Running Error

[guozhizou]

Running src/LDA-RLFM/R/model/examples.R, I got following exception:

(B) Fit a model

dyn.load("c_funcs.so");
source("R/c_funcs.R");
source("R/utils.R");
source("R/model/MCEM_MStep.R");
source("R/model/fit.MCEM.R");

set.seed(2);
ans = fit.MCEM(

• nIter=5,         # Number of EM iterations
  

• nSamples=100,    # Number of samples drawn in each E-step: could be a vector of size nIter.
  

• nBurnIn=10,      # Number of burn-in draws before take samples for the E-step: could be a vector of size nIter.
  

• factor=data.train$factor,   # Initial factor values
  

• obs=data.train$obs,         # Observed rating
  

• feature=data.train$feature, # Feature values
  

• param=data.train$param,     # Initial parameter values
  

• corpus=data.train$corpus,   # The text corpus
  

• try=list(lambda=c(0.5,1,2,4,8), eta=c(0.5, 1, 2, 4)), # Values of lambda and eta that you want to try
  

• out.level=1,                # out.level=1: Save the factor & parameter values to out.dir/est.highestCDL and out.dir/est.last
  

• out.dir="/tmp/test/lda-rlfm", # out.level=2: Save the factor & parameter values of each iteration i to out.dir/est.i
  

• out.append=FALSE,
  

• debug=1,     # Set to 0 to disable internal sanity checking; Set to 100 for most detailed sanity checking
  

• verbose=1,   # Set to 0 to disable console output; Set to 100 to print everything to the console
  

• verbose.M=1, # Verbose setting for the M-step
  

• use.C=TRUE,  # Whether to use the C implementation (R implementation does not have full functionalities)
  

• lm=T         # Whether to use lm to fit linear regression (otherwise bayesglm will be used, which will be slow)
  

• );

WARNING: Some terms do not belong to any items in the corpus.

*** caught segfault ***
address 0x0, cause 'unknown'

Traceback:
1: .C("fillInTopicCounts", output$cnt_item_topic, output$cnt_topic_term, output$cnt_topic, output$z_avg, corpus_topic, corpus$item, corpus$term, corpus$weight, as.integer(nItems), as.integer(nrow(corpus)), as.integer(nTopics), as.integer(nTerms), as.integer(nCorpusWeights), as.integer(debug), DUP = FALSE)
2: getTopicCounts(corpus, factor$corpus_topic, nItems, nTopics, size$nTerms)
3: fit.MCEM(nIter = 5, nSamples = 100, nBurnIn = 10, factor = data.train$factor, obs = data.train$obs, feature = data.train$feature, param = data.train$param, corpus = data.train$corpus, try = list(lambda = c(0.5, 1, 2, 4, 8), eta = c(0.5, 1, 2, 4)), out.level = 1, out.dir = "/tmp/test/lda-rlfm", out.append = FALSE, debug = 1, verbose = 1, verbose.M = 1, use.C = TRUE, lm = T)
An irrecoverable exception occurred. R is aborting now ...

Thanks for any help!

[CodeSense10]

Hello, I am getting the same error. Any help will be deeply appreciated. @beechung Thanks.

[beechung]

I think the problem is because after R 3.x, R no long supports DUP=FALSE. The solution is to change from .C(...) to .Call(...) for the C code in src/LDA-RLFM/C/, in a way similar to the following commit.

1c3e0f5

[narutolhy]

When I use R 3.x, I have also encountered a lot of problems。 And I used R 2.x, those problems disappered

[CodeSense10]

This solved the problem. Thanks a lot @beechung and @narutolhy .

[CodeSense10]

There is another issue. In examples.R, line 267: library(arm) is generating an error-
Error in library(arm) : there is no package called ‘arm’
I have placed the arms.c and arms.h files in arslogistic and yet face this problem. @narutolhy

[beechung]

To install a R package, use the following command:
install.packages("arm")

You need to first install it before you can use it.

[CodeSense10]

@beechung I used R 2.15.3 instead of R 3.x and that solved the initial problem and the subsequent problems that were present despite changing .C(...) to .Call(...). The current problem is that "arm" package is not available for R 2.15.3. Can you suggest a work around?
Also I want to implement fLDA for my own dataset but I could not find reIndexData and indexTestData as mentioned in prediction.R or any explanation about the dataset used in this code.