Rasusa new version has a new command options

[npbhavya]

Trimnami is installing the new version of rasusa, v1.0.0. In the new version, they have changed the parameters so the command line in the trimnami is running into the below error.

Command in trimnami:
rasusa -i sphae.out/PROCESSING/temp/fastp/test_R2.fastq.gz -o sphae.out/PROCESSING/temp/fastp/test_R2.subsampled.fastq.gz -O g --bases 1000M 2> sphae.out/PROCESSING/logs/rasusa_single.fastp.test_R2.log

Error:

error: unexpected argument '-i' found

Usage: rasusa [OPTIONS] <COMMAND>

For more information, try '--help'.

It looks like the command should change to

rasusa reads -o {output} -O g --bases 1000M

[beardymcjohnface]

Ah I see, they've just dropped the -i flag. I'll push a fix ezpz.

[beardymcjohnface]

The new version will be available on PyPI soon if you want to test it? It should get pushed to bioconda hopefully tomorrow.

[npbhavya]

That was quick! Thanks Mike, I will test it once the new version is up

[beardymcjohnface]

I just added you and some other peeps as collaborators in case you ever need to push a fix!