Hello,
I'm receiving an error when attempting to run on existing Kraken2 reports. My script is below, followed by the error message. Do you have any suggestions?
Thank you!
Christina
snakemake -s Snakefile_downstream_only --configfile /pathtofile/kraken_output.yaml -j1 --use-singularity --cores 8
Pulling singularity image shub://bhattlab/kraken2_classification:kraken2_processing.
WorkflowError:
Failed to pull singularity image from shub://bhattlab/kraken2_classification:kraken2_processing:
FATAL: While pulling shub image: failed to get manifest for: shub://bhattlab/kraken2_classification:kraken2_processing: no response received from singularity hub
Hello,
I'm receiving an error when attempting to run on existing Kraken2 reports. My script is below, followed by the error message. Do you have any suggestions?
Thank you!
Christina
snakemake -s Snakefile_downstream_only --configfile /pathtofile/kraken_output.yaml -j1 --use-singularity --cores 8Pulling singularity image shub://bhattlab/kraken2_classification:kraken2_processing.
WorkflowError:
Failed to pull singularity image from shub://bhattlab/kraken2_classification:kraken2_processing:
FATAL: While pulling shub image: failed to get manifest for: shub://bhattlab/kraken2_classification:kraken2_processing: no response received from singularity hub