From 36cc70937dbbab97c2086f63c26df5446b6428ff Mon Sep 17 00:00:00 2001 From: llumdi Date: Fri, 19 Jun 2026 15:31:40 +0200 Subject: [PATCH] "harmonized malignant annotation, removed children" --- besca/datasets/nomenclature/CellTypes_v1.tsv | 6 ------ 1 file changed, 6 deletions(-) diff --git a/besca/datasets/nomenclature/CellTypes_v1.tsv b/besca/datasets/nomenclature/CellTypes_v1.tsv index 2ba00c89..44bb2e88 100644 --- a/besca/datasets/nomenclature/CellTypes_v1.tsv +++ b/besca/datasets/nomenclature/CellTypes_v1.tsv @@ -267,7 +267,6 @@ exhausted-like CD4-positive, alpha-beta T cell DB:0000002 ExhCD4Tcell 5 CD4-pos proliferating CD8-positive, alpha-beta T cell DB:0000003 ProlifCD8Tcell 5 CD8-positive, alpha-beta T cell CL:0000625 T cell CL:0000084 lymphocyte CL:0000542 hematopoietic cell CL:0000988 cell CL:0000548 CCR7-positive myeloid dendritic cell DB:0000004 cDC_CCR7 4 myeloid dendritic cell CL:0000782 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 cell CL:0000548 exhausted-like CD8-positive, alpha-beta T cell DB:0000005 ExhCD8Tcell 5 CD8-positive, alpha-beta T cell CL:0000625 T cell CL:0000084 lymphocyte CL:0000542 hematopoietic cell CL:0000988 cell CL:0000548 -melanocytic melanoma cell DB:0000006 MelMelanoma 2 malignant cell CL:0001064 neoplastic cell CL:0001063 IL7R-max CD8-positive, alpha-beta cytotoxic T cell DB:0000007 CD8Tcell_IL7Rmax 5 CD8-positive, alpha-beta T cell CL:0000625 T cell CL:0000084 lymphocyte CL:0000542 hematopoietic cell CL:0000988 cell CL:0000548 IL7R-max CD4-positive, alpha-beta cytotoxic T cell DB:0000040 CD4Tcell_IL7Rmax 5 CD4-positive, alpha-beta T cell CL:0000624 T cell CL:0000084 lymphocyte CL:0000542 hematopoietic cell CL:0000988 cell CL:0000548 doublet DB:0000008 Doublet 1 cell CL:0000548 @@ -316,11 +315,6 @@ IgG plasma cell IgG plasma cell CL:0000985 IgGPlasma 4 plasma cell CL:0000786 IgM or IgA plasma cell DB:0000044 IgMorIgAPlasma 4 plasma cell CL:0000786 lymphocyte of B lineage CL:0000945 hematopoietic cell CL:0000988 cell CL:0000548 IgM plasma cell IgM plasma cell CL:0000986 IgMPlasma 4 plasma cell CL:0000786 lymphocyte of B lineage CL:0000945 hematopoietic cell CL:0000988 cell CL:0000548 naive T cell naive T cell CL:0000898 NaiTcell 4 T cell CL:0000084 lymphocyte CL:0000542 hematopoietic cell CL:0000988 cell CL:0000548 -CMS1 colorectal cancer cell DB:0000045 CMS1Colorectal 3 colorectal cancer cell DB:0000049 malignant cell CL:0001064 neoplastic cell CL:0001063 -CMS2 colorectal cancer cell DB:0000046 CMS2Colorectal 3 colorectal cancer cell DB:0000049 malignant cell CL:0001064 neoplastic cell CL:0001063 -CMS3 colorectal cancer cell DB:0000047 CMS3Colorectal 3 colorectal cancer cell DB:0000049 malignant cell CL:0001064 neoplastic cell CL:0001063 -CMS4 colorectal cancer cell DB:0000048 CMS4Colorectal 3 colorectal cancer cell DB:0000049 malignant cell CL:0001064 neoplastic cell CL:0001063 -colorectal cancer cell DB:0000049 Colorectal 2 malignant cell CL:0001064 neoplastic cell CL:0001063 enteric glial cell DB:0000050 EntericGlial 3 glial cell CL:0000125 neural cell CL:0002319 cell CL:0000548 endothelial cell of lymphatic vessel endothelial cell of lymphatic vessel CL:0002138 EndothelialLymph 3 endothelial cell of vascular tree CL:0002139 endothelial cell CL:0000115 cell CL:0000548 MSR1-positive macrophage DB:0000056 Macrophage_MSR1 4 macrophage CL:0000235 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 cell CL:0000548