated by @atomic-ehr/codegen.
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// GitHub: https://github.com/atomic-ehr/codegen
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// Any manual changes made to this file may be overwritten.
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import type { ContactPoint } from "../hl7-fhir-r4-core/ContactPoint";
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import type { Element } from "../hl7-fhir-r4-core/Element";
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export type { ContactPoint } from "../hl7-fhir-r4-core/ContactPoint";
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export type { Element } from "../hl7-fhir-r4-core/Element";
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// CanonicalURL: http://hl7.org/fhir/StructureDefinition/ContactDetail
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export interface ContactDetail extends Element {
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name?: string;
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telecom?: ContactPoint[];
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}

‎src/fhir-types/hl7-fhir-r4-core/ContactPoint.ts‎

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// WARNING: This file is autogenerated by @atomic-ehr/codegen.
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// GitHub: https://github.com/atomic-ehr/codegen
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// Any manual changes made to this file may be overwritten.
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import type { Element } from "../hl7-fhir-r4-core/Element";
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import type { Period } from "../hl7-fhir-r4-core/Period";
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export type { Element } from "../hl7-fhir-r4-core/Element";
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export type { Period } from "../hl7-fhir-r4-core/Period";
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// CanonicalURL: http://hl7.org/fhir/StructureDefinition/ContactPoint
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export interface ContactPoint extends Element {
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period?: Period;
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rank?: number;
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system?: ("phone" | "fax" | "email" | "pager" | "url" | "sms" | "other");
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use?: ("home" | "work" | "temp" | "old" | "mobile");
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value?: string;
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}

‎src/fhir-types/hl7-fhir-r4-core/DomainResource.ts‎

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// WARNING: This file is autogenerated by @atomic-ehr/codegen.
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// GitHub: https://github.com/atomic-ehr/codegen
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// Any manual changes made to this file may be overwritten.
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import type { Narrative } from "../hl7-fhir-r4-core/Narrative";
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import type { Resource } from "../hl7-fhir-r4-core/Resource";
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export type { Narrative } from "../hl7-fhir-r4-core/Narrative";
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// CanonicalURL: http://hl7.org/fhir/StructureDefinition/DomainResource
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export interface DomainResource extends Resource {
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resourceType: "CodeSystem" | "DomainResource" | "ValueSet";
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contained?: Resource[];
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text?: Narrative;
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}
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export const isDomainResource = (resource: unknown): resource is DomainResource => {
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return resource !== null && typeof resource === "object" && (resource as {resourceType: string}).resourceType === "DomainResource";
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}

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