From ced8939ea5fc70a34a2afbb0457271add5d7455a Mon Sep 17 00:00:00 2001
From: Rebecca Phuonghanh Dang <rdang@berkeley.edu>
Date: Wed, 16 Apr 2025 08:45:43 -0700
Subject: [PATCH 1/6] Update top level page order

---
 acknowledgements.md   | 2 +-
 contact.md            | 2 +-
 contributors.md       | 2 +-
 otter/index.md        | 2 +-
 using-github/index.md | 2 +-
 5 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/acknowledgements.md b/acknowledgements.md
index cbdb650..037864e 100644
--- a/acknowledgements.md
+++ b/acknowledgements.md
@@ -2,7 +2,7 @@
 layout: page
 title: Acknowledgements
 description: acknowledgements and contributors
-nav_order: 6
+nav_order: 7
 ---
 
 # Acknowledgements
diff --git a/contact.md b/contact.md
index 904c1f7..8fdd189 100644
--- a/contact.md
+++ b/contact.md
@@ -2,7 +2,7 @@
 layout: page
 title: Contact
 description: Contact information
-nav_order: 5
+nav_order: 6
 ---
 
 # Contact
diff --git a/contributors.md b/contributors.md
index 8240af9..22125a1 100644
--- a/contributors.md
+++ b/contributors.md
@@ -2,7 +2,7 @@
 layout: page
 title: Contributors
 description: A listing of all contributors to this website
-nav_order: 4
+nav_order: 5
 ---
 
 # Contributors
diff --git a/otter/index.md b/otter/index.md
index 8412280..12ad329 100644
--- a/otter/index.md
+++ b/otter/index.md
@@ -1,7 +1,7 @@
 ---
 layout: page
 title: Otter Grader
-nav_order: 3
+nav_order: 4
 has_toc: true
 has_children: true
 ---
diff --git a/using-github/index.md b/using-github/index.md
index 4f6ca88..37b6164 100644
--- a/using-github/index.md
+++ b/using-github/index.md
@@ -1,7 +1,7 @@
 ---
 layout: page
 title: Using GitHub
-nav_order: 2
+nav_order: 3
 has_children: true
 ---
 

From a1dfe14c5516cbf7c8a83cacf788e9b483f2dac5 Mon Sep 17 00:00:00 2001
From: Rebecca Phuonghanh Dang <rdang@berkeley.edu>
Date: Wed, 16 Apr 2025 08:45:52 -0700
Subject: [PATCH 2/6] Add seamless learning pages

---
 seamless-learning/assignment-snapshots.md | 16 +++++++++++
 seamless-learning/course-websites.md      | 34 +++++++++++++++++++++++
 seamless-learning/curriculum-guide.md     | 15 ++++++++++
 seamless-learning/exam-timer.md           | 15 ++++++++++
 seamless-learning/extensions.md           | 15 ++++++++++
 seamless-learning/index.md                | 20 +++++++++++++
 seamless-learning/seamless-bot.md         | 17 ++++++++++++
 seamless-learning/seating.md              | 16 +++++++++++
 8 files changed, 148 insertions(+)
 create mode 100644 seamless-learning/assignment-snapshots.md
 create mode 100644 seamless-learning/course-websites.md
 create mode 100644 seamless-learning/curriculum-guide.md
 create mode 100644 seamless-learning/exam-timer.md
 create mode 100644 seamless-learning/extensions.md
 create mode 100644 seamless-learning/index.md
 create mode 100644 seamless-learning/seamless-bot.md
 create mode 100644 seamless-learning/seating.md

diff --git a/seamless-learning/assignment-snapshots.md b/seamless-learning/assignment-snapshots.md
new file mode 100644
index 0000000..e24156e
--- /dev/null
+++ b/seamless-learning/assignment-snapshots.md
@@ -0,0 +1,16 @@
+---
+layout: page
+title: Assignment Snapshots
+parent: Seamless Learning
+nav_order: 7
+has_children: false
+---
+
+# Assignment Snapshots
+
+{: .warning }
+This project is currently in development.
+
+Features a script to mass download [OkPy](https://okpy.org) backups and a full-stack web application to view and analyze student backups.
+
+- [GitHub repository](https://github.com/berkeley-cdss/assignment-snapshots)
diff --git a/seamless-learning/course-websites.md b/seamless-learning/course-websites.md
new file mode 100644
index 0000000..126f875
--- /dev/null
+++ b/seamless-learning/course-websites.md
@@ -0,0 +1,34 @@
+---
+layout: page
+title: Course Websites
+parent: Seamless Learning
+nav_order: 3
+has_children: false
+---
+
+# Course Websites
+
+## Berkeley Class Site
+
+The Berkeley Class Site template is a modern, web accessible, Jekyll-based static course website template forked from [Kevin Lin's just-the-class template](https://github.com/kevinlin1/just-the-class), which itself uses the [just-the-docs](https://just-the-docs.com/) theme.
+
+It features all the benefits of Jekyll (fast development, builds, and GitHub Pages deployment) as well as Berkeley-specific
+features such as a web accessibility GitHub Actions workflow and ready-to-use Jekyll collections for announcements,
+lectures, assignments, and staff bios.
+
+- [GitHub repository](https://github.com/berkeley-cdss/berkeley-class-site)
+- [Documentation](https://berkeley-cdss.github.io/berkeley-class-site/docs/)
+- [Live Berkeley Class Site website](https://berkeley-cdss.github.io/berkeley-class-site/)
+
+## Quarto Course Site Template
+
+Statistics courses may prefer a Quarto-based course site template. Seamless Learning maintains two depending on your use case:
+
+- [Quarto Course Site Template](https://github.com/berkeley-cdss/course-site-quarto)
+- [Minimal Quarto Course Site Template](https://github.com/berkeley-cdss/course-site-quarto-lite)
+
+## MyST Course Site Template
+
+Statistics courses may also prefer a MyST-based course site template:
+
+- [GitHub repository](https://github.com/berkeley-cdss/course-site-myst)
diff --git a/seamless-learning/curriculum-guide.md b/seamless-learning/curriculum-guide.md
new file mode 100644
index 0000000..ccef38a
--- /dev/null
+++ b/seamless-learning/curriculum-guide.md
@@ -0,0 +1,15 @@
+---
+layout: page
+title: Data Science Curriculum Guide
+parent: Seamless Learning
+nav_order: 5
+has_children: false
+---
+
+# Data Science Curriculum Guide
+
+Information for instructors who teach or will teach a course using UC Berkeley DataHub
+and students enrolled in courses that use DataHub and want to learn more.
+
+- [GitHub repository](https://github.com/berkeley-cdss/curriculum-guide)
+- [Curriculum Guide website](https://curriculum-guide.datahub.berkeley.edu/)
diff --git a/seamless-learning/exam-timer.md b/seamless-learning/exam-timer.md
new file mode 100644
index 0000000..ac5ac77
--- /dev/null
+++ b/seamless-learning/exam-timer.md
@@ -0,0 +1,15 @@
+---
+layout: page
+title: Exam Timer
+parent: Seamless Learning
+nav_order: 4
+has_children: false
+---
+
+# Exam Timer
+
+The Exam Timer (formerly from CS 61C) allows you to overlay a simple timer on top of a Google Doc, which is useful
+for proctoring exams where you must display clarifications.
+
+- [GitHub repository](https://github.com/berkeley-cdss/exam-timer)
+- [Exam Timer app](https://exam-timer.com/)
\ No newline at end of file
diff --git a/seamless-learning/extensions.md b/seamless-learning/extensions.md
new file mode 100644
index 0000000..0f2f7aa
--- /dev/null
+++ b/seamless-learning/extensions.md
@@ -0,0 +1,15 @@
+---
+layout: page
+title: Extensions
+parent: Seamless Learning
+nav_order: 1
+has_children: false
+---
+
+# Extensions
+
+The extensions tool, sometimes called flextensions or formerly the CS 161 extensions tool, allows
+instructors to review, approve, and implement extensions at scale.
+
+- [GitHub repository](https://github.com/berkeley-cdss/extensions)
+- [Documentation](https://github.com/berkeley-cdss/extensions/wiki)
diff --git a/seamless-learning/index.md b/seamless-learning/index.md
new file mode 100644
index 0000000..4ad7e53
--- /dev/null
+++ b/seamless-learning/index.md
@@ -0,0 +1,20 @@
+---
+layout: page
+title: Seamless Learning
+nav_order: 2
+has_children: true
+---
+
+# Seamless Learning
+
+The [Seamless Learning](https://github.com/berkeley-cdss/seamless-learning) initiative run by [Lisa Yan](https://github.com/yanlisa) (yanlisa@) and [Michael Ball](https://github.com/cycomachead) (ball@) is an essential place for gathering staff, TAs, and faculty to discuss common issues. The documentation here is a direct result of Seamless Learning's efforts.
+
+All Seamless Learning tools are housed under the [berkeley-cdss](https://github.com/berkeley-cdss) GitHub organization.
+Notable Seamless Learning projects are listed below.
+
+You can message any of the contributors on Slack on EECS/DS Crossroads or email us at [{{ site.email }}](mailto:{{ site.email }}).
+
+{: .new-title }
+> Contributions Welcome
+>
+> We are proudly open-source and welcome all contributions. Existing work is the efforts of many past instructors and TAs.
diff --git a/seamless-learning/seamless-bot.md b/seamless-learning/seamless-bot.md
new file mode 100644
index 0000000..c8f49e1
--- /dev/null
+++ b/seamless-learning/seamless-bot.md
@@ -0,0 +1,17 @@
+---
+layout: page
+title: Seamless Bot
+parent: Seamless Learning
+nav_order: 6
+has_children: false
+---
+
+# Seamless Bot
+
+{: .warning }
+This project is currently in development.
+
+Streamline course management by effortlessly accessing summarized student performance reports, assignment progress via Gradescope integration, tracking unresolved threads on Ed, etc. using the Seamless Slackbot.
+
+- [GitHub repository](https://github.com/berkeley-cdss/seamless_bot)
+- [Documentation](https://github.com/berkeley-cdss/seamless_bot/wiki)
diff --git a/seamless-learning/seating.md b/seamless-learning/seating.md
new file mode 100644
index 0000000..72dd6b8
--- /dev/null
+++ b/seamless-learning/seating.md
@@ -0,0 +1,16 @@
+---
+layout: page
+title: Seating
+parent: Seamless Learning
+nav_order: 2
+has_children: false
+---
+
+# Seating
+
+The seating tool (formerly the CS 61A seating tool) allows instructors to have assigned exam seating that matches
+students to a specific seat in a specific building while satisfying their preferences.
+
+- [GitHub repository](https://github.com/berkeley-cdss/seating)
+- [Documentation](https://github.com/berkeley-cdss/seating/wiki)
+- [Seating Tool app](http://seating.eecs.cloud/)

From 35ccbb81599c700736020d95d874b140ea019fde Mon Sep 17 00:00:00 2001
From: Rebecca Phuonghanh Dang <rdang@berkeley.edu>
Date: Wed, 16 Apr 2025 08:52:14 -0700
Subject: [PATCH 3/6] Fix accessibility issue

---
 seamless-learning/index.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/seamless-learning/index.md b/seamless-learning/index.md
index 4ad7e53..dff8f53 100644
--- a/seamless-learning/index.md
+++ b/seamless-learning/index.md
@@ -14,7 +14,7 @@ Notable Seamless Learning projects are listed below.
 
 You can message any of the contributors on Slack on EECS/DS Crossroads or email us at [{{ site.email }}](mailto:{{ site.email }}).
 
-{: .new-title }
+{: .highlight }
 > Contributions Welcome
 >
 > We are proudly open-source and welcome all contributions. Existing work is the efforts of many past instructors and TAs.

From c360b795610fa2995508748b9de8e7add7ba3265 Mon Sep 17 00:00:00 2001
From: Rebecca Phuonghanh Dang <rdang@berkeley.edu>
Date: Mon, 12 May 2025 11:25:07 -0700
Subject: [PATCH 4/6] Move DS curriculum guide to Course Software section, add
 Sections page

---
 course-software/index.md              | 13 +++++++++++++
 seamless-learning/course-websites.md  |  2 +-
 seamless-learning/curriculum-guide.md | 15 ---------------
 seamless-learning/exam-timer.md       |  2 +-
 seamless-learning/sections.md         | 14 ++++++++++++++
 5 files changed, 29 insertions(+), 17 deletions(-)
 create mode 100644 course-software/index.md
 delete mode 100644 seamless-learning/curriculum-guide.md
 create mode 100644 seamless-learning/sections.md

diff --git a/course-software/index.md b/course-software/index.md
new file mode 100644
index 0000000..af23b2a
--- /dev/null
+++ b/course-software/index.md
@@ -0,0 +1,13 @@
+---
+layout: page
+title: Course Software
+nav_order: 4
+has_toc: true
+has_children: false
+---
+
+# Course Software
+
+## Quick Links
+
+- [Data Science Curriculum Guide](https://curriculum-guide.datahub.berkeley.edu/): Information for instructors who teach or will teach a course using UC Berkeley DataHub and students enrolled in courses that use DataHub and want to learn more. ([GitHub](https://github.com/berkeley-cdss/curriculum-guide))
diff --git a/seamless-learning/course-websites.md b/seamless-learning/course-websites.md
index 126f875..461adee 100644
--- a/seamless-learning/course-websites.md
+++ b/seamless-learning/course-websites.md
@@ -2,7 +2,7 @@
 layout: page
 title: Course Websites
 parent: Seamless Learning
-nav_order: 3
+nav_order: 4
 has_children: false
 ---
 
diff --git a/seamless-learning/curriculum-guide.md b/seamless-learning/curriculum-guide.md
deleted file mode 100644
index ccef38a..0000000
--- a/seamless-learning/curriculum-guide.md
+++ /dev/null
@@ -1,15 +0,0 @@
----
-layout: page
-title: Data Science Curriculum Guide
-parent: Seamless Learning
-nav_order: 5
-has_children: false
----
-
-# Data Science Curriculum Guide
-
-Information for instructors who teach or will teach a course using UC Berkeley DataHub
-and students enrolled in courses that use DataHub and want to learn more.
-
-- [GitHub repository](https://github.com/berkeley-cdss/curriculum-guide)
-- [Curriculum Guide website](https://curriculum-guide.datahub.berkeley.edu/)
diff --git a/seamless-learning/exam-timer.md b/seamless-learning/exam-timer.md
index ac5ac77..331ecb7 100644
--- a/seamless-learning/exam-timer.md
+++ b/seamless-learning/exam-timer.md
@@ -2,7 +2,7 @@
 layout: page
 title: Exam Timer
 parent: Seamless Learning
-nav_order: 4
+nav_order: 5
 has_children: false
 ---
 
diff --git a/seamless-learning/sections.md b/seamless-learning/sections.md
new file mode 100644
index 0000000..007e3f6
--- /dev/null
+++ b/seamless-learning/sections.md
@@ -0,0 +1,14 @@
+---
+layout: page
+title: Sections
+parent: Seamless Learning
+nav_order: 3
+has_children: false
+---
+
+# Sections
+
+The sections tool (formerly the CS 61A sections tool) allows instructors to manage discussion, lab, and/or tutoring sections and track attendance.
+
+- [GitHub repository](https://github.com/Cal-CS-61A-Staff/sections)
+- [Sections Tool app (CS 61A instance)](https://sections.cs61a.org/)

From 304cc40259c02f76d11ee2ca2bb7b4ad7daee44e Mon Sep 17 00:00:00 2001
From: Rebecca Phuonghanh Dang <rdang@berkeley.edu>
Date: Mon, 12 May 2025 11:39:41 -0700
Subject: [PATCH 5/6] Bump just-the-docs to v0.10.0 to get unlimited child page
 nesting

- Remove deprecated `has_children` front matter field
- Move Otter section into Course Software section
---
 Gemfile                                                  | 2 +-
 Gemfile.lock                                             | 4 ++--
 course-software/index.md                                 | 3 +--
 {otter => course-software/otter}/gradescope-debug.md     | 6 ++----
 {otter => course-software/otter}/index.md                | 4 ++--
 {otter => course-software/otter}/releasing-assignment.md | 7 +++----
 exams/index.md                                           | 5 ++---
 logistics/index.md                                       | 3 +--
 seamless-learning/assignment-snapshots.md                | 1 -
 seamless-learning/course-websites.md                     | 1 -
 seamless-learning/exam-timer.md                          | 1 -
 seamless-learning/extensions.md                          | 1 -
 seamless-learning/index.md                               | 1 -
 seamless-learning/seamless-bot.md                        | 1 -
 seamless-learning/seating.md                             | 1 -
 seamless-learning/sections.md                            | 1 -
 using-github/index.md                                    | 3 +--
 17 files changed, 15 insertions(+), 30 deletions(-)
 rename {otter => course-software/otter}/gradescope-debug.md (98%)
 rename {otter => course-software/otter}/index.md (93%)
 rename {otter => course-software/otter}/releasing-assignment.md (96%)

diff --git a/Gemfile b/Gemfile
index b22fc38..02c767f 100644
--- a/Gemfile
+++ b/Gemfile
@@ -16,7 +16,7 @@ group :jekyll_plugins do
   gem 'jekyll-redirect-from'
   gem 'jekyll-sitemap'
   gem 'jemoji'
-  gem 'just-the-docs'
+  gem 'just-the-docs', "0.10.0"
 end
 
 # These tools are use for running tests.
diff --git a/Gemfile.lock b/Gemfile.lock
index 30c1d8a..8526cbb 100644
--- a/Gemfile.lock
+++ b/Gemfile.lock
@@ -125,7 +125,7 @@ GEM
       html-pipeline (~> 2.2)
       jekyll (>= 3.0, < 5.0)
     json (2.7.2)
-    just-the-docs (0.9.0)
+    just-the-docs (0.10.0)
       jekyll (>= 3.8.5)
       jekyll-include-cache
       jekyll-seo-tag (>= 2.0)
@@ -266,7 +266,7 @@ DEPENDENCIES
   jekyll-redirect-from
   jekyll-sitemap
   jemoji
-  just-the-docs
+  just-the-docs (= 0.10.0)
   kramdown-parser-gfm
   rack
   rackup
diff --git a/course-software/index.md b/course-software/index.md
index af23b2a..ad57cfc 100644
--- a/course-software/index.md
+++ b/course-software/index.md
@@ -1,9 +1,8 @@
 ---
 layout: page
 title: Course Software
-nav_order: 4
+nav_order: 6
 has_toc: true
-has_children: false
 ---
 
 # Course Software
diff --git a/otter/gradescope-debug.md b/course-software/otter/gradescope-debug.md
similarity index 98%
rename from otter/gradescope-debug.md
rename to course-software/otter/gradescope-debug.md
index 4838980..40fe1e6 100644
--- a/otter/gradescope-debug.md
+++ b/course-software/otter/gradescope-debug.md
@@ -2,12 +2,11 @@
 layout: page
 title: Gradescope Debugging via SSH
 parent: Otter Grader
-nav_order: 2
 ---
 
 # Otter-Gradescope Debugging
 
-Downloading a student's graded submission concatenates the output from the autograder and a PDF copy of the student's submitted `.ipynb`. This PDF of the `.ipynb` will have the output from public tests run on datahub (or wherever the student completed the assignment); it will not have the output from the autograder running in the grading container. 
+Downloading a student's graded submission concatenates the output from the autograder and a PDF copy of the student's submitted `.ipynb`. This PDF of the `.ipynb` will have the output from public tests run on datahub (or wherever the student completed the assignment); it will not have the output from the autograder running in the grading container.
 
 It is possible that the grading container may have a different environment than datahub (or wherever the student completed the assignment) if `requirements.txt` is out of date. **We do not recommend running student submissions locally,** and it is also possible that the environment is different than whatever you may have locally.
 
@@ -53,5 +52,4 @@ Note: If you open a terminal from JupyterLab you will need to rerun `conda activ
 
 1. Move `executed.ipynb` from the `results` directory into the `submission` directory. This ensures you have access to any associated files and allows otter commands to run without issue.
 
-2. You may need to adjust the kernel to use the virtual environment `otter-env`. 
-
+2. You may need to adjust the kernel to use the virtual environment `otter-env`.
diff --git a/otter/index.md b/course-software/otter/index.md
similarity index 93%
rename from otter/index.md
rename to course-software/otter/index.md
index e7eaea1..ad1e2b9 100644
--- a/otter/index.md
+++ b/course-software/otter/index.md
@@ -1,9 +1,9 @@
 ---
 layout: page
 title: Otter Grader
-nav_order: 5
+nav_order: 1
+parent: Course Software
 has_toc: true
-has_children: true
 ---
 
 # Otter Grader Help
diff --git a/otter/releasing-assignment.md b/course-software/otter/releasing-assignment.md
similarity index 96%
rename from otter/releasing-assignment.md
rename to course-software/otter/releasing-assignment.md
index 53d63a3..78c5267 100644
--- a/otter/releasing-assignment.md
+++ b/course-software/otter/releasing-assignment.md
@@ -2,11 +2,10 @@
 layout: page
 title: Releasing an Assignment
 parent: Otter Grader
-nav_order: 1
 ---
 
 <p class="warning">
-This page is a work in progress. This is only the first draft. 
+This page is a work in progress. This is only the first draft.
 </p>
 
 # Releasing an Assignment using Otter Grader
@@ -18,7 +17,7 @@ Note: If you are working on an assignment that will be released to students on a
 ## Before the start of the semester
 
 1. Review what Python packages your class is using.
-   * If you are not developing or altering assignments, you can use files like `requirements.txt` and look at your `import` statements. 
+   * If you are not developing or altering assignments, you can use files like `requirements.txt` and look at your `import` statements.
    * For a systematic way to gather this information, we'll later provide a notebook that gathers all requirements into a a text file.
 
 2. Check that all Python packages are available on the DataHub offering that your course is using.
@@ -36,7 +35,7 @@ numpy.__version__
 
 We recommend running `otter assign` on DataHub. We do NOT recommend running this command locally. You can clone the development repo in DataHub via the command line/terminal. It is safe to do so; you do not need to worry about students accidentally getting access to solutions.
 
-Ensure that the solution runs on DataHub without issue; i.e. "Run All Cells" on the solution notebook generated from `otter assign`. 
+Ensure that the solution runs on DataHub without issue; i.e. "Run All Cells" on the solution notebook generated from `otter assign`.
 
 Only push to the student facing repository once all changes have been made. You don't want to accidentally break an nbgitpuller link.
 
diff --git a/exams/index.md b/exams/index.md
index 7614c84..951304f 100644
--- a/exams/index.md
+++ b/exams/index.md
@@ -1,12 +1,11 @@
 ---
 layout: page
 title: Exams
-nav_order: 3
-has_children: true
+nav_order: 4
 ---
 
 # Exams
 
 ## Quick Links
 
-- [CS 161 Pedagogy Blog: How to Write Solid Exam Questions](https://pedagogy.cs161.org/2022/02/06/exam-writing-i/) 
\ No newline at end of file
+- [CS 161 Pedagogy Blog: How to Write Solid Exam Questions](https://pedagogy.cs161.org/2022/02/06/exam-writing-i/)
\ No newline at end of file
diff --git a/logistics/index.md b/logistics/index.md
index 8baa7e3..af1ff18 100644
--- a/logistics/index.md
+++ b/logistics/index.md
@@ -1,8 +1,7 @@
 ---
 layout: page
 title: Course Logistics
-nav_order: 2
-has_children: true
+nav_order: 3
 ---
 
 # Course Logistics
diff --git a/seamless-learning/assignment-snapshots.md b/seamless-learning/assignment-snapshots.md
index e24156e..31fbbd5 100644
--- a/seamless-learning/assignment-snapshots.md
+++ b/seamless-learning/assignment-snapshots.md
@@ -3,7 +3,6 @@ layout: page
 title: Assignment Snapshots
 parent: Seamless Learning
 nav_order: 7
-has_children: false
 ---
 
 # Assignment Snapshots
diff --git a/seamless-learning/course-websites.md b/seamless-learning/course-websites.md
index 461adee..cb1cab8 100644
--- a/seamless-learning/course-websites.md
+++ b/seamless-learning/course-websites.md
@@ -3,7 +3,6 @@ layout: page
 title: Course Websites
 parent: Seamless Learning
 nav_order: 4
-has_children: false
 ---
 
 # Course Websites
diff --git a/seamless-learning/exam-timer.md b/seamless-learning/exam-timer.md
index 331ecb7..fd9ee29 100644
--- a/seamless-learning/exam-timer.md
+++ b/seamless-learning/exam-timer.md
@@ -3,7 +3,6 @@ layout: page
 title: Exam Timer
 parent: Seamless Learning
 nav_order: 5
-has_children: false
 ---
 
 # Exam Timer
diff --git a/seamless-learning/extensions.md b/seamless-learning/extensions.md
index 0f2f7aa..b66e46f 100644
--- a/seamless-learning/extensions.md
+++ b/seamless-learning/extensions.md
@@ -3,7 +3,6 @@ layout: page
 title: Extensions
 parent: Seamless Learning
 nav_order: 1
-has_children: false
 ---
 
 # Extensions
diff --git a/seamless-learning/index.md b/seamless-learning/index.md
index dff8f53..7d15759 100644
--- a/seamless-learning/index.md
+++ b/seamless-learning/index.md
@@ -2,7 +2,6 @@
 layout: page
 title: Seamless Learning
 nav_order: 2
-has_children: true
 ---
 
 # Seamless Learning
diff --git a/seamless-learning/seamless-bot.md b/seamless-learning/seamless-bot.md
index c8f49e1..ca0002f 100644
--- a/seamless-learning/seamless-bot.md
+++ b/seamless-learning/seamless-bot.md
@@ -3,7 +3,6 @@ layout: page
 title: Seamless Bot
 parent: Seamless Learning
 nav_order: 6
-has_children: false
 ---
 
 # Seamless Bot
diff --git a/seamless-learning/seating.md b/seamless-learning/seating.md
index 72dd6b8..ae5f4bc 100644
--- a/seamless-learning/seating.md
+++ b/seamless-learning/seating.md
@@ -3,7 +3,6 @@ layout: page
 title: Seating
 parent: Seamless Learning
 nav_order: 2
-has_children: false
 ---
 
 # Seating
diff --git a/seamless-learning/sections.md b/seamless-learning/sections.md
index 007e3f6..4200360 100644
--- a/seamless-learning/sections.md
+++ b/seamless-learning/sections.md
@@ -3,7 +3,6 @@ layout: page
 title: Sections
 parent: Seamless Learning
 nav_order: 3
-has_children: false
 ---
 
 # Sections
diff --git a/using-github/index.md b/using-github/index.md
index 7f11c28..9596618 100644
--- a/using-github/index.md
+++ b/using-github/index.md
@@ -1,8 +1,7 @@
 ---
 layout: page
 title: Using GitHub
-nav_order: 4
-has_children: true
+nav_order: 5
 ---
 
 # Using GitHub

From 4712f418e7079b94c3a35e7c9b27c7e0edd5fc59 Mon Sep 17 00:00:00 2001
From: Silas Santini <70163606+pancakereport@users.noreply.github.com>
Date: Tue, 13 May 2025 14:01:02 -0700
Subject: [PATCH 6/6] fold everything in

---
 {logistics => course-software}/course-site.md            | 9 ++++-----
 ed.md => course-software/ed.md                           | 3 ++-
 course-software/index.md                                 | 2 +-
 course-software/otter/index.md                           | 2 +-
 .../seamless-learning}/assignment-snapshots.md           | 0
 .../seamless-learning}/course-websites.md                | 0
 .../seamless-learning}/exam-timer.md                     | 0
 .../seamless-learning}/extensions.md                     | 0
 .../seamless-learning}/index.md                          | 3 ++-
 .../seamless-learning}/seamless-bot.md                   | 0
 .../seamless-learning}/seating.md                        | 0
 .../seamless-learning}/sections.md                       | 0
 {exams => logistics/exams}/index.md                      | 3 ++-
 {exams => logistics/exams}/writing-exams.md              | 0
 logistics/index.md                                       | 2 +-
 logistics/managing-the-course-email.md                   | 2 +-
 using-github/index.md                                    | 2 +-
 17 files changed, 15 insertions(+), 13 deletions(-)
 rename {logistics => course-software}/course-site.md (62%)
 rename ed.md => course-software/ed.md (99%)
 rename {seamless-learning => course-software/seamless-learning}/assignment-snapshots.md (100%)
 rename {seamless-learning => course-software/seamless-learning}/course-websites.md (100%)
 rename {seamless-learning => course-software/seamless-learning}/exam-timer.md (100%)
 rename {seamless-learning => course-software/seamless-learning}/extensions.md (100%)
 rename {seamless-learning => course-software/seamless-learning}/index.md (96%)
 rename {seamless-learning => course-software/seamless-learning}/seamless-bot.md (100%)
 rename {seamless-learning => course-software/seamless-learning}/seating.md (100%)
 rename {seamless-learning => course-software/seamless-learning}/sections.md (100%)
 rename {exams => logistics/exams}/index.md (82%)
 rename {exams => logistics/exams}/writing-exams.md (100%)

diff --git a/logistics/course-site.md b/course-software/course-site.md
similarity index 62%
rename from logistics/course-site.md
rename to course-software/course-site.md
index de5c75e..585177b 100644
--- a/logistics/course-site.md
+++ b/course-software/course-site.md
@@ -1,16 +1,15 @@
 ---
 layout: page
 title: Course Webpages
-parent: Course Logistics
-nav_order: 2
+parent: Course Software
+nav_order: 3
 ---
 
 # Course Webpages
 
 ## Templates
 
-- [Berkeley Class Site Template with Accessibility Checks](https://github.com/berkeley-cdss/berkeley-class-site)
-- [CS 161 Course Site Template](https://github.com/cs161-staff/course-site-template) 
+In the addition to the [templates maintained by Seamless Learning](../seamless-learning/course-websites), CS 161 also maintains a [Jekyll based template](https://github.com/cs161-staff/course-site-template) 
 
 
 ## Accessibility Resources
@@ -19,4 +18,4 @@ You are responsible for ensuring that your webpage is accessible. This is both t
 
 - [Digital Accessibility Program](https://dap.berkeley.edu/)
 - [WCAG Standards](https://www.w3.org/WAI/standards-guidelines/wcag/)
-- [Color Contrast Checker](https://webaim.org/resources/contrastchecker/)
\ No newline at end of file
+- [Color Contrast Checker](https://webaim.org/resources/contrastchecker/) 
\ No newline at end of file
diff --git a/ed.md b/course-software/ed.md
similarity index 99%
rename from ed.md
rename to course-software/ed.md
index 83f2246..1560301 100644
--- a/ed.md
+++ b/course-software/ed.md
@@ -1,7 +1,8 @@
 ---
 layout: page
 title: EdStem
-nav_order: 5
+parent: Course Software
+nav_order: 4
 published: true
 ---
 
diff --git a/course-software/index.md b/course-software/index.md
index ad57cfc..950fb35 100644
--- a/course-software/index.md
+++ b/course-software/index.md
@@ -1,7 +1,7 @@
 ---
 layout: page
 title: Course Software
-nav_order: 6
+nav_order: 5
 has_toc: true
 ---
 
diff --git a/course-software/otter/index.md b/course-software/otter/index.md
index ad1e2b9..a94c08d 100644
--- a/course-software/otter/index.md
+++ b/course-software/otter/index.md
@@ -1,7 +1,7 @@
 ---
 layout: page
 title: Otter Grader
-nav_order: 1
+nav_order: 2
 parent: Course Software
 has_toc: true
 ---
diff --git a/seamless-learning/assignment-snapshots.md b/course-software/seamless-learning/assignment-snapshots.md
similarity index 100%
rename from seamless-learning/assignment-snapshots.md
rename to course-software/seamless-learning/assignment-snapshots.md
diff --git a/seamless-learning/course-websites.md b/course-software/seamless-learning/course-websites.md
similarity index 100%
rename from seamless-learning/course-websites.md
rename to course-software/seamless-learning/course-websites.md
diff --git a/seamless-learning/exam-timer.md b/course-software/seamless-learning/exam-timer.md
similarity index 100%
rename from seamless-learning/exam-timer.md
rename to course-software/seamless-learning/exam-timer.md
diff --git a/seamless-learning/extensions.md b/course-software/seamless-learning/extensions.md
similarity index 100%
rename from seamless-learning/extensions.md
rename to course-software/seamless-learning/extensions.md
diff --git a/seamless-learning/index.md b/course-software/seamless-learning/index.md
similarity index 96%
rename from seamless-learning/index.md
rename to course-software/seamless-learning/index.md
index 7d15759..728e6ce 100644
--- a/seamless-learning/index.md
+++ b/course-software/seamless-learning/index.md
@@ -1,7 +1,8 @@
 ---
 layout: page
 title: Seamless Learning
-nav_order: 2
+parent: Course Software
+nav_order: 1
 ---
 
 # Seamless Learning
diff --git a/seamless-learning/seamless-bot.md b/course-software/seamless-learning/seamless-bot.md
similarity index 100%
rename from seamless-learning/seamless-bot.md
rename to course-software/seamless-learning/seamless-bot.md
diff --git a/seamless-learning/seating.md b/course-software/seamless-learning/seating.md
similarity index 100%
rename from seamless-learning/seating.md
rename to course-software/seamless-learning/seating.md
diff --git a/seamless-learning/sections.md b/course-software/seamless-learning/sections.md
similarity index 100%
rename from seamless-learning/sections.md
rename to course-software/seamless-learning/sections.md
diff --git a/exams/index.md b/logistics/exams/index.md
similarity index 82%
rename from exams/index.md
rename to logistics/exams/index.md
index 951304f..054dd7e 100644
--- a/exams/index.md
+++ b/logistics/exams/index.md
@@ -1,7 +1,8 @@
 ---
 layout: page
 title: Exams
-nav_order: 4
+nav_order: 1
+parent: Course Logistics
 ---
 
 # Exams
diff --git a/exams/writing-exams.md b/logistics/exams/writing-exams.md
similarity index 100%
rename from exams/writing-exams.md
rename to logistics/exams/writing-exams.md
diff --git a/logistics/index.md b/logistics/index.md
index e645718..20c6d76 100644
--- a/logistics/index.md
+++ b/logistics/index.md
@@ -1,7 +1,7 @@
 ---
 layout: page
 title: Course Logistics
-nav_order: 3
+nav_order: 4
 ---
 
 # Course Logistics
diff --git a/logistics/managing-the-course-email.md b/logistics/managing-the-course-email.md
index f61b0ae..43e7a66 100644
--- a/logistics/managing-the-course-email.md
+++ b/logistics/managing-the-course-email.md
@@ -2,7 +2,7 @@
 layout: page
 title: Managing Course Email
 parent: Course Logistics
-nav_order: 1
+nav_order: 2
 ---
 
 # Managing Course Email
diff --git a/using-github/index.md b/using-github/index.md
index 9596618..d7af7f4 100644
--- a/using-github/index.md
+++ b/using-github/index.md
@@ -1,7 +1,7 @@
 ---
 layout: page
 title: Using GitHub
-nav_order: 5
+nav_order: 3
 ---
 
 # Using GitHub