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+# BIOP02-140 v1 — 폐 공변량 기준선 · 증분가치 (KRAS/EGFR/histology)
+
+`claim_level: hypothesis_only` · `critic_status: pending` · jamie, 2026-08-20
+방법론 = `COVARIATE_BASELINE_PREREGISTRATION.md`(결과 전 고정, 실행 중 발견한 정정 1건 포함).
+스크립트: `fetch_covariates_lung.py`(공변량 조회) → `audit_covariate_incremental_value.py`(분석).
+전량 CPU, 재학습 없음(기존 임베딩·`mil_cost_results.json` H&E 예측값 재사용).
+
+## v1 범위
+
+티켓 본문의 완화 옵션대로 **폐(LUNG_NSCLC) 한 암종, KRAS·EGFR·histology_lusc 세 엔드포인트**만.
+대장·위·두경부는 후속 카드(BIOP02-139가 HPV/grade_high/ERBB2_amp를 스킵한 것과 같은 판단).
+
+## 공변량
+
+purity(ABSOLUTE, Aran 2015 — 매칭 961/1050) · stage(cBioPortal AJCC, I/II/III/IV, 매칭
+993/1050) · 해부학적 부위(ICD_O_3_SITE lobe, 매칭 996/1050) · cohort(LUAD/LUSC, 기존 라벨,
+histology_lusc 엔드포인트에는 순환논리 방지로 제외). **grade는 실측 커버리지 0/1050으로 확인 후
+제외**(TCGA 폐 임상데이터셋 자체에 없음 — 체리피킹 아님, `fetch_covariates_lung.py` 실행 로그가
+근거). 결측은 전부 own category(대체·보간 없음).
+
+## 방법 정정 1건 (실행 중 발견, 결과 계산 전)
+
+원안은 공변량 모델을 `split.csv` train으로 학습→holdout 평가였는데, H&E 예측값
+(`mil_cost_results.json`의 `patient_proba`)이 **holdout에만 존재**해 결합모델을 이 방식으로
+학습할 수 없음을 `KeyError`로 발견했다(이 시점까지 AUROC 미계산). **holdout 271명 안에서
+5-fold StratifiedKFold(seed=42) out-of-fold**로 방법을 바꿔 재등록 후 실행 — 전체 n·n_pos는
+원안과 동일해 검정력 손실 없음. 상세 = 사전등록 문서 "정정" 절.
+
+## 결과
+
+| 엔드포인트 | n_pos | H&E-only(인용) | 공변량-only | 결합(공변량+H&E) | ΔAUROC (95% CI) | 판정 |
+|---|---|---|---|---|---|---|
+| histology_lusc (양성대조) | 153 | 0.939 | **0.586** (0.516–0.654) | 0.931 (0.895–0.962) | **+0.345** (0.278–0.415) | 🟢 유지 |
+| egfr_activating | 15 | 0.852 | **0.816** (0.700–0.906) | 0.881 (0.766–0.952) | +0.065 (0.006–0.127) | **판정 불가**(n_pos<25) |
+| kras_g12c | 14 | 0.681 | **0.802** (0.738–0.854) | 0.801 (0.739–0.855) | **−0.0004** (−0.009–0.007) | **판정 불가**(n_pos<25) **+ 🔴 공변량-only가 H&E 이상** |
+
+**cohort(LUAD/LUSC) 단일공변량 검증** (티켓 본문 인용 "조직형만으로 예측하면 0.793" 확인):
+kras_g12c 단독 cohort 모델 AUROC **0.7795**(5-fold OOF) — 티켓이 인용한 0.793과 방향·크기가
+일치(정확히 같은 방법으로 낸 숫자가 아니라 소수점은 다르지만, **결론은 재현됨**). egfr_activating
+cohort 단독 = 0.7173.
+
+## 읽기
+
+1. **양성대조 통과** — histology_lusc는 공변량-only가 거의 무작위(0.586)인데 H&E를 더하면
+   즉시 0.931로 뛴다(ΔCI가 0을 크게 벗어남). 파이프라인이 정상 작동하고, 결합모델·부트스트랩
+   설계 자체가 신뢰할 만하다는 증거.
+2. **KRAS는 티켓의 우려보다 더 나쁘다.** 티켓은 "조직형만으로 0.793 vs H&E 0.681"을 반증으로
+   들었는데, **purity·stage·site·cohort를 전부 합친 공변량-only 모델이 0.802**로 H&E(0.681)를
+   더 크게 앞선다. 게다가 H&E를 공변량 위에 얹어도(결합모델 0.801) **사실상 아무것도 더하지
+   않는다**(Δ=-0.0004, CI가 0을 딱 걸치고 거의 대칭). **H&E가 KRAS 상태에 대해 공변량(주로
+   조직형)이 이미 아는 것 이상을 읽는다는 증거가 없다.**
+3. **EGFR은 방향은 비슷하지만 덜 극단적이다.** 공변량-only(0.816)가 H&E-only(0.852)에
+   근접하고, ΔAUROC CI([0.006, 0.127])는 형식상 0을 배제하지만 **n_pos=15로 프로젝트 자체
+   기준(`LAW_HELDOUT_SCOREBOARD.md`, n_pos<25→exploratory)에 못 미쳐 사전등록 규칙대로
+   "판정 불가"로 보고한다.** CI 하한이 0.006으로 0에 거의 붙어 있다는 것 자체가 표본이
+   작다는 신호이지, 신뢰할 만한 양의 증분이라는 신호가 아니다.
+4. **순도 층화(둘 다 층당 n_pos 5~10, 참고용):** egfr는 고순도(0.862)·저순도(0.842) 거의
+   차이 없음. kras는 고순도(0.756)·저순도(0.595, 거의 무작위)로 갈리는데 — **표본이 너무
+   작아 확증할 수 없지만**, 만약 실재한다면 "KRAS의 약한 H&E 신호가 있다면 고순도 샘플에
+   집중돼 있다"는 가설과 방향이 맞는다. 판정에는 쓰지 않음(사전등록 n_pos<5 하한은 안
+   걸렸지만 여전히 매우 작은 표본).
+
+## 결정지도 제안 (독립 리뷰 대기, jamie 임의 반영 아님)
+
+- **kras_g12c: 🔴로 본문 명시 권장.** "H&E가 KRAS 상태를 예측한다"가 아니라 "공변량(조직형
+  주도)이 예측하고 H&E는 그 위에 추가 정보가 없다"로 서술을 바꿔야 함 — 데이터가 이걸
+  지지한다(위 3번).
+- **egfr_activating: 판정 보류, 결정지도 변경 안 함.** 방향은 kras와 같지만(공변량이 대부분
+  설명) 표본이 너무 작아 🟡 강등을 단정할 근거는 아니다. Paper C 본문에 "탐색적, 표본 부족"
+  각주는 필요.
+- **histology_lusc: 변경 없음(원래 양성대조).**
+
+## DoD 체크
+
+- [x] 공변량 기준선 모델 정의·문서화 (결과 보기 전) — `COVARIATE_BASELINE_PREREGISTRATION.md`
+- [x] 엔드포인트별 기준선/H&E/결합 AUROC 표 — 위
+- [x] ΔAUROC + CI (bootstrap) — 위
+- [x] 순도 층화 결과 — 위(표본 작음, 참고용)
+- [x] 결정지도에서 강등할 칸 목록 — kras_g12c(🔴 권고), egfr_activating(보류)
+- [ ] **독립 리뷰: 지용기(braveji)** — 아직
+
+## 스킵/후속
+
+- 폐 이외 4개 암종(대장·위·두경부 + 유방 anchor)은 v1 범위 밖 — 별도 카드로 분리 제안.
+- LUAD-only 부분집합(조직형 혼합효과 배제) 정밀해부는 v1에서 안 함 — egfr/kras 표본이 이미
+  n_pos 14~15인데 LUAD로만 좁히면 더 줄어 무의미할 가능성 높음. 필요하면 후속 요청.
diff --git a/experiments/crosscancer/covariate_baseline/COVARIATE_BASELINE_PREREGISTRATION.md b/experiments/crosscancer/covariate_baseline/COVARIATE_BASELINE_PREREGISTRATION.md
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+# BIOP02-140 공변량 기준선 — 방법론 사전등록 (v1, 폐 한정)
+
+`claim_level: hypothesis_only` · 작성 2026-08-20, jamie · **결과를 보기 전에 고정**(DoD 1번 항목).
+
+## 범위 (v1)
+
+티켓 본문이 명시한 부담 완화 옵션을 사용: **폐(LUNG_NSCLC) 한 개 암종만, KRAS·EGFR·histology 세
+엔드포인트.** 이유는 티켓이 이미 준 것과 같다 — 반증(KRAS 0.681 vs 조직형-only 0.793)이 이미 여기
+있고, 티켓 본문 4번 항목("폐 KRAS/EGFR 정밀 해부")도 폐부터 시작하라고 명시한다. 대장·위·두경부는
+후속 카드로 분리(BIOP02-139가 HPV/grade_high/ERBB2_amp를 스킵한 것과 같은 판단).
+
+## 공변량 정의 (신규 데이터 fetch 필요분만)
+
+| 공변량 | 출처 | 커버리지(폐, n=1051 중) | 처리 |
+|---|---|---|---|
+| 종양순도 | ABSOLUTE purity (Aran et al. 2015, *Nat Commun* 6:8971) — `TCGA_mastercalls.abs_tables_JHU_UCSC.txt`, GDC file id `4f277128-f793-4354-a13d-30cc7fe9f6b5` | 확인 예정(fetch 스크립트가 join 후 보고) | 연속값, StandardScaler. 환자당 첫 매칭 tumor(`-01`) 샘플. 결측 환자는 "missing" 이진 플래그 + 값은 0으로 대체(모델이 결측을 별도로 학습하도록 — 값 추정/보간 안 함) |
+| 조직형(cohort, LUAD/LUSC) | 기존 `patient_labels.csv`의 `cohort` 컬럼(이미 있음, 신규 fetch 아님) | 100% | **egfr_activating·kras_g12c에는 포함.** **histology_lusc에는 제외**(그 자체가 라벨이라 포함하면 순환논리) |
+| stage | cBioPortal `AJCC_PATHOLOGIC_TUMOR_STAGE` (luad/lusc_tcga_pan_can_atlas_2018, PATIENT-level) | 실측: LUAD 512/1026, LUSC 484/969 (약 절반) | `STAGE IA/IB→I`, `IIA/IIB→II`, `IIIA/IIIB→III`, `IV→IV`(하위구분 접미사 제거, 표준 관행). 결측은 own category `"missing"`(대체 없음) — one-hot, `missing` 포함 |
+| 해부학적 부위 | cBioPortal `ICD_O_3_SITE` | 실측: LUAD 514/1026, LUSC 485/969 | ICD-O-3 lobe 코드 그대로 category화(C34.0 주기관지/C34.1 상엽/C34.2 중엽/C34.3 하엽/C34.8 중복/C34.9 NOS). 결측은 own category `"missing"` |
+| grade | cBioPortal `GRADE` | **실측 0/1026, 0/969 — 폐 코호트에 전혀 없음**(TCGA 폐 임상 데이터셋 자체가 등급을 안 매김, 유방과 다른 관행) | **v1에서 제외.** 체리피킹 아님 — 사전 실측으로 커버리지 0% 확인 후 배제(코드로 확인, 근거 = fetch 스크립트 출력 로그). 남는 4종(폐 이외 암종 포함) 카드 후속에서 필요 시 재확인 |
+
+## 기준선 모델
+
+- `sklearn.linear_model.LogisticRegression(max_iter=2000, C=1.0)`, 범주형은 one-hot(결측 포함),
+  연속값(purity)은 `StandardScaler`.
+- **학습**: 기존 `split.csv`의 `train` 환자만. **평가**: 기존 `mil_cost_results.json`의
+  `patient_proba` 키 집합(= site-disjoint holdout, val+test pooled, n=271) — H&E 모델과 정확히
+  같은 평가 대상이라야 비교가 성립한다.
+- 결측으로 인한 환자 제외 없음(missing category가 흡수) — 안 그래도 n_pos 14~15인 표본을 더
+  줄이지 않기 위해서다.
+
+## 증분가치(핵심 지표)
+
+- **결합모델** = 공변량 + H&E 예측확률(`mil_cost_results.json`의 `patient_proba`, 단일 실수
+  피처로 추가) → 같은 LogisticRegression, 같은 train/holdout.
+- **ΔAUROC = AUROC(결합모델, holdout) − AUROC(공변량-only, holdout)**.
+- **CI**: paired bootstrap, n=1000·seed=42(`run_mil_cost.py`의 `bootstrap_auc` 컨벤션과 동일
+  n/seed) — 매 반복에서 **같은 재표집 인덱스**로 두 AUROC를 계산해 차이를 내는 방식(두 모델의
+  공유 표본변동을 상쇄하기 위해 독립 bootstrap이 아니라 paired로 함). `기존 run_mil_cost.py`의
+  `bootstrap_auc()`를 단일 AUROC 계산에 그대로 재사용.
+
+## 순도 층화
+
+- 층화 기준은 **holdout 집합(n=271) 안에서** 계산한 purity 중앙값(**train이 아니라 holdout** —
+  층화의 목적이 holdout 안에서 성능이 갈리는지를 보는 것이므로). 동점은 저순도 쪽으로.
+- 층별로 H&E-only bootstrap AUROC(`run_mil_cost.py` 컨벤션 재사용) 계산.
+- **사전에 박아두는 검정력 하한**: 층별 `n_pos < 5`면 AUROC 점추정을 계산하되 **"검정력 부족,
+  판정 불가"로만 보고**하고 🟢/🟡/🔴 판정에 쓰지 않는다. egfr_activating(n_pos=15)·kras_g12c
+  (n_pos=14)는 전체가 이미 프로젝트 자체 기준(`LAW_HELDOUT_SCOREBOARD.md`, n_pos<25→exploratory)
+  에 못 미치므로, 층화하면 층당 7명 안팎 — **결과가 어떻게 나오든 이 두 엔드포인트의 층화는
+  "판정 불가"로 보고될 가능성이 높다는 걸 미리 밝혀둔다**(사후 정당화 방지, 결과를 보고 이
+  하한을 바꾸지 않는다).
+
+## 판정 규칙 (티켓 본문 그대로, 결과를 보기 전에 재확인)
+
+| 결과 | 결정지도 영향 |
+|---|---|
+| ΔAUROC의 95% CI가 0을 배제 | 🟢 유지 |
+| ΔAUROC의 95% CI가 0을 포함 | 🟡 강등 — "H&E가 예측"이 아니라 "공변량이 예측" |
+| 공변량-only AUROC 점추정이 H&E-only(mil_cost의 `real.auc`) 점추정보다 높음 | 🔴 본문 명시 |
+
+**검정력 부족(층 n_pos<5, 또는 전체 n_pos<25)이면 위 표를 적용하지 않고 "판정 불가"로만 보고**
+— 이건 결과를 보기 전에 정하는 규칙이지, 약한 신호를 가리려는 사후 조치가 아니다.
+
+## 히스토리 검증 대상 (사전등록)
+
+티켓 본문이 인용한 "조직형만으로 예측하면 0.793"은 **아직 코드로 확인된 수치가 아니다**
+(CLAUDE.md 금지사항 — 발표/티켓 텍스트의 숫자를 그대로 근거로 쓰지 않는다). 이 사전등록이 끝난
+직후 첫 번째로 계산할 값 = "cohort(LUAD/LUSC) 단일 공변량 → kras_g12c 예측 AUROC, 위와 동일한
+train/holdout". 이 값이 0.793과 다르게 나와도(더 높든 낮든) **있는 그대로 보고**하고, 티켓 본문
+수정은 별도로 제안한다.
+
+## ⚠️ 정정 (2026-08-20, 실행 중 발견 — 결과를 보기 전) — train/holdout 분리 방법 변경
+
+원안(공변량 모델을 `split.csv`의 train으로 학습, holdout으로 평가)을 실행하다 `mil_cost_results.json`
+의 `patient_proba`가 **holdout(val+test)에 대해서만 저장돼 있고 train 환자에 대한 H&E 예측값은
+존재하지 않는다**(재학습 없이는 만들 수 없음, GPU 필요 — v1 CPU-only 스코프 밖)는 걸
+`KeyError`로 확인했다. **이 시점까지 AUROC·ΔAUROC 어떤 수치도 계산되지 않은 상태**였다 — 약한
+결과를 보고 방법을 바꾼 게 아니라, 방법 자체가 데이터 가용성 때문에 애초에 불가능했다는 걸
+첫 실행에서 잡은 것이다.
+
+**수정된 방법**: 공변량-only 모델과 (공변량+H&E) 결합모델 둘 다 **holdout 271명 안에서
+5-fold StratifiedKFold(seed=42)** 교차검증으로 학습·평가한다(폴드 안에서 공변량 모델을 4/5로
+학습 → 나머지 1/5 예측, 5개 폴드 풀링해 out-of-fold AUROC). H&E 예측값은 이미 고정된 값(재학습
+없이 피처로만 사용)이라 이 설계는 "고정된 블랙박스 점수 위에 공변량이 얼마나 더하는가"를 측정하는
+표준적 방법이고, 전체 n(271)·n_pos(14~15)는 원안과 동일해 검정력 손실이 없다. `train_ids`(원래
+`split.csv`의 train)는 이 비교에서 더 이상 쓰지 않는다. 판정 규칙·순도 층화·검정력 하한은
+변경 없음.
+
+## 재사용
+
+- `run_mil_cost.py`의 `bootstrap_auc()` — 그대로 import.
+- `mil_cost_results.json`의 `patient_proba` — H&E 예측확률 원천, 재계산 안 함.
+- `patient_labels.csv`/`split.csv` — 기존 라벨·split, 변경 없음.
+- 신규: purity/stage/site fetch만 (grade는 위에서 실측 후 배제).
diff --git a/experiments/crosscancer/covariate_baseline/TCGA_mastercalls.abs_tables_JHU_UCSC.txt b/experiments/crosscancer/covariate_baseline/TCGA_mastercalls.abs_tables_JHU_UCSC.txt
new file mode 100644
index 0000000..be28eaa
--- /dev/null
+++ b/experiments/crosscancer/covariate_baseline/TCGA_mastercalls.abs_tables_JHU_UCSC.txt
@@ -0,0 +1,10787 @@
+array	sample	call status	purity	ploidy	Genome doublings	Coverage for 80% power	Cancer DNA fraction	Subclonal genome fraction	solution
+TCGA-OR-A5J1-01	TCGA-OR-A5J1-01A-11D-A29H-01	called	0.9	2.0	0.0	9.0	0.9	0.02	new
+TCGA-OR-A5J2-01	TCGA-OR-A5J2-01A-11D-A29H-01	called	0.89	1.3	0.0	6.0	0.84	0.16	new
+TCGA-OR-A5J3-01	TCGA-OR-A5J3-01A-11D-A29H-01	called	0.93	1.27	0.0	5.0	0.89	0.11	new
+TCGA-OR-A5J4-01	TCGA-OR-A5J4-01A-11D-A29H-01	called	0.87	2.6	1.0	12.0	0.89	0.08	new
+TCGA-OR-A5J5-01	TCGA-OR-A5J5-01A-11D-A29H-01	called	0.93	2.79	1.0	12.0	0.95	0.15	new
+TCGA-OR-A5J6-01	TCGA-OR-A5J6-01A-31D-A29H-01	called	0.69	3.34	1.0	17.0	0.79	0.06	new
+TCGA-OR-A5J7-01	TCGA-OR-A5J7-01A-11D-A29H-01	called	0.84	2.6	1.0	12.0	0.87	0.0	new
+TCGA-OR-A5J8-01	TCGA-OR-A5J8-01A-11D-A29H-01	called	0.76	1.23	0.0	7.0	0.66	0.52	new
+TCGA-OR-A5J9-01	TCGA-OR-A5J9-01A-11D-A29H-01	called	0.84	2.61	1.0	12.0	0.87	0.23	new
+TCGA-OR-A5JA-01	TCGA-OR-A5JA-01A-11D-A29H-01	called	0.75	5.52	2.0	32.0	0.89	0.12	new
+TCGA-OR-A5JB-01	TCGA-OR-A5JB-01A-11D-A29H-01	called	0.75	1.78	0.0	10.0	0.73	0.06	new
+TCGA-OR-A5JC-01	TCGA-OR-A5JC-01A-11D-A29H-01	called	0.75	2.77	1.0	14.0	0.81	0.28	new
+TCGA-OR-A5JD-01	TCGA-OR-A5JD-01A-11D-A29H-01	called	0.7	3.12	1.0	16.0	0.78	0.04	new
+TCGA-OR-A5JE-01	TCGA-OR-A5JE-01A-11D-A29H-01	called	0.72	3.32	1.0	17.0	0.81	0.09	new
+TCGA-OR-A5JF-01	TCGA-OR-A5JF-01A-11D-A29H-01	called	0.87	1.43	0.0	7.0	0.83	0.02	new
+TCGA-OR-A5JG-01	TCGA-OR-A5JG-01A-11D-A29H-01	called	0.76	5.68	2.0	32.0	0.9	0.22	new
+TCGA-OR-A5JH-01	TCGA-OR-A5JH-01A-11D-A309-01	called	0.52	1.56	0.0	14.0	0.46	0.01	new
+TCGA-OR-A5JI-01	TCGA-OR-A5JI-01A-11D-A29H-01	called	0.62	2.98	1.0	17.0	0.71	0.05	new
+TCGA-OR-A5JJ-01	TCGA-OR-A5JJ-01A-11D-A29H-01	called	0.9	1.46	0.0	6.0	0.87	0.03	new
+TCGA-OR-A5JK-01	TCGA-OR-A5JK-01A-11D-A29H-01	called	0.74	1.48	0.0	9.0	0.68	0.05	new
+TCGA-OR-A5JL-01	TCGA-OR-A5JL-01A-11D-A29H-01	called	0.82	1.42	0.0	7.0	0.76	0.03	new
+TCGA-OR-A5JM-01	TCGA-OR-A5JM-01A-11D-A29H-01	called	0.97	3.05	1.0	13.0	0.98	0.0	new
+TCGA-OR-A5JO-01	TCGA-OR-A5JO-01A-11D-A29H-01	called	0.55	2.0	0.0	15.0	0.55	0.0	new
+TCGA-OR-A5JP-01	TCGA-OR-A5JP-01A-11D-A29H-01	called	0.8	3.12	1.0	15.0	0.86	0.26	new
+TCGA-OR-A5JQ-01	TCGA-OR-A5JQ-01A-11D-A29H-01	called	0.77	1.52	0.0	8.0	0.71	0.07	new
+TCGA-OR-A5JR-01	TCGA-OR-A5JR-01A-11D-A29H-01	called	0.88	1.4	0.0	6.0	0.84	0.08	new
+TCGA-OR-A5JS-01	TCGA-OR-A5JS-01A-11D-A29H-01	called	0.85	3.42	1.0	15.0	0.91	0.15	new
+TCGA-OR-A5JT-01	TCGA-OR-A5JT-01A-11D-A29H-01	called	0.88	2.6	1.0	11.0	0.91	0.12	new
+TCGA-OR-A5JU-01	TCGA-OR-A5JU-01A-11D-A309-01	called	0.2	2.05	0.0	55.0	0.2	0.43	new
+TCGA-OR-A5JV-01	TCGA-OR-A5JV-01A-11D-A29H-01	called	0.46	2.79	1.0	21.0	0.55	0.06	new
+TCGA-OR-A5JW-01	TCGA-OR-A5JW-01A-11D-A29H-01	called	0.88	1.6	0.0	7.0	0.86	0.07	new
+TCGA-OR-A5JX-01	TCGA-OR-A5JX-01A-11D-A29H-01	called	0.89	3.12	1.0	14.0	0.93	0.06	new
+TCGA-OR-A5JY-01	TCGA-OR-A5JY-01A-31D-A29H-01	called	0.84	4.05	1.0	18.0	0.91	0.2	new
+TCGA-OR-A5JZ-01	TCGA-OR-A5JZ-01A-11D-A29H-01	called	0.95	1.21	0.0	5.0	0.92	0.02	new
+TCGA-OR-A5K0-01	TCGA-OR-A5K0-01A-11D-A29H-01	called	1.0	1.86	0.0	7.0	1.0	0.02	new
+TCGA-OR-A5K1-01	TCGA-OR-A5K1-01A-11D-A29H-01	called	0.89	1.28	0.0	6.0	0.83	0.02	new
+TCGA-OR-A5K2-01	TCGA-OR-A5K2-01A-11D-A29H-01	called	0.83	2.94	1.0	14.0	0.88	0.08	new
+TCGA-OR-A5K3-01	TCGA-OR-A5K3-01A-11D-A29H-01	called	0.91	1.28	0.0	5.0	0.87	0.0	new
+TCGA-OR-A5K4-01	TCGA-OR-A5K4-01A-11D-A29H-01	called	0.97	1.29	0.0	5.0	0.95	0.0	new
+TCGA-OR-A5K5-01	TCGA-OR-A5K5-01A-11D-A29H-01	called	0.88	3.3	1.0	15.0	0.92	0.01	new
+TCGA-OR-A5K6-01	TCGA-OR-A5K6-01A-11D-A29H-01	called	0.91	1.91	0.0	8.0	0.91	0.02	new
+TCGA-OR-A5K8-01	TCGA-OR-A5K8-01A-11D-A29H-01	called	0.95	1.54	0.0	6.0	0.94	0.12	new
+TCGA-OR-A5K9-01	TCGA-OR-A5K9-01A-11D-A29H-01	called	0.94	2.83	1.0	12.0	0.96	0.13	new
+TCGA-OR-A5KB-01	TCGA-OR-A5KB-01A-11D-A309-01	called	0.59	3.35	1.0	19.0	0.71	0.07	new
+TCGA-OR-A5KO-01	TCGA-OR-A5KO-01A-11D-A29H-01	called	0.96	1.48	0.0	6.0	0.95	0.04	new
+TCGA-OR-A5KP-01	TCGA-OR-A5KP-01A-11D-A309-01	called	0.69	2.96	1.0	16.0	0.76	0.05	new
+TCGA-OR-A5KQ-01	TCGA-OR-A5KQ-01A-11D-A309-01	called	0.8	1.99	0.0	10.0	0.8	0.03	new
+TCGA-OR-A5KS-01	TCGA-OR-A5KS-01A-11D-A309-01	called	0.87	2.54	1.0	11.0	0.9	0.51	new
+TCGA-OR-A5KT-01	TCGA-OR-A5KT-01A-11D-A29H-01	called	0.65	2.02	0.0	13.0	0.65	0.1	new
+TCGA-OR-A5KU-01	TCGA-OR-A5KU-01A-11D-A29H-01	called	0.82	2.71	1.0	13.0	0.86	0.23	new
+TCGA-OR-A5KV-01	TCGA-OR-A5KV-01A-11D-A29H-01	called	0.91	2.0	0.0	9.0	0.91	0.03	new
+TCGA-OR-A5KW-01	TCGA-OR-A5KW-01A-11D-A29H-01	called	0.95	1.4	0.0	5.0	0.94	0.06	new
+TCGA-OR-A5KX-01	TCGA-OR-A5KX-01A-11D-A29H-01	called	0.92	4.2	1.0	18.0	0.96	0.15	new
+TCGA-OR-A5KY-01	TCGA-OR-A5KY-01A-11D-A29H-01	called	0.74	2.46	1.0	13.0	0.78	0.07	new
+TCGA-OR-A5KZ-01	TCGA-OR-A5KZ-01A-11D-A29H-01	called	0.95	2.37	1.0	10.0	0.96	0.26	new
+TCGA-OR-A5L1-01	TCGA-OR-A5L1-01A-11D-A309-01	called	0.82	2.69	1.0	13.0	0.86	0.1	new
+TCGA-OR-A5L2-01	TCGA-OR-A5L2-01A-11D-A309-01	called	0.3	4.78	2.0	51.0	0.51	0.41	new
+TCGA-OR-A5L3-01	TCGA-OR-A5L3-01A-11D-A29H-01	called	0.81	1.96	0.0	10.0	0.81	0.0	new
+TCGA-OR-A5L4-01	TCGA-OR-A5L4-01A-11D-A29H-01	called	0.81	2.62	1.0	12.0	0.85	0.28	new
+TCGA-OR-A5L5-01	TCGA-OR-A5L5-01A-11D-A29H-01	called	0.52	2.41	1.0	17.0	0.57	0.05	new
+TCGA-OR-A5L6-01	TCGA-OR-A5L6-01A-11D-A29H-01	called	0.8	4.0	2.0	19.0	0.89	0.25	new
+TCGA-OR-A5L8-01	TCGA-OR-A5L8-01A-11D-A29H-01	called	0.91	2.6	1.0	11.0	0.93	0.26	new
+TCGA-OR-A5L9-01	TCGA-OR-A5L9-01A-11D-A29H-01	called	0.82	1.22	0.0	6.0	0.73	0.02	new
+TCGA-OR-A5LA-01	TCGA-OR-A5LA-01A-11D-A29H-01	called	0.55	2.72	1.0	18.0	0.62	0.04	new
+TCGA-OR-A5LB-01	TCGA-OR-A5LB-01A-11D-A29H-01	called	0.96	1.44	0.0	6.0	0.94	0.03	new
+TCGA-OR-A5LC-01	TCGA-OR-A5LC-01A-11D-A29H-01	called	0.92	3.3	1.0	14.0	0.95	0.05	new
+TCGA-OR-A5LD-01	TCGA-OR-A5LD-01A-11D-A29H-01	called	0.94	3.26	1.0	14.0	0.96	0.08	new
+TCGA-OR-A5LE-01	TCGA-OR-A5LE-01A-11D-A29H-01	called	0.97	1.89	0.0	8.0	0.97	0.03	new
+TCGA-OR-A5LF-01	TCGA-OR-A5LF-01A-11D-A309-01	called	0.72	2.58	1.0	14.0	0.77	0.0	new
+TCGA-OR-A5LG-01	TCGA-OR-A5LG-01A-11D-A29H-01	called	0.92	1.83	0.0	8.0	0.92	0.07	new
+TCGA-OR-A5LH-01	TCGA-OR-A5LH-01A-11D-A29H-01	called	0.85	1.24	0.0	6.0	0.78	0.0	new
+TCGA-OR-A5LI-01	TCGA-OR-A5LI-01A-11D-A309-01	called	0.9	3.51	1.0	15.0	0.94	0.1	new
+TCGA-OR-A5LJ-01	TCGA-OR-A5LJ-01A-11D-A29H-01	called	0.93	1.4	0.0	6.0	0.9	0.0	new
+TCGA-OR-A5LK-01	TCGA-OR-A5LK-01A-11D-A29H-01	called	0.57	2.8	1.0	18.0	0.65	0.18	new
+TCGA-OR-A5LL-01	TCGA-OR-A5LL-01A-11D-A29H-01	called	0.77	3.73	1.0	18.0	0.86	0.2	new
+TCGA-OR-A5LM-01	TCGA-OR-A5LM-01A-11D-A29H-01	called	0.76	4.73	2.0	25.0	0.88	0.29	new
+TCGA-OR-A5LN-01	TCGA-OR-A5LN-01A-11D-A29H-01	called	0.71	3.07	1.0	16.0	0.79	0.0	new
+TCGA-OR-A5LO-01	TCGA-OR-A5LO-01A-11D-A29H-01	called	0.87	2.65	1.0	12.0	0.9	0.17	new
+TCGA-OR-A5LP-01	TCGA-OR-A5LP-01A-11D-A29H-01	called	0.76	1.25	0.0	7.0	0.66	0.02	new
+TCGA-OR-A5LR-01	TCGA-OR-A5LR-01A-11D-A29H-01	called	0.89	1.22	0.0	5.0	0.83	0.0	new
+TCGA-OR-A5LS-01	TCGA-OR-A5LS-01A-11D-A29H-01	called	0.84	3.04	1.0	14.0	0.89	0.0	new
+TCGA-OR-A5LT-01	TCGA-OR-A5LT-01A-11D-A29H-01	called	0.92	2.83	1.0	12.0	0.95	0.03	new
+TCGA-OU-A5PI-01	TCGA-OU-A5PI-01A-12D-A29H-01	called	0.89	1.54	0.0	7.0	0.86	0.07	new
+TCGA-P6-A5OH-01	TCGA-P6-A5OH-01A-11D-A309-01	called	0.8	3.17	1.0	15.0	0.86	0.22	new
+TCGA-PA-A5YG-01	TCGA-PA-A5YG-01A-11D-A29H-01	called	0.73	1.27	0.0	8.0	0.63	0.01	new
+TCGA-PK-A5H9-01	TCGA-PK-A5H9-01A-11D-A29H-01	called	0.8	2.0	0.0	10.0	0.8	0.01	new
+TCGA-PK-A5HA-01	TCGA-PK-A5HA-01A-11D-A29H-01	called	0.83	1.72	0.0	8.0	0.81	0.09	new
+TCGA-PK-A5HB-01	TCGA-PK-A5HB-01A-11D-A29H-01	called	0.89	1.67	0.0	7.0	0.87	0.0	new
+TCGA-PK-A5HC-01	TCGA-PK-A5HC-01A-11D-A309-01	called	0.59	2.58	1.0	16.0	0.65	0.16	new
+TCGA-2F-A9KO-01	TCGA-2F-A9KO-01A-11D-A38F-01	called	0.36	2.85	1.0	33.0	0.45	0.12	new
+TCGA-2F-A9KP-01	TCGA-2F-A9KP-01A-11D-A38F-01	called	0.64	3.96	1.0	21.0	0.78	0.12	new
+TCGA-2F-A9KQ-01	TCGA-2F-A9KQ-01A-11D-A38F-01	called	0.96	1.91	0.0	8.0	0.95	0.01	new
+TCGA-2F-A9KR-01	TCGA-2F-A9KR-01A-11D-A38F-01	called	0.89	1.74	0.0	8.0	0.87	0.18	new
+TCGA-2F-A9KT-01	TCGA-2F-A9KT-01A-11D-A38F-01	called	0.41	3.62	1.0	33.0	0.56	0.08	new
+TCGA-2F-A9KW-01	TCGA-2F-A9KW-01A-11D-A38F-01	called	0.58	3.56	1.0	21.0	0.71	0.13	new
+TCGA-4Z-AA7M-01	TCGA-4Z-AA7M-01A-11D-A390-01	called	0.6	3.43	1.0	20.0	0.72	0.2	new
+TCGA-4Z-AA7O-01	TCGA-4Z-AA7O-01A-31D-A390-01	called	0.84	1.89	0.0	9.0	0.83	0.01	new
+TCGA-4Z-AA7Q-01	TCGA-4Z-AA7Q-01A-11D-A390-01	called	0.29	2.88	1.0	41.0	0.37	0.24	new
+TCGA-4Z-AA7R-01	TCGA-4Z-AA7R-01A-11D-A390-01	called	0.93	3.14	1.0	13.0	0.95	0.3	new
+TCGA-4Z-AA7S-01	TCGA-4Z-AA7S-01A-11D-A390-01	called	0.87	3.85	1.0	17.0	0.93	0.04	new
+TCGA-4Z-AA7W-01	TCGA-4Z-AA7W-01A-11D-A390-01	called	0.32	2.63	1.0	36.0	0.39	0.15	new
+TCGA-4Z-AA7Y-01	TCGA-4Z-AA7Y-01A-11D-A390-01	called	0.94	2.02	0.0	8.0	0.94	0.02	new
+TCGA-4Z-AA80-01	TCGA-4Z-AA80-01A-11D-A390-01	called	0.47	4.8	2.0	37.0	0.68	0.41	new
+TCGA-4Z-AA81-01	TCGA-4Z-AA81-01A-11D-A390-01	called	0.55	3.47	1.0	21.0	0.68	0.21	new
+TCGA-4Z-AA82-01	TCGA-4Z-AA82-01A-11D-A390-01	called	0.58	3.88	1.0	25.0	0.73	0.1	new
+TCGA-4Z-AA83-01	TCGA-4Z-AA83-01A-11D-A390-01	called	0.84	1.97	0.0	9.0	0.83	0.01	new
+TCGA-4Z-AA84-01	TCGA-4Z-AA84-01A-11D-A390-01	called	0.43	4.72	2.0	39.0	0.64	0.27	new
+TCGA-4Z-AA86-01	TCGA-4Z-AA86-01A-11D-A390-01	called	0.28	2.98	1.0	43.0	0.37	0.22	new
+TCGA-4Z-AA87-01	TCGA-4Z-AA87-01A-11D-A390-01	called	0.61	3.58	1.0	20.0	0.74	0.17	new
+TCGA-4Z-AA89-01	TCGA-4Z-AA89-01A-11D-A390-01	called	0.87	1.99	0.0	9.0	0.87	0.31	new
+TCGA-5N-A9KI-01	TCGA-5N-A9KI-01A-31D-A42D-01	called	0.58	3.55	1.0	21.0	0.71	0.25	new
+TCGA-5N-A9KM-01	TCGA-5N-A9KM-01A-11D-A42D-01	called	0.72	1.98	0.0	11.0	0.71	0.11	new
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+TCGA-E2-A1LK-01	TCGA-E2-A1LK-01A-21D-A14F-01	called	0.67	4.06	1.0	21.0	0.8	0.53	new
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+TCGA-E2-A2P5-01	TCGA-E2-A2P5-01A-11D-A19X-01	called	0.6	3.17	1.0	19.0	0.7	0.07	new
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+TCGA-E2-A9RU-01	TCGA-E2-A9RU-01A-11D-A41E-01	called	0.54	5.61	2.0	39.0	0.76	0.27	new
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+TCGA-E9-A1N4-01	TCGA-E9-A1N4-01A-11D-A14J-01	called	0.64	1.8	0.0	12.0	0.62	0.0	new
+TCGA-E9-A1N5-01	TCGA-E9-A1N5-01A-11D-A14F-01	called	0.66	1.95	0.0	12.0	0.65	0.17	new
+TCGA-E9-A1N8-01	TCGA-E9-A1N8-01A-11D-A141-01	called	0.95	1.81	0.0	7.0	0.94	0.19	new
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+TCGA-CQ-5330-01	TCGA-CQ-5330-01A-01D-1682-01	called	0.53	2.15	0.0	16.0	0.55	0.3	new
+TCGA-CQ-5331-01	TCGA-CQ-5331-01A-02D-1869-01	called	0.27	2.06	0.0	39.0	0.28	0.0	new
+TCGA-CQ-5332-01	TCGA-CQ-5332-01A-01D-1682-01	called	0.64	3.61	1.0	20.0	0.76	0.22	new
+TCGA-CQ-5333-01	TCGA-CQ-5333-01A-01D-2390-01	called	0.29	2.06	0.0	36.0	0.3	0.06	new
+TCGA-CQ-5334-01	TCGA-CQ-5334-01A-01D-1682-01	called	0.41	2.15	0.0	21.0	0.43	0.14	new
+TCGA-CQ-6218-01	TCGA-CQ-6218-01A-11D-1910-01	called	0.49	1.95	0.0	17.0	0.48	0.03	new
+TCGA-CQ-6220-01	TCGA-CQ-6220-01A-11D-1910-01	called	0.39	3.01	1.0	31.0	0.49	0.22	new
+TCGA-CQ-6223-01	TCGA-CQ-6223-01A-11D-1910-01	called	0.68	1.98	0.0	12.0	0.68	0.22	new
+TCGA-CQ-6224-01	TCGA-CQ-6224-01A-11D-1910-01	called	0.27	3.36	1.0	48.0	0.38	0.24	new
+TCGA-CQ-6225-01	TCGA-CQ-6225-01A-11D-1910-01	called	0.81	3.25	1.0	15.0	0.88	0.27	new
+TCGA-CQ-6227-01	TCGA-CQ-6227-01A-11D-1910-01	called	0.33	1.88	0.0	30.0	0.31	0.19	new
+TCGA-CQ-6228-01	TCGA-CQ-6228-01A-11D-1910-01	called	0.85	1.96	0.0	9.0	0.85	0.16	new
+TCGA-CQ-6229-01	TCGA-CQ-6229-01A-11D-1910-01	called	0.23	3.06	1.0	53.0	0.31	0.33	new
+TCGA-CQ-7063-01	TCGA-CQ-7063-01A-11D-2390-01	called	0.44	2.1	0.0	19.0	0.45	0.04	new
+TCGA-CQ-7064-01	TCGA-CQ-7064-01A-11D-2390-01	called	0.4	1.87	0.0	20.0	0.38	0.35	new
+TCGA-CQ-7065-01	TCGA-CQ-7065-01A-11D-2077-01	called	0.75	1.97	0.0	11.0	0.75	0.03	new
+TCGA-CQ-7068-01	TCGA-CQ-7068-01A-11D-2077-01	called	0.63	2.16	0.0	13.0	0.65	0.0	new
+TCGA-CQ-7069-01	TCGA-CQ-7069-01A-11D-2390-01	called	0.51	1.64	0.0	15.0	0.46	0.27	new
+TCGA-CQ-7071-01	TCGA-CQ-7071-01A-12D-A30D-01	called	0.54	2.0	0.0	15.0	0.54	0.03	new
+TCGA-CQ-7072-01	TCGA-CQ-7072-01A-21D-A30D-01	called	0.36	3.28	1.0	36.0	0.48	0.08	new
+TCGA-CQ-A4C6-01	TCGA-CQ-A4C6-01A-11D-A253-01	called	0.36	2.23	0.0	28.0	0.39	0.13	new
+TCGA-CQ-A4C9-01	TCGA-CQ-A4C9-01A-11D-A253-01	called	0.41	4.28	2.0	37.0	0.6	0.4	new
+TCGA-CQ-A4CA-01	TCGA-CQ-A4CA-01A-11D-A253-01	called	0.29	1.8	0.0	35.0	0.27	0.56	new
+TCGA-CQ-A4CB-01	TCGA-CQ-A4CB-01A-11D-A253-01	called	0.37	1.93	0.0	25.0	0.36	0.02	new
+TCGA-CQ-A4CD-01	TCGA-CQ-A4CD-01A-21D-A253-01	called	0.52	2.06	0.0	16.0	0.52	0.01	new
+TCGA-CQ-A4CE-01	TCGA-CQ-A4CE-01A-11D-A25X-01	called	0.27	3.55	1.0	49.0	0.39	0.36	new
+TCGA-CQ-A4CG-01	TCGA-CQ-A4CG-01A-11D-A25X-01	called	0.75	2.27	0.0	12.0	0.77	0.03	new
+TCGA-CQ-A4CI-01	TCGA-CQ-A4CI-01A-11D-A25X-01	called	0.8	1.81	0.0	9.0	0.78	0.07	new
+TCGA-CR-5243-01	TCGA-CR-5243-01A-01D-1510-01	called	0.81	2.03	0.0	10.0	0.81	0.05	new
+TCGA-CR-5247-01	TCGA-CR-5247-01A-01D-2010-01	called	0.64	3.3	1.0	18.0	0.74	0.42	new
+TCGA-CR-5248-01	TCGA-CR-5248-01A-01D-2010-01	called	0.47	1.84	0.0	17.0	0.45	0.01	new
+TCGA-CR-5249-01	TCGA-CR-5249-01A-01D-1510-01	called	0.54	2.05	0.0	15.0	0.54	0.05	new
+TCGA-CR-5250-01	TCGA-CR-5250-01A-01D-1510-01	called	0.7	1.93	0.0	11.0	0.69	0.0	new
+TCGA-CR-6467-01	TCGA-CR-6467-01A-11D-1869-01	called	0.66	2.35	0.0	14.0	0.69	0.01	new
+TCGA-CR-6470-01	TCGA-CR-6470-01A-11D-1869-01	called	0.49	2.04	0.0	17.0	0.49	0.02	new
+TCGA-CR-6471-01	TCGA-CR-6471-01A-11D-1869-01	called	0.53	2.09	0.0	16.0	0.55	0.0	new
+TCGA-CR-6472-01	TCGA-CR-6472-01A-11D-1869-01	called	0.75	1.78	0.0	10.0	0.73	0.01	new
+TCGA-CR-6473-01	TCGA-CR-6473-01A-11D-1869-01	called	0.86	2.05	0.0	9.0	0.86	0.0	new
+TCGA-CR-6474-01	TCGA-CR-6474-01A-11D-1869-01	called	0.2	4.01	2.0	66.0	0.33	0.26	new
+TCGA-CR-6477-01	TCGA-CR-6477-01A-11D-1869-01	called	0.29	3.45	1.0	44.0	0.42	0.23	new
+TCGA-CR-6478-01	TCGA-CR-6478-01A-11D-1869-01	called	0.28	3.26	1.0	45.0	0.39	0.16	new
+TCGA-CR-6480-01	TCGA-CR-6480-01A-11D-1869-01	called	0.78	2.02	0.0	10.0	0.78	0.03	new
+TCGA-CR-6481-01	TCGA-CR-6481-01A-11D-1869-01	called	0.31	1.89	0.0	33.0	0.3	0.02	new
+TCGA-CR-6484-01	TCGA-CR-6484-01A-11D-1869-01	called	0.3	2.7	1.0	39.0	0.36	0.28	new
+TCGA-CR-6487-01	TCGA-CR-6487-01A-11D-1869-01	called	0.39	2.06	0.0	21.0	0.4	0.08	new
+TCGA-CR-6488-01	TCGA-CR-6488-01A-12D-2077-01	called	0.29	3.28	1.0	44.0	0.4	0.3	new
+TCGA-CR-6491-01	TCGA-CR-6491-01A-11D-1869-01	called	0.75	1.96	0.0	10.0	0.75	0.25	new
+TCGA-CR-6493-01	TCGA-CR-6493-01A-11D-1869-01	called	0.67	3.81	1.0	20.0	0.79	0.03	new
+TCGA-CR-7364-01	TCGA-CR-7364-01A-11D-2010-01	called	0.54	1.87	0.0	15.0	0.53	0.06	new
+TCGA-CR-7365-01	TCGA-CR-7365-01A-11D-2010-01	called	0.51	3.53	1.0	26.0	0.64	0.11	new
+TCGA-CR-7367-01	TCGA-CR-7367-01A-11D-2010-01	called	0.34	3.38	1.0	39.0	0.46	0.23	new
+TCGA-CR-7368-01	TCGA-CR-7368-01A-11D-2128-01	called	0.71	2.08	0.0	12.0	0.71	0.15	new
+TCGA-CR-7369-01	TCGA-CR-7369-01A-11D-2128-01	called	0.53	1.89	0.0	15.0	0.52	0.03	new
+TCGA-CR-7370-01	TCGA-CR-7370-01A-11D-2128-01	called	0.62	3.43	1.0	19.0	0.74	0.23	new
+TCGA-CR-7371-01	TCGA-CR-7371-01A-11D-2010-01	called	0.39	1.78	0.0	20.0	0.37	0.18	new
+TCGA-CR-7372-01	TCGA-CR-7372-01A-11D-2010-01	called	0.41	2.83	1.0	28.0	0.5	0.53	new
+TCGA-CR-7373-01	TCGA-CR-7373-01A-11D-2010-01	called	0.45	3.62	1.0	31.0	0.6	0.17	new
+TCGA-CR-7374-01	TCGA-CR-7374-01A-11D-2010-01	called	0.65	1.69	0.0	11.0	0.61	0.17	new
+TCGA-CR-7376-01	TCGA-CR-7376-01A-11D-2128-01	called	0.16	2.03	0.0	70.0	0.16	0.03	new
+TCGA-CR-7377-01	TCGA-CR-7377-01A-11D-2010-01	called	0.24	2.04	0.0	45.0	0.24	0.25	new
+TCGA-CR-7379-01	TCGA-CR-7379-01A-11D-2010-01	called	0.37	3.34	1.0	36.0	0.49	0.38	new
+TCGA-CR-7380-01	TCGA-CR-7380-01A-11D-2010-01	called	0.66	1.82	0.0	11.0	0.64	0.43	new
+TCGA-CR-7382-01	TCGA-CR-7382-01A-11D-2128-01	called	0.21	2.14	0.0	52.0	0.22	0.05	new
+TCGA-CR-7383-01	TCGA-CR-7383-01A-11D-2128-01	called	0.33	3.21	1.0	38.0	0.44	0.13	new
+TCGA-CR-7385-01	TCGA-CR-7385-01A-11D-2010-01	called	0.51	1.94	0.0	16.0	0.51	0.11	new
+TCGA-CR-7386-01	TCGA-CR-7386-01A-11D-2010-01	called	0.31	1.96	0.0	33.0	0.3	0.29	new
+TCGA-CR-7388-01	TCGA-CR-7388-01A-11D-2010-01	called	0.4	1.96	0.0	21.0	0.4	0.23	new
+TCGA-CR-7389-01	TCGA-CR-7389-01A-11D-2010-01	called	0.41	2.58	1.0	26.0	0.48	0.35	new
+TCGA-CR-7390-01	TCGA-CR-7390-01A-11D-2010-01	called	0.47	3.49	1.0	28.0	0.61	0.11	new
+TCGA-CR-7392-01	TCGA-CR-7392-01A-11D-2010-01	called	0.23	2.01	0.0	47.0	0.23	0.35	new
+TCGA-CR-7393-01	TCGA-CR-7393-01A-11D-2010-01	called	0.26	2.0	0.0	41.0	0.26	0.0	new
+TCGA-CR-7394-01	TCGA-CR-7394-01A-11D-2010-01	called	0.2	2.0	0.0	54.0	0.2	0.12	new
+TCGA-CR-7395-01	TCGA-CR-7395-01A-11D-2010-01	called	0.24	2.03	0.0	44.0	0.25	0.09	new
+TCGA-CR-7397-01	TCGA-CR-7397-01A-11D-2010-01	called	0.18	2.51	1.0	63.0	0.22	0.28	new
+TCGA-CR-7398-01	TCGA-CR-7398-01A-11D-2010-01	called	0.79	1.94	0.0	10.0	0.79	0.12	new
+TCGA-CR-7399-01	TCGA-CR-7399-01A-11D-2010-01	called	0.51	2.94	1.0	20.0	0.61	0.12	new
+TCGA-CR-7401-01	TCGA-CR-7401-01A-11D-2010-01	called	0.33	2.03	0.0	31.0	0.34	0.1	new
+TCGA-CR-7402-01	TCGA-CR-7402-01A-11D-2010-01	called	0.61	2.04	0.0	14.0	0.61	0.16	new
+TCGA-CR-7404-01	TCGA-CR-7404-01A-11D-2128-01	called	0.4	1.98	0.0	21.0	0.4	0.44	new
+TCGA-CV-5430-01	TCGA-CV-5430-01A-02D-1682-01	called	0.57	3.55	1.0	21.0	0.7	0.2	new
+TCGA-CV-5432-01	TCGA-CV-5432-01A-02D-1682-01	called	0.47	5.35	2.0	40.0	0.7	0.12	new
+TCGA-CV-5434-01	TCGA-CV-5434-01A-01D-1682-01	called	0.58	3.07	1.0	19.0	0.68	0.09	new
+TCGA-CV-5435-01	TCGA-CV-5435-01A-01D-1682-01	called	0.66	3.71	2.0	20.0	0.78	0.15	new
+TCGA-CV-5436-01	TCGA-CV-5436-01A-01D-1510-01	called	0.68	2.15	0.0	13.0	0.69	0.02	new
+TCGA-CV-5439-01	TCGA-CV-5439-01A-01D-1682-01	called	0.47	4.03	1.0	32.0	0.64	0.24	new
+TCGA-CV-5440-01	TCGA-CV-5440-01A-01D-1510-01	called	0.69	3.47	1.0	18.0	0.79	0.09	new
+TCGA-CV-5441-01	TCGA-CV-5441-01A-01D-1510-01	called	0.63	1.96	0.0	13.0	0.62	0.25	new
+TCGA-CV-5442-01	TCGA-CV-5442-01A-01D-1510-01	called	0.85	2.48	1.0	11.0	0.87	0.01	new
+TCGA-CV-5443-01	TCGA-CV-5443-01A-01D-1510-01	called	0.58	1.93	0.0	14.0	0.57	0.0	new
+TCGA-CV-5444-01	TCGA-CV-5444-01A-02D-1510-01	called	0.27	3.39	1.0	47.0	0.39	0.23	new
+TCGA-CV-5966-01	TCGA-CV-5966-01A-11D-1682-01	called	0.26	3.97	1.0	52.0	0.42	0.12	new
+TCGA-CV-5970-01	TCGA-CV-5970-01A-11D-1682-01	called	0.4	3.29	1.0	32.0	0.52	0.12	new
+TCGA-CV-5971-01	TCGA-CV-5971-01A-11D-1682-01	called	1.0	2.0	0.0	8.0	1.0	0.13	new
+TCGA-CV-5973-01	TCGA-CV-5973-01A-11D-1682-01	called	0.7	2.98	1.0	16.0	0.77	0.03	new
+TCGA-CV-5976-01	TCGA-CV-5976-01A-11D-1682-01	called	0.55	1.97	0.0	15.0	0.55	0.12	new
+TCGA-CV-5977-01	TCGA-CV-5977-01A-11D-1682-01	called	0.66	3.79	1.0	20.0	0.79	0.12	new
+TCGA-CV-5978-01	TCGA-CV-5978-01A-11D-1682-01	called	0.38	3.08	1.0	33.0	0.48	0.24	new
+TCGA-CV-5979-01	TCGA-CV-5979-01A-11D-1682-01	called	0.86	1.99	0.0	9.0	0.85	0.15	new
+TCGA-CV-6003-01	TCGA-CV-6003-01A-11D-1682-01	called	0.56	3.5	1.0	21.0	0.69	0.08	new
+TCGA-CV-6433-01	TCGA-CV-6433-01A-11D-1682-01	called	0.73	2.17	0.0	12.0	0.74	0.02	new
+TCGA-CV-6436-01	TCGA-CV-6436-01A-11D-1682-01	called	0.37	2.09	0.0	27.0	0.38	0.11	new
+TCGA-CV-6441-01	TCGA-CV-6441-01A-11D-1682-01	called	0.7	3.61	1.0	18.0	0.81	0.07	new
+TCGA-CV-6933-01	TCGA-CV-6933-01A-11D-1910-01	called	0.48	3.49	1.0	28.0	0.62	0.22	new
+TCGA-CV-6934-01	TCGA-CV-6934-01A-11D-1910-01	called	0.44	2.06	0.0	19.0	0.44	0.16	new
+TCGA-CV-6935-01	TCGA-CV-6935-01A-11D-1910-01	called	0.8	1.85	0.0	9.0	0.79	0.12	new
+TCGA-CV-6936-01	TCGA-CV-6936-01A-11D-1910-01	called	0.62	2.24	0.0	14.0	0.64	0.06	new
+TCGA-CV-6937-01	TCGA-CV-6937-01A-11D-2010-01	called	0.28	3.58	1.0	47.0	0.41	0.12	new
+TCGA-CV-6938-01	TCGA-CV-6938-01A-11D-1910-01	called	0.23	2.11	0.0	47.0	0.24	0.29	new
+TCGA-CV-6939-01	TCGA-CV-6939-01A-11D-1910-01	called	0.46	2.08	0.0	18.0	0.47	0.16	new
+TCGA-CV-6940-01	TCGA-CV-6940-01A-11D-1910-01	called	0.6	3.65	1.0	21.0	0.74	0.27	new
+TCGA-CV-6941-01	TCGA-CV-6941-01A-11D-1910-01	called	0.56	3.12	1.0	20.0	0.66	0.16	new
+TCGA-CV-6942-01	TCGA-CV-6942-01A-21D-2010-01	called	0.44	1.93	0.0	18.0	0.43	0.12	new
+TCGA-CV-6943-01	TCGA-CV-6943-01A-11D-1910-01	called	0.21	2.02	0.0	51.0	0.21	0.13	new
+TCGA-CV-6945-01	TCGA-CV-6945-01A-11D-1910-01	called	0.4	3.43	1.0	33.0	0.54	0.09	new
+TCGA-CV-6948-01	TCGA-CV-6948-01A-11D-1910-01	called	0.84	1.84	0.0	9.0	0.83	0.09	new
+TCGA-CV-6950-01	TCGA-CV-6950-01A-11D-1910-01	called	0.44	4.25	2.0	35.0	0.62	0.08	new
+TCGA-CV-6951-01	TCGA-CV-6951-01A-11D-1910-01	called	0.63	3.27	1.0	18.0	0.74	0.02	new
+TCGA-CV-6952-01	TCGA-CV-6952-01A-11D-1910-01	called	0.51	2.05	0.0	16.0	0.52	0.09	new
+TCGA-CV-6953-01	TCGA-CV-6953-01A-11D-1910-01	called	0.45	1.96	0.0	18.0	0.45	0.13	new
+TCGA-CV-6954-01	TCGA-CV-6954-01A-11D-1910-01	called	0.49	3.06	1.0	21.0	0.6	0.11	new
+TCGA-CV-6955-01	TCGA-CV-6955-01A-11D-2062-01	called	0.5	1.99	0.0	17.0	0.5	0.12	new
+TCGA-CV-6956-01	TCGA-CV-6956-01A-21D-2062-01	called	0.58	3.8	1.0	24.0	0.72	0.07	new
+TCGA-CV-6959-01	TCGA-CV-6959-01A-11D-1910-01	called	0.4	3.21	1.0	32.0	0.51	0.04	new
+TCGA-CV-6960-01	TCGA-CV-6960-01A-41D-2010-01	called	0.67	1.87	0.0	11.0	0.65	0.0	new
+TCGA-CV-6961-01	TCGA-CV-6961-01A-21D-1910-01	called	0.57	1.92	0.0	14.0	0.56	0.07	new
+TCGA-CV-6962-01	TCGA-CV-6962-01A-11D-1910-01	called	0.72	3.04	1.0	16.0	0.8	0.21	new
+TCGA-CV-7089-01	TCGA-CV-7089-01A-11D-2010-01	called	0.26	2.05	0.0	41.0	0.26	0.13	new
+TCGA-CV-7090-01	TCGA-CV-7090-01A-11D-2010-01	called	0.38	3.27	1.0	34.0	0.5	0.1	new
+TCGA-CV-7091-01	TCGA-CV-7091-01A-11D-2010-01	called	0.45	2.82	1.0	23.0	0.54	0.12	new
+TCGA-CV-7095-01	TCGA-CV-7095-01A-21D-2010-01	called	0.56	2.04	0.0	15.0	0.56	0.36	new
+TCGA-CV-7097-01	TCGA-CV-7097-01A-11D-2010-01	called	0.54	2.0	0.0	15.0	0.54	0.34	new
+TCGA-CV-7099-01	TCGA-CV-7099-01A-41D-2010-01	called	0.57	2.02	0.0	14.0	0.57	0.09	new
+TCGA-CV-7100-01	TCGA-CV-7100-01A-11D-2010-01	called	0.59	1.98	0.0	14.0	0.59	0.01	new
+TCGA-CV-7101-01	TCGA-CV-7101-01A-11D-2010-01	called	0.4	3.07	1.0	31.0	0.5	0.48	new
+TCGA-CV-7102-01	TCGA-CV-7102-01A-11D-2010-01	called	0.47	3.2	1.0	26.0	0.58	0.04	new
+TCGA-CV-7103-01	TCGA-CV-7103-01A-21D-2010-01	called	0.67	1.88	0.0	12.0	0.65	0.1	new
+TCGA-CV-7104-01	TCGA-CV-7104-01A-11D-2010-01	called	0.53	1.89	0.0	15.0	0.52	0.17	new
+TCGA-CV-7177-01	TCGA-CV-7177-01A-11D-2010-01	called	0.63	2.1	0.0	13.0	0.65	0.12	new
+TCGA-CV-7178-01	TCGA-CV-7178-01A-21D-2010-01	called	0.45	2.68	1.0	21.0	0.53	0.07	new
+TCGA-CV-7180-01	TCGA-CV-7180-01A-11D-2010-01	called	0.42	1.77	0.0	19.0	0.39	0.34	new
+TCGA-CV-7183-01	TCGA-CV-7183-01A-11D-2010-01	called	0.51	2.0	0.0	16.0	0.51	0.05	new
+TCGA-CV-7235-01	TCGA-CV-7235-01A-11D-2010-01	called	0.54	2.89	1.0	19.0	0.63	0.3	new
+TCGA-CV-7236-01	TCGA-CV-7236-01A-11D-2010-01	called	0.26	2.07	0.0	40.0	0.27	0.11	new
+TCGA-CV-7238-01	TCGA-CV-7238-01A-11D-2010-01	called	0.25	2.11	0.0	44.0	0.26	0.4	new
+TCGA-CV-7242-01	TCGA-CV-7242-01A-11D-2010-01	called	0.5	1.78	0.0	15.0	0.47	0.29	new
+TCGA-CV-7243-01	TCGA-CV-7243-01A-11D-2010-01	called	0.45	3.4	1.0	29.0	0.58	0.07	new
+TCGA-CV-7245-01	TCGA-CV-7245-01A-11D-2010-01	called	0.63	3.22	1.0	18.0	0.73	0.21	new
+TCGA-CV-7247-01	TCGA-CV-7247-01A-11D-2010-01	called	0.46	4.96	2.0	39.0	0.68	0.39	new
+TCGA-CV-7248-01	TCGA-CV-7248-01A-11D-2010-01	called	0.39	1.71	0.0	20.0	0.36	0.33	new
+TCGA-CV-7250-01	TCGA-CV-7250-01A-11D-2010-01	called	0.65	2.25	0.0	14.0	0.68	0.11	new
+TCGA-CV-7252-01	TCGA-CV-7252-01A-11D-2010-01	called	0.47	1.91	0.0	17.0	0.46	0.1	new
+TCGA-CV-7253-01	TCGA-CV-7253-01A-11D-2010-01	called	0.83	2.02	0.0	10.0	0.83	0.11	new
+TCGA-CV-7254-01	TCGA-CV-7254-01A-11D-2010-01	called	0.37	2.9	1.0	32.0	0.46	0.43	new
+TCGA-CV-7255-01	TCGA-CV-7255-01A-11D-2010-01	called	0.65	3.52	1.0	19.0	0.77	0.11	new
+TCGA-CV-7261-01	TCGA-CV-7261-01A-11D-2010-01	called	0.52	3.35	1.0	22.0	0.65	0.45	new
+TCGA-CV-7263-01	TCGA-CV-7263-01A-11D-2010-01	called	0.41	3.7	1.0	34.0	0.56	0.15	new
+TCGA-CV-7406-01	TCGA-CV-7406-01A-11D-2077-01	called	0.6	2.01	0.0	14.0	0.6	0.02	new
+TCGA-CV-7407-01	TCGA-CV-7407-01A-11D-2077-01	called	0.39	3.64	1.0	35.0	0.54	0.4	new
+TCGA-CV-7410-01	TCGA-CV-7410-01A-21D-2077-01	called	0.24	2.07	0.0	46.0	0.24	0.18	new
+TCGA-CV-7411-01	TCGA-CV-7411-01A-11D-2077-01	called	0.24	4.0	1.0	57.0	0.38	0.0	new
+TCGA-CV-7413-01	TCGA-CV-7413-01A-11D-2077-01	called	0.44	1.86	0.0	18.0	0.42	0.07	new
+TCGA-CV-7414-01	TCGA-CV-7414-01A-11D-2077-01	called	0.82	1.97	0.0	9.0	0.82	0.08	new
+TCGA-CV-7415-01	TCGA-CV-7415-01A-11D-2077-01	called	0.45	3.6	1.0	31.0	0.59	0.23	new
+TCGA-CV-7416-01	TCGA-CV-7416-01A-11D-2077-01	called	0.62	2.65	1.0	16.0	0.68	0.28	new
+TCGA-CV-7418-01	TCGA-CV-7418-01A-11D-2077-01	called	0.74	1.82	0.0	10.0	0.72	0.18	new
+TCGA-CV-7421-01	TCGA-CV-7421-01A-11D-2077-01	called	0.42	3.37	1.0	31.0	0.55	0.25	new
+TCGA-CV-7422-01	TCGA-CV-7422-01A-21D-2077-01	called	0.27	3.14	1.0	47.0	0.36	0.17	new
+TCGA-CV-7423-01	TCGA-CV-7423-01A-11D-2077-01	called	0.47	4.27	2.0	33.0	0.66	0.35	new
+TCGA-CV-7424-01	TCGA-CV-7424-01A-11D-2077-01	called	0.48	3.23	1.0	25.0	0.6	0.36	new
+TCGA-CV-7425-01	TCGA-CV-7425-01A-11D-2077-01	called	0.49	2.06	0.0	17.0	0.49	0.21	new
+TCGA-CV-7427-01	TCGA-CV-7427-01A-11D-2077-01	called	0.5	2.09	0.0	17.0	0.51	0.11	new
+TCGA-CV-7429-01	TCGA-CV-7429-01A-11D-2128-01	called	0.52	2.1	0.0	16.0	0.53	0.45	new
+TCGA-CV-7430-01	TCGA-CV-7430-01A-11D-2128-01	called	0.76	1.98	0.0	10.0	0.76	0.03	new
+TCGA-CV-7432-01	TCGA-CV-7432-01A-11D-2128-01	called	0.49	3.69	1.0	29.0	0.64	0.19	new
+TCGA-CV-7433-01	TCGA-CV-7433-01A-11D-2128-01	called	0.3	1.65	0.0	32.0	0.26	0.43	new
+TCGA-CV-7434-01	TCGA-CV-7434-01A-11D-2128-01	called	0.71	2.25	0.0	12.0	0.73	0.02	new
+TCGA-CV-7435-01	TCGA-CV-7435-01A-11D-2128-01	called	0.39	3.4	1.0	34.0	0.52	0.04	new
+TCGA-CV-7437-01	TCGA-CV-7437-01A-21D-2128-01	called	0.65	2.65	1.0	15.0	0.71	0.11	new
+TCGA-CV-7438-01	TCGA-CV-7438-01A-21D-2128-01	called	0.5	2.02	0.0	16.0	0.5	0.39	new
+TCGA-CV-7440-01	TCGA-CV-7440-01A-11D-2128-01	called	0.45	3.38	1.0	29.0	0.58	0.24	new
+TCGA-CV-A45O-01	TCGA-CV-A45O-01A-21D-A24C-01	called	0.29	2.0	0.0	36.0	0.29	0.0	new
+TCGA-CV-A45P-01	TCGA-CV-A45P-01A-11D-A24C-01	called	0.38	2.04	0.0	25.0	0.38	0.07	new
+TCGA-CV-A45Q-01	TCGA-CV-A45Q-01A-11D-A24C-01	called	0.54	2.11	0.0	16.0	0.56	0.01	new
+TCGA-CV-A45R-01	TCGA-CV-A45R-01A-11D-A24C-01	called	0.43	3.2	1.0	29.0	0.55	0.04	new
+TCGA-CV-A45T-01	TCGA-CV-A45T-01A-11D-A24C-01	called	0.21	2.21	0.0	54.0	0.22	0.38	new
+TCGA-CV-A45U-01	TCGA-CV-A45U-01A-12D-A24C-01	called	0.34	5.27	2.0	49.0	0.58	0.43	new
+TCGA-CV-A45V-01	TCGA-CV-A45V-01A-21D-A253-01	called	0.46	2.06	0.0	18.0	0.47	0.04	new
+TCGA-CV-A45W-01	TCGA-CV-A45W-01A-11D-A253-01	called	0.42	2.58	1.0	25.0	0.48	0.66	new
+TCGA-CV-A45X-01	TCGA-CV-A45X-01A-21D-A253-01	called	0.34	3.45	1.0	39.0	0.47	0.05	new
+TCGA-CV-A45Y-01	TCGA-CV-A45Y-01A-11D-A253-01	called	0.5	2.05	0.0	17.0	0.51	0.33	new
+TCGA-CV-A45Z-01	TCGA-CV-A45Z-01A-21D-A253-01	called	0.31	3.44	1.0	42.0	0.44	0.43	new
+TCGA-CV-A460-01	TCGA-CV-A460-01A-21D-A253-01	called	0.48	1.76	0.0	16.0	0.44	0.05	new
+TCGA-CV-A461-01	TCGA-CV-A461-01A-41D-A25X-01	called	0.46	2.04	0.0	18.0	0.46	0.18	new
+TCGA-CV-A463-01	TCGA-CV-A463-01A-11D-A25X-01	called	0.57	2.2	0.0	15.0	0.6	0.03	new
+TCGA-CV-A464-01	TCGA-CV-A464-01A-11D-A25X-01	called	0.28	2.03	0.0	38.0	0.28	0.17	new
+TCGA-CV-A465-01	TCGA-CV-A465-01A-11D-A25X-01	called	0.33	3.73	1.0	41.0	0.48	0.28	new
+TCGA-CV-A6JD-01	TCGA-CV-A6JD-01A-11D-A31K-01	called	0.6	2.06	0.0	14.0	0.6	0.02	new
+TCGA-CV-A6JE-01	TCGA-CV-A6JE-01A-11D-A31K-01	called	0.47	3.3	1.0	27.0	0.59	0.16	new
+TCGA-CV-A6JM-01	TCGA-CV-A6JM-01A-11D-A31K-01	called	0.58	2.65	1.0	17.0	0.64	0.13	new
+TCGA-CV-A6JN-01	TCGA-CV-A6JN-01A-11D-A31K-01	called	0.56	1.99	0.0	15.0	0.56	0.08	new
+TCGA-CV-A6JO-01	TCGA-CV-A6JO-01B-11D-A34I-01	called	0.26	2.17	0.0	43.0	0.27	0.0	new
+TCGA-CV-A6JT-01	TCGA-CV-A6JT-01A-11D-A31K-01	called	0.5	2.03	0.0	17.0	0.5	0.02	new
+TCGA-CV-A6JU-01	TCGA-CV-A6JU-01A-11D-A31K-01	called	0.4	1.91	0.0	20.0	0.39	0.01	new
+TCGA-CV-A6JY-01	TCGA-CV-A6JY-01A-11D-A31K-01	called	0.48	1.89	0.0	17.0	0.47	0.59	new
+TCGA-CV-A6JZ-01	TCGA-CV-A6JZ-01A-11D-A31K-01	called	0.35	2.26	0.0	30.0	0.37	0.04	new
+TCGA-CV-A6K0-01	TCGA-CV-A6K0-01B-21D-A31K-01	called	0.18	4.1	1.0	74.0	0.3	0.42	new
+TCGA-CV-A6K1-01	TCGA-CV-A6K1-01A-11D-A31K-01	called	0.64	1.86	0.0	12.0	0.62	0.0	new
+TCGA-CV-A6K2-01	TCGA-CV-A6K2-01A-11D-A31K-01	called	0.39	2.03	0.0	21.0	0.4	0.07	new
+TCGA-CX-7085-01	TCGA-CX-7085-01A-21D-2010-01	called	0.19	2.0	0.0	57.0	0.19	0.0	new
+TCGA-CX-7086-01	TCGA-CX-7086-01A-11D-2077-01	called	0.7	3.29	1.0	17.0	0.8	0.25	new
+TCGA-CX-7219-01	TCGA-CX-7219-01A-11D-2010-01	called	0.55	1.71	0.0	14.0	0.51	0.22	new
+TCGA-CX-A4AQ-01	TCGA-CX-A4AQ-01A-11D-A253-01	called	0.47	4.0	1.0	32.0	0.64	0.05	new
+TCGA-D6-6515-01	TCGA-D6-6515-01A-21D-1869-01	called	0.17	2.13	0.0	66.0	0.18	0.09	new
+TCGA-D6-6516-01	TCGA-D6-6516-01A-11D-1869-01	called	0.52	3.3	1.0	21.0	0.64	0.1	new
+TCGA-D6-6517-01	TCGA-D6-6517-01A-11D-1869-01	called	0.44	2.08	0.0	19.0	0.45	0.01	new
+TCGA-D6-6823-01	TCGA-D6-6823-01A-11D-1910-01	called	0.45	3.55	1.0	30.0	0.59	0.11	new
+TCGA-D6-6824-01	TCGA-D6-6824-01A-11D-1910-01	called	0.68	2.0	0.0	12.0	0.68	0.05	new
+TCGA-D6-6825-01	TCGA-D6-6825-01A-21D-1910-01	called	0.42	1.93	0.0	20.0	0.41	0.02	new
+TCGA-D6-6826-01	TCGA-D6-6826-01A-11D-1910-01	called	0.34	2.75	1.0	34.0	0.42	0.11	new
+TCGA-D6-6827-01	TCGA-D6-6827-01A-11D-1910-01	called	0.75	2.14	0.0	11.0	0.77	0.03	new
+TCGA-D6-8568-01	TCGA-D6-8568-01A-11D-2390-01	called	0.38	2.08	0.0	24.0	0.39	0.06	new
+TCGA-D6-8569-01	TCGA-D6-8569-01A-11D-2390-01	called	0.43	3.41	1.0	30.0	0.57	0.05	new
+TCGA-D6-A4Z9-01	TCGA-D6-A4Z9-01A-11D-A253-01	called	0.5	1.9	0.0	16.0	0.48	0.09	new
+TCGA-D6-A4ZB-01	TCGA-D6-A4ZB-01A-11D-A253-01	called	0.44	1.98	0.0	19.0	0.44	0.59	new
+TCGA-D6-A6EK-01	TCGA-D6-A6EK-01A-11D-A31K-01	called	0.43	2.1	0.0	20.0	0.44	0.01	new
+TCGA-D6-A6EM-01	TCGA-D6-A6EM-01A-21D-A31K-01	called	0.32	2.75	1.0	37.0	0.39	0.05	new
+TCGA-D6-A6EN-01	TCGA-D6-A6EN-01A-11D-A31K-01	called	0.51	2.12	0.0	17.0	0.52	0.06	new
+TCGA-D6-A6EO-01	TCGA-D6-A6EO-01A-11D-A31K-01	called	0.71	1.98	0.0	11.0	0.71	0.02	new
+TCGA-D6-A6EP-01	TCGA-D6-A6EP-01A-11D-A31K-01	called	0.83	3.72	2.0	17.0	0.9	0.19	new
+TCGA-D6-A6EQ-01	TCGA-D6-A6EQ-01A-11D-A31K-01	called	0.39	3.85	1.0	36.0	0.56	0.12	new
+TCGA-D6-A6ES-01	TCGA-D6-A6ES-01A-12D-A31K-01	called	0.72	1.96	0.0	11.0	0.72	0.01	new
+TCGA-D6-A74Q-01	TCGA-D6-A74Q-01A-11D-A34I-01	called	0.65	1.92	0.0	12.0	0.64	0.38	new
+TCGA-DQ-5624-01	TCGA-DQ-5624-01A-01D-1869-01	called	0.27	3.82	2.0	50.0	0.41	0.32	new
+TCGA-DQ-5625-01	TCGA-DQ-5625-01A-01D-1869-01	called	0.46	2.47	0.0	20.0	0.51	0.05	new
+TCGA-DQ-5629-01	TCGA-DQ-5629-01A-01D-1869-01	called	0.59	3.41	1.0	20.0	0.71	0.35	new
+TCGA-DQ-5630-01	TCGA-DQ-5630-01A-01D-1869-01	called	0.27	2.02	0.0	39.0	0.27	0.23	new
+TCGA-DQ-5631-01	TCGA-DQ-5631-01A-01D-1869-01	called	0.58	3.06	1.0	19.0	0.68	0.16	new
+TCGA-DQ-7588-01	TCGA-DQ-7588-01A-11D-2077-01	called	0.6	3.42	1.0	20.0	0.72	0.11	new
+TCGA-DQ-7591-01	TCGA-DQ-7591-01A-11D-2077-01	called	0.73	1.95	0.0	11.0	0.72	0.01	new
+TCGA-DQ-7592-01	TCGA-DQ-7592-01A-11D-2077-01	called	0.46	3.23	1.0	27.0	0.58	0.03	new
+TCGA-DQ-7593-01	TCGA-DQ-7593-01A-11D-2228-01	called	0.38	1.91	0.0	23.0	0.37	0.09	new
+TCGA-DQ-7596-01	TCGA-DQ-7596-01A-11D-2228-01	called	0.45	2.1	0.0	19.0	0.47	0.15	new
+TCGA-F7-7848-01	TCGA-F7-7848-01A-11D-2128-01	called	0.57	1.77	0.0	13.0	0.54	0.12	new
+TCGA-F7-8298-01	TCGA-F7-8298-01A-11D-2390-01	called	0.53	2.11	0.0	16.0	0.55	0.08	new
+TCGA-F7-8489-01	TCGA-F7-8489-01A-31D-2390-01	called	0.27	1.96	0.0	39.0	0.26	0.29	new
+TCGA-F7-A50G-01	TCGA-F7-A50G-01A-11D-A25X-01	called	0.37	2.72	1.0	31.0	0.45	0.01	new
+TCGA-F7-A50I-01	TCGA-F7-A50I-01A-11D-A28Q-01	called	0.26	3.9	1.0	52.0	0.4	0.14	new
+TCGA-F7-A50J-01	TCGA-F7-A50J-01A-21D-A28Q-01	called	0.31	3.71	2.0	43.0	0.46	0.17	new
+TCGA-F7-A61S-01	TCGA-F7-A61S-01A-11D-A28Q-01	called	0.51	2.16	0.0	17.0	0.53	0.32	new
+TCGA-F7-A61V-01	TCGA-F7-A61V-01A-11D-A28Q-01	called	0.58	2.01	0.0	14.0	0.58	0.0	new
+TCGA-F7-A61W-01	TCGA-F7-A61W-01A-11D-A28Q-01	called	0.82	1.85	0.0	9.0	0.81	0.05	new
+TCGA-F7-A620-01	TCGA-F7-A620-01A-11D-A28Q-01	called	0.37	1.9	0.0	25.0	0.36	0.43	new
+TCGA-F7-A622-01	TCGA-F7-A622-01A-11D-A28Q-01	called	0.7	2.1	0.0	12.0	0.71	0.11	new
+TCGA-F7-A623-01	TCGA-F7-A623-01A-11D-A28Q-01	called	0.41	4.02	2.0	36.0	0.58	0.17	new
+TCGA-F7-A624-01	TCGA-F7-A624-01A-22D-A30D-01	called	0.5	2.1	0.0	17.0	0.52	0.1	new
+TCGA-H7-7774-01	TCGA-H7-7774-01A-21D-2077-01	called	0.57	2.09	0.0	15.0	0.58	0.2	new
+TCGA-H7-8501-01	TCGA-H7-8501-01A-11D-2390-01	called	0.43	2.03	0.0	20.0	0.43	0.13	new
+TCGA-H7-8502-01	TCGA-H7-8502-01A-11D-2390-01	called	0.79	2.04	0.0	10.0	0.8	0.06	new
+TCGA-H7-A6C4-01	TCGA-H7-A6C4-01A-11D-A30D-01	called	0.35	1.92	0.0	28.0	0.34	0.2	new
+TCGA-H7-A6C5-01	TCGA-H7-A6C5-01A-11D-A30D-01	called	0.58	1.83	0.0	13.0	0.56	0.11	new
+TCGA-H7-A76A-01	TCGA-H7-A76A-01A-51D-A34I-01	called	0.29	2.14	0.0	37.0	0.3	0.03	new
+TCGA-HD-7229-01	TCGA-HD-7229-01A-11D-2010-01	called	0.57	2.17	0.0	15.0	0.59	0.02	new
+TCGA-HD-7753-01	TCGA-HD-7753-01A-11D-2077-01	called	0.63	1.66	0.0	11.0	0.59	0.2	new
+TCGA-HD-7754-01	TCGA-HD-7754-01A-11D-2077-01	called	0.75	2.12	0.0	11.0	0.76	0.01	new
+TCGA-HD-7831-01	TCGA-HD-7831-01A-11D-2128-01	called	0.36	1.78	0.0	24.0	0.34	0.25	new
+TCGA-HD-7832-01	TCGA-HD-7832-01A-11D-2128-01	called	0.73	2.27	0.0	12.0	0.75	0.06	new
+TCGA-HD-8224-01	TCGA-HD-8224-01A-11D-2390-01	called	0.64	2.1	0.0	13.0	0.65	0.11	new
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+TCGA-K7-A5RF-01	TCGA-K7-A5RF-01A-11D-A28W-01								new
+TCGA-3H-AB3O-01	TCGA-3H-AB3O-01A-11D-A39Q-01								new
+TCGA-TS-A8AV-01	TCGA-TS-A8AV-01A-12D-A39Q-01								new
+TCGA-06-0139-01	TCGA-06-0139-01B-05D-0214-01								new
+TCGA-06-0142-01	TCGA-06-0142-01A-01D-0214-01								new
+TCGA-06-0189-01	TCGA-06-0189-01A-01D-0236-01								new
+TCGA-06-0881-01	TCGA-06-0881-01A-02D-0384-01								new
+TCGA-06-5410-01	TCGA-06-5410-01A-01D-1694-01								new
+TCGA-CQ-A4CH-01	TCGA-CQ-A4CH-01A-11D-A25X-01								new
+TCGA-CR-6492-01	TCGA-CR-6492-01A-12D-2077-01								new
+TCGA-CR-7391-01	TCGA-CR-7391-01A-11D-2010-01								new
+TCGA-CV-A468-01	TCGA-CV-A468-01A-11D-A25X-01								new
+TCGA-UF-A719-01	TCGA-UF-A719-01A-12D-A34I-01								new
+TCGA-75-7030-01	TCGA-75-7030-01A-11D-1943-01								new
+TCGA-78-8648-01	TCGA-78-8648-01A-11D-2389-01								new
+TCGA-2J-AABK-01	TCGA-2J-AABK-01A-31D-A40V-01								new
+TCGA-2J-AABR-01	TCGA-2J-AABR-01A-11D-A40V-01								new
+TCGA-3E-AAAY-01	TCGA-3E-AAAY-01A-11D-A38F-01								new
+TCGA-HV-A5A5-01	TCGA-HV-A5A5-01A-11D-A26H-01								new
+TCGA-HV-AA8V-01	TCGA-HV-AA8V-01A-11D-A40V-01								new
+TCGA-HZ-7923-01	TCGA-HZ-7923-01A-12D-2153-01								new
+TCGA-HZ-7926-01	TCGA-HZ-7926-01A-11D-2153-01								new
+TCGA-HZ-8001-01	TCGA-HZ-8001-01A-11D-2200-01								new
+TCGA-HZ-8003-01	TCGA-HZ-8003-01A-21D-2200-01								new
+TCGA-RB-AA9M-01	TCGA-RB-AA9M-01A-11D-A396-01								new
+TCGA-DK-A3WY-01	TCGA-DK-A3WY-01A-11D-A22Y-01								new
+TCGA-FD-A3B8-01	TCGA-FD-A3B8-01A-31D-A20B-01								new
+TCGA-XF-A9SL-01	TCGA-XF-A9SL-01A-11D-A390-01								new
+TCGA-ZF-AA5P-01	TCGA-ZF-AA5P-01A-11D-A390-01								new
+TCGA-BJ-A192-01	TCGA-BJ-A192-01A-31D-A13V-01								new
+TCGA-BJ-A45J-01	TCGA-BJ-A45J-01A-11D-A23T-01								new
+TCGA-CE-A481-01	TCGA-CE-A481-01A-21D-A23T-01								new
+TCGA-DJ-A2Q9-01	TCGA-DJ-A2Q9-01A-21D-A18E-01								new
+TCGA-DJ-A3US-01	TCGA-DJ-A3US-01A-11D-A22C-01								new
+TCGA-DJ-A3UX-01	TCGA-DJ-A3UX-01A-11D-A22C-01								new
+TCGA-E8-A2EA-01	TCGA-E8-A2EA-01A-11D-A17S-01								new
+TCGA-E8-A415-01	TCGA-E8-A415-01A-11D-A23L-01								new
+TCGA-E8-A416-01	TCGA-E8-A416-01A-11D-A23L-01								new
+TCGA-E8-A433-01	TCGA-E8-A433-01A-11D-A23L-01								new
+TCGA-E8-A436-01	TCGA-E8-A436-01A-12D-A23T-01								new
+TCGA-E8-A44M-01	TCGA-E8-A44M-01A-21D-A23T-01								new
+TCGA-EL-A3CY-01	TCGA-EL-A3CY-01A-11D-A19I-01								new
+TCGA-EL-A3GX-01	TCGA-EL-A3GX-01A-11D-A201-01								new
+TCGA-EL-A3GZ-01	TCGA-EL-A3GZ-01A-11D-A20A-01								new
+TCGA-EM-A2CU-01	TCGA-EM-A2CU-01A-12D-A17S-01								new
+TCGA-EM-A3AQ-01	TCGA-EM-A3AQ-01A-11D-A20A-01								new
+TCGA-ET-A40R-01	TCGA-ET-A40R-01A-11D-A23L-01								new
+TCGA-CG-4300-01	TCGA-CG-4300-01A-01D-1155-01								new
+TCGA-D7-A74B-01	TCGA-D7-A74B-01A-12D-A33S-01								new
+TCGA-FP-7735-01	TCGA-FP-7735-01A-11D-2052-01								new
+TCGA-FP-8209-01	TCGA-FP-8209-01A-11D-2338-01								new
+TCGA-HU-A4G3-01	TCGA-HU-A4G3-01A-11D-A24C-01								new
+TCGA-HU-A4GJ-01	TCGA-HU-A4GJ-01A-11D-A253-01								new
+TCGA-RD-A8N0-01	TCGA-RD-A8N0-01A-12D-A363-01								new
+TCGA-RD-A8NB-01	TCGA-RD-A8NB-01A-12D-A396-01								new
+TCGA-VQ-A8P8-01	TCGA-VQ-A8P8-01A-11D-A396-01								new
+TCGA-A5-A1OH-01	TCGA-A5-A1OH-01A-21D-A227-01								new
+TCGA-AB-2811-03	TCGA-AB-2811-03A-01D-0756-21								new
+TCGA-AB-2831-03	TCGA-AB-2831-03A-01D-0756-21								new
+TCGA-AB-2836-03	TCGA-AB-2836-03A-01D-0756-21								new
+TCGA-AB-2848-03	TCGA-AB-2848-03A-01D-0756-21								new
+TCGA-AB-2866-03	TCGA-AB-2866-03A-01D-0756-21								new
+TCGA-AB-2871-03	TCGA-AB-2871-03A-01D-0756-21								new
+TCGA-02-0001-01	GBM-TCGA-02-0001-Tumor	legacy_call	0.49	3.47	1.0	26.0	0.63		old
+TCGA-02-0006-01	GBM-TCGA-02-0006-Tumor	legacy_call	0.6	1.93	0.0	13.0	0.59		old
+TCGA-02-0007-01	GBM-TCGA-02-0007-Tumor	legacy_call	0.93	1.89	0.0	8.0	0.93		old
+TCGA-02-0009-01	GBM-TCGA-02-0009-Tumor	legacy_call	0.9	1.99	0.0	9.0	0.9		old
+TCGA-02-0010-01	GBM-TCGA-02-0010-Tumor	legacy_call	0.92	1.94	0.0	8.0	0.92		old
+TCGA-02-0011-01	GBM-TCGA-02-0011-Tumor	legacy_call	0.89	1.88	0.0	8.0	0.89		old
+TCGA-02-0014-01	GBM-TCGA-02-0014-Tumor	legacy_call	0.95	2.01	0.0	8.0	0.95		old
+TCGA-02-0015-01	GBM-TCGA-02-0015-Tumor	legacy_call	0.84	2.04	0.0	10.0	0.84		old
+TCGA-02-0016-01	GBM-TCGA-02-0016-Tumor	legacy_call	0.83	1.95	0.0	9.0	0.82		old
+TCGA-02-0021-01	GBM-TCGA-02-0021-Tumor	legacy_call	0.87	2.03	0.0	9.0	0.87		old
+TCGA-02-0023-01	GBM-TCGA-02-0023-Tumor	legacy_call	0.78	1.96	0.0	10.0	0.77		old
+TCGA-02-0024-01	GBM-TCGA-02-0024-Tumor	legacy_call	0.79	3.81	1.0	18.0	0.88		old
+TCGA-02-0025-01	GBM-TCGA-02-0025-Tumor	legacy_call	0.2	4.45	2.0	68.0	0.36		old
+TCGA-02-0026-01	GBM-TCGA-02-0026-Tumor	legacy_call	0.87	1.86	0.0	8.0	0.86		old
+TCGA-02-0027-01	GBM-TCGA-02-0027-Tumor	legacy_call	0.75	1.94	0.0	10.0	0.74		old
+TCGA-02-0028-01	GBM-TCGA-02-0028-Tumor	legacy_call	0.93	2.05	0.0	9.0	0.93		old
+TCGA-02-0034-01	GBM-TCGA-02-0034-Tumor	snp_call	0.52	1.89	0.0	15.0	0.51		old
+TCGA-02-0037-01	GBM-TCGA-02-0037-Tumor	legacy_call	0.83	2.1	0.0	10.0	0.83		old
+TCGA-02-0038-01	GBM-TCGA-02-0038-Tumor	legacy_call	0.78	2.0	0.0	10.0	0.78		old
+TCGA-02-0039-01	GBM-TCGA-02-0039-Tumor	legacy_call	0.61	1.81	0.0	13.0	0.58		old
+TCGA-02-0043-01	GBM-TCGA-02-0043-Tumor	legacy_call	0.94	2.02	0.0	8.0	0.94		old
+TCGA-02-0046-01	GBM-TCGA-02-0046-Tumor	legacy_call	0.89	2.0	0.0	9.0	0.89		old
+TCGA-02-0048-01	GBM-TCGA-02-0048-Tumor	legacy_call	0.88	1.92	0.0	9.0	0.87		old
+TCGA-02-0051-01	GBM-TCGA-02-0051-Tumor	legacy_call	0.75	2.41	1.0	12.0	0.78		old
+TCGA-02-0052-01	GBM-TCGA-02-0052-Tumor	legacy_call	0.52	3.9	1.0	28.0	0.68		old
+TCGA-02-0054-01	GBM-TCGA-02-0054-Tumor	legacy_call	0.53	2.25	0.0	16.0	0.56		old
+TCGA-02-0057-01	GBM-TCGA-02-0057-Tumor	legacy_call	0.39	2.04	0.0	22.0	0.39		old
+TCGA-02-0058-01	GBM-TCGA-02-0058-Tumor	legacy_call	0.82	1.96	0.0	9.0	0.82		old
+TCGA-02-0059-01	GBM-TCGA-02-0059-Tumor	legacy_call	0.67	1.93	0.0	12.0	0.67		old
+TCGA-02-0060-01	GBM-TCGA-02-0060-Tumor	snp_call	0.78	2.0	0.0	10.0	0.78		old
+TCGA-02-0064-01	GBM-TCGA-02-0064-Tumor	legacy_call	0.61	1.97	0.0	13.0	0.6		old
+TCGA-02-0068-01	GBM-TCGA-02-0068-Tumor	legacy_call	0.7	1.94	0.0	11.0	0.69		old
+TCGA-02-0069-01	GBM-TCGA-02-0069-Tumor	legacy_call	0.73	3.31	1.0	17.0	0.82		old
+TCGA-02-0070-01	GBM-TCGA-02-0070-Tumor	legacy_call	0.68	2.08	0.0	12.0	0.69		old
+TCGA-02-0071-01	GBM-TCGA-02-0071-Tumor	legacy_call	0.7	2.01	0.0	12.0	0.7		old
+TCGA-02-0074-01	GBM-TCGA-02-0074-Tumor	legacy_call	0.85	1.99	0.0	9.0	0.85		old
+TCGA-02-0075-01	GBM-TCGA-02-0075-Tumor	legacy_call	0.69	1.93	0.0	11.0	0.68		old
+TCGA-02-0079-01	GBM-TCGA-02-0079-Tumor	snp_call	0.51	1.86	0.0	16.0	0.49		old
+TCGA-02-0080-01	GBM-TCGA-02-0080-Tumor	legacy_call	0.5	4.1	1.0	31.0	0.67		old
+TCGA-02-0083-01	GBM-TCGA-02-0083-Tumor	legacy_call	0.88	1.95	0.0	9.0	0.88		old
+TCGA-02-0084-01	GBM-TCGA-02-0084-Tumor	snp_call	0.72	1.96	0.0	11.0	0.72		old
+TCGA-02-0085-01	GBM-TCGA-02-0085-Tumor	legacy_call	0.45	1.99	0.0	18.0	0.45		old
+TCGA-02-0086-01	GBM-TCGA-02-0086-Tumor	legacy_call	0.55	2.9	1.0	19.0	0.64		old
+TCGA-02-0087-01	GBM-TCGA-02-0087-Tumor	legacy_call	0.72	2.07	0.0	11.0	0.73		old
+TCGA-02-0089-01	GBM-TCGA-02-0089-Tumor	legacy_call	0.69	2.0	0.0	12.0	0.69		old
+TCGA-02-0099-01	GBM-TCGA-02-0099-Tumor	legacy_call	0.72	1.87	0.0	11.0	0.71		old
+TCGA-02-0102-01	GBM-TCGA-02-0102-Tumor	legacy_call	0.89	2.02	0.0	9.0	0.89		old
+TCGA-02-0104-01	GBM-TCGA-02-0104-Tumor	legacy_call	0.88	1.95	0.0	9.0	0.87		old
+TCGA-02-0106-01	GBM-TCGA-02-0106-Tumor	legacy_call	0.77	3.43	1.0	16.0	0.86		old
+TCGA-02-0107-01	GBM-TCGA-02-0107-Tumor	legacy_call	0.18	1.99	0.0	59.0	0.18		old
+TCGA-02-0111-01	GBM-TCGA-02-0111-Tumor	legacy_call	0.48	1.99	0.0	17.0	0.48		old
+TCGA-02-0113-01	GBM-TCGA-02-0113-Tumor	legacy_call	0.72	1.51	0.0	9.0	0.66		old
+TCGA-02-0114-01	GBM-TCGA-02-0114-Tumor	legacy_call	0.95	1.96	0.0	8.0	0.95		old
+TCGA-02-0115-01	GBM-TCGA-02-0115-Tumor	legacy_call	0.58	2.0	0.0	14.0	0.58		old
+TCGA-02-0116-01	GBM-TCGA-02-0116-Tumor	legacy_call	0.91	2.0	0.0	9.0	0.91		old
+TCGA-02-0258-01	GBM-TCGA-02-0258-Tumor	legacy_call	0.93	1.97	0.0	8.0	0.93		old
+TCGA-02-0260-01	GBM-TCGA-02-0260-Tumor	legacy_call	0.92	2.03	0.0	9.0	0.92		old
+TCGA-02-0266-01	GBM-TCGA-02-0266-Tumor	legacy_call	0.84	2.49	1.0	12.0	0.86		old
+TCGA-02-0269-01	GBM-TCGA-02-0269-Tumor	legacy_call	0.93	2.13	0.0	9.0	0.93		old
+TCGA-02-0271-01	GBM-TCGA-02-0271-Tumor	snp_call	0.85	6.62	2.0	36.0	0.95		old
+TCGA-02-0281-01	GBM-TCGA-02-0281-Tumor	legacy_call	0.8	5.69	2.0	31.0	0.92		old
+TCGA-02-0285-01	GBM-TCGA-02-0285-Tumor	snp_call	0.68	2.11	0.0	12.0	0.69		old
+TCGA-02-0290-01	GBM-TCGA-02-0290-Tumor	snp_call	0.75	2.03	0.0	11.0	0.76		old
+TCGA-02-0317-01	GBM-TCGA-02-0317-Tumor	legacy_call	0.9	2.03	0.0	9.0	0.9		old
+TCGA-02-0321-01	GBM-TCGA-02-0321-Tumor	legacy_call	0.46	1.92	0.0	17.0	0.45		old
+TCGA-02-0324-01	GBM-TCGA-02-0324-Tumor	legacy_call	0.81	1.94	0.0	10.0	0.81		old
+TCGA-02-0325-01	GBM-TCGA-02-0325-Tumor	legacy_call	0.49	1.85	0.0	16.0	0.47		old
+TCGA-02-0326-01	GBM-TCGA-02-0326-Tumor	legacy_call	0.52	2.04	0.0	16.0	0.53		old
+TCGA-02-0330-01	GBM-TCGA-02-0330-Tumor	legacy_call	0.6	1.8	0.0	13.0	0.58		old
+TCGA-02-0332-01	GBM-TCGA-02-0332-Tumor	legacy_call	0.88	4.05	1.0	18.0	0.94		old
+TCGA-02-0333-01	GBM-TCGA-02-0333-Tumor	legacy_call	0.93	1.97	0.0	8.0	0.93		old
+TCGA-02-0337-01	GBM-TCGA-02-0337-Tumor	legacy_call	0.51	1.99	0.0	16.0	0.51		old
+TCGA-02-0338-01	GBM-TCGA-02-0338-Tumor	legacy_call	0.35	2.03	0.0	28.0	0.35		old
+TCGA-02-0339-01	GBM-TCGA-02-0339-Tumor	legacy_call	0.95	1.89	0.0	8.0	0.95		old
+TCGA-02-0422-01	GBM-TCGA-02-0422-Tumor	legacy_call	0.82	1.93	0.0	9.0	0.82		old
+TCGA-02-0430-01	GBM-TCGA-02-0430-Tumor	legacy_call	0.88	1.96	0.0	9.0	0.88		old
+TCGA-02-0432-01	GBM-TCGA-02-0432-Tumor	legacy_call	0.88	3.81	1.0	17.0	0.93		old
+TCGA-02-0440-01	GBM-TCGA-02-0440-Tumor	legacy_call	0.88	1.96	0.0	9.0	0.88		old
+TCGA-02-0446-01	GBM-TCGA-02-0446-Tumor	legacy_call	0.66	1.96	0.0	12.0	0.65		old
+TCGA-02-0451-01	GBM-TCGA-02-0451-Tumor	legacy_call	0.66	2.03	0.0	12.0	0.67		old
+TCGA-02-0456-01	GBM-TCGA-02-0456-Tumor	legacy_call	0.45	1.89	0.0	18.0	0.43		old
+TCGA-04-1332-01	OV-TCGA-04-1332-Tumor	legacy_call	0.5	2.76	1.0	20.0	0.58		old
+TCGA-04-1337-01	OV-TCGA-04-1337-Tumor	legacy_call	0.5	3.26	1.0	24.0	0.62		old
+TCGA-04-1338-01	OV-TCGA-04-1338-Tumor	legacy_call	0.74	2.99	1.0	15.0	0.81		old
+TCGA-04-1350-01	OV-TCGA-04-1350-Tumor	legacy_call	0.99	3.04	1.0	12.0	0.99		old
+TCGA-04-1351-01	OV-TCGA-04-1351-Tumor	legacy_call	0.72	4.37	2.0	21.0	0.85		old
+TCGA-04-1364-01	OV-TCGA-04-1364-Tumor	legacy_call	0.9	5.58	2.0	29.0	0.96		old
+TCGA-04-1365-01	OV-TCGA-04-1365-Tumor	legacy_call	0.82	1.89	0.0	9.0	0.81		old
+TCGA-04-1514-01	OV-TCGA-04-1514-Tumor	legacy_call	0.93	2.88	1.0	12.0	0.95		old
+TCGA-04-1517-01	OV-TCGA-04-1517-Tumor	legacy_call	0.83	6.95	2.0	39.0	0.94		old
+TCGA-04-1519-01	OV-TCGA-04-1519-Tumor	legacy_call	0.99	1.72	0.0	7.0	0.99		old
+TCGA-04-1525-01	OV-TCGA-04-1525-Tumor	legacy_call	0.77	3.3	1.0	16.0	0.85		old
+TCGA-04-1530-01	OV-TCGA-04-1530-Tumor	legacy_call	0.42	4.8	2.0	40.0	0.64		old
+TCGA-04-1536-01	OV-TCGA-04-1536-Tumor	legacy_call	0.76	2.95	1.0	15.0	0.82		old
+TCGA-04-1654-01	OV-TCGA-04-1654-Tumor	legacy_call	0.88	1.94	0.0	9.0	0.88		old
+TCGA-05-5420-01	LUAD-TCGA-05-5420-Tumor-SM-1WKQW	maf_call	0.25	1.82	0.0	42.0	0.23		old
+TCGA-06-0127-01	GBM-TCGA-06-0127-Tumor	snp_call	0.63	1.99	0.0	13.0	0.63		old
+TCGA-06-0133-01	GBM-TCGA-06-0133-Tumor	legacy_call	0.56	2.21	0.0	16.0	0.58		old
+TCGA-06-0143-01	GBM-TCGA-06-0143-Tumor	legacy_call	0.63	1.98	0.0	13.0	0.63		old
+TCGA-06-0148-01	GBM-TCGA-06-0148-Tumor	legacy_call	1.0	2.03	0.0	8.0	1.0		old
+TCGA-06-0149-01	GBM-TCGA-06-0149-Tumor	legacy_call	0.73	2.06	0.0	11.0	0.73		old
+TCGA-06-0159-01	GBM-TCGA-06-0159-Tumor	snp_call	0.62	1.83	0.0	12.0	0.6		old
+TCGA-06-0162-01	GBM-TCGA-06-0162-Tumor	legacy_call	0.67	1.85	0.0	11.0	0.66		old
+TCGA-06-0164-01	GBM-TCGA-06-0164-Tumor	legacy_call	0.58	1.95	0.0	14.0	0.57		old
+TCGA-06-0175-01	GBM-TCGA-06-0175-Tumor	legacy_call	0.73	2.02	0.0	11.0	0.73		old
+TCGA-06-0177-01	GBM-TCGA-06-0177-Tumor	legacy_call	0.82	3.43	1.0	16.0	0.89		old
+TCGA-06-0179-01	GBM-TCGA-06-0179-Tumor	legacy_call	0.38	2.05	0.0	24.0	0.39		old
+TCGA-06-0182-01	GBM-TCGA-06-0182-Tumor	legacy_call	0.9	2.14	0.0	9.0	0.91		old
+TCGA-06-0194-01	GBM-TCGA-06-0194-Tumor	legacy_call	0.52	1.97	0.0	15.0	0.52		old
+TCGA-06-0197-01	GBM-TCGA-06-0197-Tumor	legacy_call	0.58	1.89	0.0	13.0	0.57		old
+TCGA-06-0201-01	GBM-TCGA-06-0201-Tumor	legacy_call	0.46	1.98	0.0	18.0	0.46		old
+TCGA-06-0206-01	GBM-TCGA-06-0206-Tumor	legacy_call	0.62	2.05	0.0	13.0	0.63		old
+TCGA-06-0208-01	GBM-TCGA-06-0208-Tumor	legacy_call	0.73	1.98	0.0	11.0	0.73		old
+TCGA-06-0209-01	GBM-TCGA-06-0209-Tumor-SM-1QUO5	maf_call	1.0	4.04	1.0	17.0	1.0		old
+TCGA-06-0394-01	GBM-TCGA-06-0394-Tumor	legacy_call	0.6	2.02	0.0	14.0	0.6		old
+TCGA-06-0397-01	GBM-TCGA-06-0397-Tumor	legacy_call	0.78	2.11	0.0	11.0	0.79		old
+TCGA-06-0402-01	GBM-TCGA-06-0402-Tumor	legacy_call	0.94	2.05	0.0	9.0	0.94		old
+TCGA-06-0409-01	GBM-TCGA-06-0409-Tumor	legacy_call	0.37	3.54	1.0	36.0	0.51		old
+TCGA-06-0410-01	GBM-TCGA-06-0410-Tumor	legacy_call	0.88	3.3	1.0	15.0	0.92		old
+TCGA-06-0412-01	GBM-TCGA-06-0412-Tumor	legacy_call	0.75	2.01	0.0	11.0	0.75		old
+TCGA-06-0413-01	GBM-TCGA-06-0413-Tumor	legacy_call	0.87	2.16	0.0	10.0	0.88		old
+TCGA-06-0414-01	GBM-TCGA-06-0414-Tumor	legacy_call	0.75	3.4	1.0	17.0	0.84		old
+TCGA-06-1086-01	GBM-TCGA-06-1086-Tumor	legacy_call	0.89	3.24	1.0	14.0	0.93		old
+TCGA-06-5416-01	GBM-TCGA-06-5416-Tumor-SM-1QETM	maf_call	0.79	3.76	1.0	18.0	0.87		old
+TCGA-06-6391-01	GBM-TCGA-06-6391-Tumor-SM-1Y494	maf_call	0.39	2.19	0.0	25.0	0.41		old
+TCGA-08-0244-01	GBM-TCGA-08-0244-Tumor	legacy_call	0.81	1.99	0.0	10.0	0.81		old
+TCGA-08-0245-01	GBM-TCGA-08-0245-Tumor	legacy_call	0.89	1.8	0.0	8.0	0.88		old
+TCGA-08-0246-01	GBM-TCGA-08-0246-Tumor	legacy_call	0.7	2.79	1.0	15.0	0.76		old
+TCGA-08-0344-01	GBM-TCGA-08-0344-Tumor	legacy_call	0.94	1.94	0.0	8.0	0.94		old
+TCGA-08-0345-01	GBM-TCGA-08-0345-Tumor	snp_call	0.62	2.07	0.0	13.0	0.63		old
+TCGA-08-0346-01	GBM-TCGA-08-0346-Tumor	legacy_call	0.61	2.16	0.0	14.0	0.63		old
+TCGA-08-0347-01	GBM-TCGA-08-0347-Tumor	legacy_call	0.7	1.96	0.0	11.0	0.69		old
+TCGA-08-0348-01	GBM-TCGA-08-0348-Tumor	legacy_call	0.77	1.93	0.0	10.0	0.77		old
+TCGA-08-0349-01	GBM-TCGA-08-0349-Tumor	snp_call	0.8	1.94	0.0	10.0	0.79		old
+TCGA-08-0350-01	GBM-TCGA-08-0350-Tumor	legacy_call	0.84	2.17	0.0	10.0	0.85		old
+TCGA-08-0351-01	GBM-TCGA-08-0351-Tumor	legacy_call	0.71	2.04	0.0	12.0	0.71		old
+TCGA-08-0352-01	GBM-TCGA-08-0352-Tumor	snp_call	0.6	2.1	0.0	14.0	0.61		old
+TCGA-08-0353-01	GBM-TCGA-08-0353-Tumor	legacy_call	0.85	1.99	0.0	9.0	0.85		old
+TCGA-08-0354-01	GBM-TCGA-08-0354-Tumor	legacy_call	0.76	2.0	0.0	10.0	0.76		old
+TCGA-08-0355-01	GBM-TCGA-08-0355-Tumor	legacy_call	0.81	1.99	0.0	10.0	0.81		old
+TCGA-08-0356-01	GBM-TCGA-08-0356-Tumor	legacy_call	0.69	2.04	0.0	12.0	0.69		old
+TCGA-08-0357-01	GBM-TCGA-08-0357-Tumor	legacy_call	0.75	2.01	0.0	11.0	0.75		old
+TCGA-08-0358-01	GBM-TCGA-08-0358-Tumor	snp_call	0.95	1.97	0.0	8.0	0.95		old
+TCGA-08-0359-01	GBM-TCGA-08-0359-Tumor	legacy_call	0.73	1.92	0.0	11.0	0.73		old
+TCGA-08-0375-01	GBM-TCGA-08-0375-Tumor	legacy_call	0.89	1.99	0.0	9.0	0.89		old
+TCGA-08-0380-01	GBM-TCGA-08-0380-Tumor	legacy_call	0.33	1.99	0.0	30.0	0.33		old
+TCGA-08-0389-01	GBM-TCGA-08-0389-Tumor	legacy_call	0.88	1.96	0.0	9.0	0.87		old
+TCGA-08-0390-01	GBM-TCGA-08-0390-Tumor	legacy_call	0.5	1.96	0.0	16.0	0.49		old
+TCGA-08-0392-01	GBM-TCGA-08-0392-Tumor	legacy_call	0.82	1.98	0.0	10.0	0.82		old
+TCGA-08-0509-01	GBM-TCGA-08-0509-Tumor	legacy_call	0.47	1.98	0.0	17.0	0.47		old
+TCGA-08-0510-01	GBM-TCGA-08-0510-Tumor	legacy_call	0.52	3.58	1.0	26.0	0.66		old
+TCGA-08-0512-01	GBM-TCGA-08-0512-Tumor	legacy_call	0.46	1.8	0.0	17.0	0.43		old
+TCGA-08-0514-01	GBM-TCGA-08-0514-Tumor	legacy_call	0.85	1.96	0.0	9.0	0.84		old
+TCGA-08-0516-01	GBM-TCGA-08-0516-Tumor	legacy_call	0.94	1.96	0.0	8.0	0.94		old
+TCGA-08-0517-01	GBM-TCGA-08-0517-Tumor	legacy_call	0.93	1.88	0.0	8.0	0.93		old
+TCGA-08-0518-01	GBM-TCGA-08-0518-Tumor	legacy_call	0.95	2.08	0.0	9.0	0.95		old
+TCGA-08-0520-01	GBM-TCGA-08-0520-Tumor	legacy_call	0.81	1.88	0.0	9.0	0.8		old
+TCGA-08-0521-01	GBM-TCGA-08-0521-Tumor	legacy_call	0.89	2.0	0.0	9.0	0.89		old
+TCGA-08-0524-01	GBM-TCGA-08-0524-Tumor	legacy_call	0.95	2.11	0.0	9.0	0.95		old
+TCGA-08-0525-01	GBM-TCGA-08-0525-Tumor	legacy_call	0.84	1.88	0.0	9.0	0.84		old
+TCGA-08-0529-01	GBM-TCGA-08-0529-Tumor	legacy_call	0.87	2.09	0.0	9.0	0.88		old
+TCGA-08-0531-01	GBM-TCGA-08-0531-Tumor	legacy_call	0.88	2.04	0.0	9.0	0.88		old
+TCGA-09-0366-01	OV-TCGA-09-0366-Tumor	legacy_call	0.68	2.87	1.0	16.0	0.75		old
+TCGA-09-0367-01	OV-TCGA-09-0367-Tumor	legacy_call	0.72	6.18	2.0	36.0	0.89		old
+TCGA-09-1659-01	OV-TCGA-09-1659-Tumor	legacy_call	0.87	2.56	1.0	11.0	0.9		old
+TCGA-09-1661-01	OV-TCGA-09-1661-Tumor	legacy_call	0.84	4.03	2.0	18.0	0.91		old
+TCGA-09-1662-01	OV-TCGA-09-1662-Tumor	legacy_call	0.85	1.93	0.0	9.0	0.85		old
+TCGA-09-1665-01	OV-TCGA-09-1665-Tumor	legacy_call	0.88	2.58	1.0	11.0	0.91		old
+TCGA-09-1666-01	OV-TCGA-09-1666-Tumor	legacy_call	0.93	1.78	0.0	7.0	0.92		old
+TCGA-09-1667-01	OV-TCGA-09-1667-Tumor	legacy_call	0.75	3.69	1.0	18.0	0.85		old
+TCGA-09-1668-01	OV-TCGA-09-1668-Tumor	legacy_call	0.74	3.34	1.0	17.0	0.83		old
+TCGA-09-1669-01	OV-TCGA-09-1669-Tumor	legacy_call	0.9	2.0	0.0	9.0	0.9		old
+TCGA-09-1672-01	OV-TCGA-09-1672-Tumor	legacy_call	0.68	3.26	1.0	17.0	0.77		old
+TCGA-09-2045-01	OV-TCGA-09-2045-Tumor	legacy_call	0.92	2.05	0.0	9.0	0.92		old
+TCGA-09-2048-01	OV-TCGA-09-2048-Tumor	legacy_call	0.99	2.1	1.0	8.0	0.99		old
+TCGA-09-2054-01	OV-TCGA-09-2054-Tumor	legacy_call	0.87	2.91	1.0	13.0	0.91		old
+TCGA-09-2056-01	OV-TCGA-09-2056-Tumor	legacy_call	0.89	1.77	0.0	8.0	0.88		old
+TCGA-10-0925-01	OV-TCGA-10-0925-Tumor	legacy_call	0.9	1.9	0.0	8.0	0.9		old
+TCGA-10-0936-01	OV-TCGA-10-0936-Tumor	legacy_call	0.89	3.76	1.0	17.0	0.94		old
+TCGA-10-0938-01	OV-TCGA-10-0938-Tumor	legacy_call	0.96	3.84	2.0	16.0	0.98		old
+TCGA-12-0620-01	GBM-TCGA-12-0620-Tumor	snp_call	0.7	1.94	0.0	11.0	0.69		old
+TCGA-12-0654-01	GBM-TCGA-12-0654-Tumor	legacy_call	0.65	1.99	0.0	12.0	0.65		old
+TCGA-12-0703-01	GBM-TCGA-12-0703-Tumor	legacy_call	0.74	2.04	0.0	11.0	0.75		old
+TCGA-12-0769-01	GBM-TCGA-12-0769-Tumor	legacy_call	0.89	1.99	0.0	9.0	0.88		old
+TCGA-12-0776-01	GBM-TCGA-12-0776-Tumor	legacy_call	0.5	1.87	0.0	16.0	0.48		old
+TCGA-12-0780-01	GBM-TCGA-12-0780-Tumor	legacy_call	0.82	2.01	0.0	10.0	0.83		old
+TCGA-12-1090-01	GBM-TCGA-12-1090-Tumor	legacy_call	0.9	2.17	1.0	9.0	0.91		old
+TCGA-12-1091-01	GBM-TCGA-12-1091-Tumor	legacy_call	0.93	1.85	0.0	8.0	0.92		old
+TCGA-12-1094-01	GBM-TCGA-12-1094-Tumor	legacy_call	0.78	2.0	0.0	10.0	0.78		old
+TCGA-12-1095-01	GBM-TCGA-12-1095-Tumor	legacy_call	0.64	1.95	0.0	12.0	0.63		old
+TCGA-12-1096-01	GBM-TCGA-12-1096-Tumor	legacy_call	0.48	2.04	0.0	17.0	0.49		old
+TCGA-12-1097-01	GBM-TCGA-12-1097-Tumor	legacy_call	0.78	1.92	0.0	10.0	0.77		old
+TCGA-12-1098-01	GBM-TCGA-12-1098-Tumor	legacy_call	0.85	2.1	0.0	10.0	0.86		old
+TCGA-12-1099-01	GBM-TCGA-12-1099-Tumor	snp_call	0.77	3.86	1.0	18.0	0.87		old
+TCGA-13-0720-01	OV-TCGA-13-0720-Tumor	legacy_call	0.92	1.82	0.0	8.0	0.92		old
+TCGA-13-0723-01	OV-TCGA-13-0723-Tumor	legacy_call	0.69	3.1	1.0	16.0	0.77		old
+TCGA-13-0724-01	OV-TCGA-13-0724-Tumor	legacy_call	0.85	2.68	1.0	12.0	0.88		old
+TCGA-13-0725-01	OV-TCGA-13-0725-Tumor	legacy_call	0.79	1.87	0.0	9.0	0.78		old
+TCGA-13-0727-01	OV-TCGA-13-0727-Tumor	legacy_call	0.86	3.34	1.0	15.0	0.91		old
+TCGA-13-0730-01	OV-TCGA-13-0730-Tumor	legacy_call	0.87	3.07	1.0	14.0	0.91		old
+TCGA-13-0758-01	OV-TCGA-13-0758-Tumor	legacy_call	0.63	3.46	1.0	19.0	0.75		old
+TCGA-13-0761-01	OV-TCGA-13-0761-Tumor	legacy_call	0.73	3.87	1.0	19.0	0.84		old
+TCGA-13-0762-01	OV-TCGA-13-0762-Tumor	legacy_call	0.78	4.8	2.0	25.0	0.89		old
+TCGA-13-0766-01	OV-TCGA-13-0766-Tumor	legacy_call	0.75	1.87	0.0	10.0	0.74		old
+TCGA-13-0792-01	OV-TCGA-13-0792-Tumor	legacy_call	0.81	2.84	1.0	13.0	0.86		old
+TCGA-13-0793-01	OV-TCGA-13-0793-Tumor	legacy_call	0.71	1.69	0.0	10.0	0.68		old
+TCGA-13-0797-01	OV-TCGA-13-0797-Tumor	legacy_call	0.89	1.91	0.0	8.0	0.88		old
+TCGA-13-0799-01	OV-TCGA-13-0799-Tumor	legacy_call	0.94	1.91	0.0	8.0	0.93		old
+TCGA-13-0801-01	OV-TCGA-13-0801-Tumor	legacy_call	0.86	1.78	0.0	8.0	0.85		old
+TCGA-13-0802-01	OV-TCGA-13-0802-Tumor	legacy_call	0.91	3.24	1.0	14.0	0.94		old
+TCGA-13-0803-01	OV-TCGA-13-0803-Tumor	legacy_call	0.78	3.61	1.0	17.0	0.86		old
+TCGA-13-0900-01	OV-TCGA-13-0900-Tumor	legacy_call	0.8	1.82	0.0	9.0	0.79		old
+TCGA-13-0901-01	OV-TCGA-13-0901-Tumor	legacy_call	0.78	3.32	1.0	16.0	0.85		old
+TCGA-13-0906-01	OV-TCGA-13-0906-Tumor	legacy_call	0.88	1.87	0.0	8.0	0.87		old
+TCGA-13-0908-01	OV-TCGA-13-0908-Tumor	legacy_call	0.66	2.04	0.0	12.0	0.67		old
+TCGA-13-0919-01	OV-TCGA-13-0919-Tumor	legacy_call	0.51	3.45	1.0	25.0	0.64		old
+TCGA-13-0924-01	OV-TCGA-13-0924-Tumor	legacy_call	0.63	1.81	0.0	12.0	0.6		old
+TCGA-13-1407-01	OV-TCGA-13-1407-Tumor	legacy_call	0.97	3.21	1.0	13.0	0.98		old
+TCGA-13-1408-01	OV-TCGA-13-1408-Tumor	legacy_call	0.42	3.98	2.0	35.0	0.59		old
+TCGA-13-1409-01	OV-TCGA-13-1409-Tumor	legacy_call	0.93	3.72	2.0	16.0	0.96		old
+TCGA-13-1410-01	OV-TCGA-13-1410-Tumor	legacy_call	0.81	3.65	2.0	17.0	0.89		old
+TCGA-13-1485-01	OV-TCGA-13-1485-Tumor	legacy_call	0.71	2.29	0.0	13.0	0.73		old
+TCGA-13-1817-01	OV-TCGA-13-1817-Tumor	snp_call	0.69	1.64	0.0	10.0	0.64		old
+TCGA-13-1819-01	OV-TCGA-13-1819-Tumor	snp_call	0.9	1.96	0.0	9.0	0.9		old
+TCGA-14-0783-01	GBM-TCGA-14-0783-Tumor	legacy_call	0.68	5.96	2.0	36.0	0.86		old
+TCGA-14-1401-01	GBM-TCGA-14-1401-Tumor	legacy_call	0.65	2.0	0.0	12.0	0.65		old
+TCGA-14-1402-01	GBM-TCGA-14-1402-Tumor-SM-325IB	legacy_call	0.79	2.0	0.0	10.0	0.79		old
+TCGA-14-1452-01	GBM-TCGA-14-1452-Tumor	legacy_call	0.74	2.08	0.0	11.0	0.75		old
+TCGA-14-1454-01	GBM-TCGA-14-1454-Tumor	snp_call	0.95	3.03	1.0	13.0	0.97		old
+TCGA-14-1459-01	GBM-TCGA-14-1459-Tumor	legacy_call	0.88	1.99	0.0	9.0	0.88		old
+TCGA-14-2555-01	GBM-TCGA-14-2555-Tumor-SM-17P2J	legacy_call	0.97	2.05	0.0	8.0	0.97		old
+TCGA-15-1447-01	GBM-TCGA-15-1447-Tumor	legacy_call	0.86	2.71	1.0	12.0	0.9		old
+TCGA-15-1449-01	GBM-TCGA-15-1449-Tumor	snp_call	0.47	5.56	2.0	41.0	0.71		old
+TCGA-16-1047-01	GBM-TCGA-16-1047-Tumor	legacy_call	0.91	1.93	0.0	8.0	0.91		old
+TCGA-16-1055-01	GBM-TCGA-16-1055-Tumor	legacy_call	0.71	2.03	0.0	11.0	0.71		old
+TCGA-16-1056-01	GBM-TCGA-16-1056-Tumor	legacy_call	0.78	1.93	0.0	10.0	0.77		old
+TCGA-16-1060-01	GBM-TCGA-16-1060-Tumor	legacy_call	0.71	1.92	0.0	11.0	0.7		old
+TCGA-16-1062-01	GBM-TCGA-16-1062-Tumor	legacy_call	0.88	2.03	0.0	9.0	0.88		old
+TCGA-16-1063-01	GBM-TCGA-16-1063-Tumor	legacy_call	0.85	1.96	0.0	9.0	0.84		old
+TCGA-18-3409-01	LUSC-TCGA-18-3409-Tumor-SM-1AHA2	maf_call	0.54	3.57	1.0	24.0	0.68		old
+TCGA-18-3419-01	LUSC-TCGA-18-3419-Tumor-SM-1AH9R	maf_call	0.57	2.02	0.0	14.0	0.57		old
+TCGA-18-4086-01	LUSC-TCGA-18-4086-Tumor-SM-1N6JJ	maf_call	0.6	1.91	0.0	13.0	0.58		old
+TCGA-18-5595-01	LUSC-TCGA-18-5595-Tumor-SM-1WL74	maf_call	0.86	2.09	0.0	10.0	0.87		old
+TCGA-19-0955-01	GBM-TCGA-19-0955-Tumor	legacy_call	0.52	2.11	0.0	16.0	0.53		old
+TCGA-19-0960-01	GBM-TCGA-19-0960-Tumor	legacy_call	0.93	1.99	0.0	8.0	0.93		old
+TCGA-19-0962-01	GBM-TCGA-19-0962-Tumor	legacy_call	0.77	1.94	0.0	10.0	0.76		old
+TCGA-19-0963-01	GBM-TCGA-19-0963-Tumor	legacy_call	0.72	1.97	0.0	11.0	0.71		old
+TCGA-19-0964-01	GBM-TCGA-19-0964-Tumor	legacy_call	0.93	1.93	0.0	8.0	0.93		old
+TCGA-19-1392-01	GBM-TCGA-19-1392-Tumor	legacy_call	1.0	3.76	1.0	15.0	1.0		old
+TCGA-20-0990-01	OV-TCGA-20-0990-Tumor	legacy_call	0.88	3.0	1.0	13.0	0.91		old
+TCGA-21-1070-01	LUSC-TCGA-21-1070-Tumor-SM-13JYJ	maf_call	0.5	1.63	0.0	15.0	0.45		old
+TCGA-21-1072-01	LUSC-TCGA-21-1072-Tumor	snp_call	0.74	3.38	1.0	17.0	0.82		old
+TCGA-21-1077-01	LUSC-TCGA-21-1077-Tumor-SM-13JYD	maf_call	0.34	2.64	1.0	33.0	0.41		old
+TCGA-21-1078-01	LUSC-TCGA-21-1078-Tumor-SM-13JYK	maf_call	0.92	2.0	0.0	9.0	0.92		old
+TCGA-21-1079-01	LUSC-TCGA-21-1079-Tumor	snp_call	0.6	3.41	1.0	20.0	0.72		old
+TCGA-21-1083-01	LUSC-TCGA-21-1083-Tumor-SM-13JZI	maf_call	0.58	3.22	1.0	19.0	0.69		old
+TCGA-21-A5DI-01	LUSC-TCGA-21-A5DI-Tumor-SM-47KGM	maf_call	0.3	3.15	1.0	42.0	0.4		old
+TCGA-22-1017-01	LUSC-TCGA-22-1017-Tumor	snp_call	0.34	3.33	1.0	37.0	0.47		old
+TCGA-23-1023-01	OV-TCGA-23-1023-Tumor	legacy_call	0.62	2.01	0.0	13.0	0.62		old
+TCGA-23-1024-01	OV-TCGA-23-1024-Tumor	legacy_call	0.75	3.33	1.0	16.0	0.83		old
+TCGA-23-1026-01	OV-TCGA-23-1026-Tumor	snp_call	0.77	2.05	0.0	11.0	0.78		old
+TCGA-23-1028-01	OV-TCGA-23-1028-Tumor	legacy_call	0.82	1.74	0.0	9.0	0.8		old
+TCGA-23-1031-01	OV-TCGA-23-1031-Tumor	legacy_call	0.52	3.3	1.0	21.0	0.64		old
+TCGA-23-1109-01	OV-TCGA-23-1109-Tumor	legacy_call	0.91	3.08	1.0	13.0	0.94		old
+TCGA-23-1119-01	OV-TCGA-23-1119-Tumor	legacy_call	0.35	8.01	2.0	63.0	0.69		old
+TCGA-23-1120-01	OV-TCGA-23-1120-Tumor	legacy_call	0.92	1.88	0.0	8.0	0.91		old
+TCGA-24-0966-01	OV-TCGA-24-0966-Tumor	legacy_call	0.95	1.93	0.0	8.0	0.94		old
+TCGA-24-0968-01	OV-TCGA-24-0968-Tumor	legacy_call	0.37	6.95	2.0	56.0	0.67		old
+TCGA-24-0975-01	OV-TCGA-24-0975-Tumor	legacy_call	0.42	1.82	0.0	19.0	0.4		old
+TCGA-24-0979-01	OV-TCGA-24-0979-Tumor	legacy_call	0.75	2.98	1.0	15.0	0.82		old
+TCGA-24-1105-01	OV-TCGA-24-1105-Tumor	legacy_call	0.75	3.51	1.0	17.0	0.84		old
+TCGA-24-1544-01	OV-TCGA-24-1544-Tumor	legacy_call	0.93	3.05	1.0	13.0	0.95		old
+TCGA-24-1545-01	OV-TCGA-24-1545-Tumor	legacy_call	0.52	2.83	1.0	19.0	0.61		old
+TCGA-24-1546-01	OV-TCGA-24-1546-Tumor	legacy_call	0.63	1.79	0.0	12.0	0.61		old
+TCGA-24-1548-01	OV-TCGA-24-1548-Tumor	legacy_call	0.88	2.84	1.0	13.0	0.91		old
+TCGA-24-1553-01	OV-TCGA-24-1553-Tumor	legacy_call	0.67	2.29	1.0	13.0	0.7		old
+TCGA-24-1555-01	OV-TCGA-24-1555-Tumor	legacy_call	0.94	1.98	0.0	8.0	0.94		old
+TCGA-24-1556-01	OV-TCGA-24-1556-Tumor	legacy_call	0.82	3.38	1.0	16.0	0.89		old
+TCGA-24-1557-01	OV-TCGA-24-1557-Tumor	legacy_call	0.91	3.24	1.0	14.0	0.94		old
+TCGA-24-1558-01	OV-TCGA-24-1558-Tumor	legacy_call	0.91	3.26	1.0	14.0	0.94		old
+TCGA-24-1567-01	OV-TCGA-24-1567-Tumor	legacy_call	0.94	1.71	0.0	7.0	0.93		old
+TCGA-24-1604-01	OV-TCGA-24-1604-Tumor	legacy_call	0.82	3.37	1.0	16.0	0.88		old
+TCGA-24-1614-01	OV-TCGA-24-1614-Tumor	legacy_call	0.91	3.35	1.0	15.0	0.94		old
+TCGA-24-1852-01	OV-TCGA-24-1852-Tumor	legacy_call	0.84	4.12	2.0	19.0	0.91		old
+TCGA-24-1923-01	OV-TCGA-24-1923-Tumor	legacy_call	0.37	3.28	1.0	34.0	0.49		old
+TCGA-24-1928-01	OV-TCGA-24-1928-Tumor	legacy_call	0.66	3.56	1.0	19.0	0.77		old
+TCGA-24-1930-01	OV-TCGA-24-1930-Tumor	legacy_call	0.66	2.97	1.0	16.0	0.74		old
+TCGA-24-2020-01	OV-TCGA-24-2020-Tumor	legacy_call	0.95	5.0	2.0	21.0	0.98		old
+TCGA-24-2023-01	OV-TCGA-24-2023-Tumor	legacy_call	0.92	1.82	0.0	8.0	0.91		old
+TCGA-24-2026-01	OV-TCGA-24-2026-Tumor	legacy_call	0.76	5.1	2.0	28.0	0.89		old
+TCGA-24-2027-01	OV-TCGA-24-2027-Tumor	legacy_call	0.9	1.85	0.0	8.0	0.9		old
+TCGA-24-2029-01	OV-TCGA-24-2029-Tumor	legacy_call	0.62	1.85	0.0	13.0	0.6		old
+TCGA-24-2036-01	OV-TCGA-24-2036-Tumor	legacy_call	0.94	1.91	0.0	8.0	0.93		old
+TCGA-24-2297-01	OV-TCGA-24-2297-Tumor	legacy_call	0.99	1.94	0.0	8.0	0.99		old
+TCGA-25-1316-01	OV-TCGA-25-1316-Tumor	legacy_call	1.0	2.72	1.0	11.0	1.0		old
+TCGA-25-1317-01	OV-TCGA-25-1317-Tumor	legacy_call	0.77	3.08	1.0	15.0	0.84		old
+TCGA-25-1318-01	OV-TCGA-25-1318-Tumor	legacy_call	0.57	7.33	2.0	47.0	0.83		old
+TCGA-25-1321-01	OV-TCGA-25-1321-Tumor	legacy_call	0.8	4.6	2.0	21.0	0.9		old
+TCGA-25-1623-01	OV-TCGA-25-1623-Tumor	legacy_call	0.38	2.44	1.0	28.0	0.42		old
+TCGA-25-1625-01	OV-TCGA-25-1625-Tumor	legacy_call	0.62	2.0	0.0	13.0	0.62		old
+TCGA-25-1626-01	OV-TCGA-25-1626-Tumor	legacy_call	0.32	2.61	1.0	35.0	0.38		old
+TCGA-25-1627-01	OV-TCGA-25-1627-Tumor	legacy_call	0.89	2.46	1.0	11.0	0.91		old
+TCGA-25-1628-01	OV-TCGA-25-1628-Tumor	legacy_call	0.62	2.57	1.0	16.0	0.67		old
+TCGA-25-1630-01	OV-TCGA-25-1630-Tumor	legacy_call	0.48	3.77	1.0	30.0	0.63		old
+TCGA-25-1631-01	OV-TCGA-25-1631-Tumor	snp_call	0.9	1.89	0.0	8.0	0.9		old
+TCGA-25-1632-01	OV-TCGA-25-1632-Tumor	legacy_call	0.97	3.57	1.0	15.0	0.98		old
+TCGA-25-1633-01	OV-TCGA-25-1633-Tumor	legacy_call	0.63	2.59	1.0	16.0	0.68		old
+TCGA-25-1634-01	OV-TCGA-25-1634-Tumor	legacy_call	0.85	4.05	2.0	18.0	0.92		old
+TCGA-25-1635-01	OV-TCGA-25-1635-Tumor	legacy_call	0.69	2.72	1.0	15.0	0.76		old
+TCGA-25-1870-01	OV-TCGA-25-1870-Tumor	legacy_call	0.86	5.15	2.0	26.0	0.94		old
+TCGA-25-1871-01	OV-TCGA-25-1871-Tumor	legacy_call	0.98	4.86	2.0	20.0	0.99		old
+TCGA-25-1877-01	OV-TCGA-25-1877-Tumor	legacy_call	0.96	2.68	1.0	11.0	0.97		old
+TCGA-25-1878-01	OV-TCGA-25-1878-Tumor	legacy_call	0.56	3.62	2.0	21.0	0.7		old
+TCGA-25-2408-01	OV-TCGA-25-2408-Tumor	legacy_call	0.79	1.98	0.0	10.0	0.78		old
+TCGA-25-2409-01	OV-TCGA-25-2409-Tumor	legacy_call	0.72	3.79	1.0	19.0	0.83		old
+TCGA-26-1438-01	GBM-TCGA-26-1438-Tumor	legacy_call	0.46	2.0	0.0	18.0	0.46		old
+TCGA-26-1440-01	GBM-TCGA-26-1440-Tumor	legacy_call	0.77	2.11	0.0	11.0	0.78		old
+TCGA-26-1443-01	GBM-TCGA-26-1443-Tumor	legacy_call	0.9	2.04	0.0	9.0	0.9		old
+TCGA-28-1756-01	GBM-TCGA-28-1756-Tumor	legacy_call	0.78	1.89	0.0	10.0	0.77		old
+TCGA-29-1692-01	OV-TCGA-29-1692-Tumor	snp_call	0.53	2.84	1.0	19.0	0.61		old
+TCGA-29-1704-01	OV-TCGA-29-1704-Tumor	legacy_call	0.74	1.97	0.0	11.0	0.74		old
+TCGA-29-2414-01	OV-TCGA-29-2414-Tumor	snp_call	0.86	2.99	1.0	13.0	0.9		old
+TCGA-29-2425-01	OV-TCGA-29-2425-Tumor	legacy_call	0.9	3.57	1.0	16.0	0.94		old
+TCGA-29-2428-01	OV-TCGA-29-2428-Tumor	legacy_call	0.78	3.17	1.0	15.0	0.85		old
+TCGA-30-1859-01	OV-TCGA-30-1859-Tumor	legacy_call	0.97	3.07	1.0	13.0	0.98		old
+TCGA-30-1860-01	OV-TCGA-30-1860-Tumor	legacy_call	0.79	1.75	0.0	9.0	0.77		old
+TCGA-30-1861-01	OV-TCGA-30-1861-Tumor	legacy_call	0.72	2.86	1.0	15.0	0.79		old
+TCGA-30-1866-01	OV-TCGA-30-1866-Tumor	legacy_call	0.85	3.59	1.0	16.0	0.91		old
+TCGA-30-1867-01	OV-TCGA-30-1867-Tumor	legacy_call	0.51	3.39	1.0	24.0	0.64		old
+TCGA-30-1880-01	OV-TCGA-30-1880-Tumor	legacy_call	0.89	1.8	0.0	8.0	0.88		old
+TCGA-30-1887-01	OV-TCGA-30-1887-Tumor	legacy_call	0.5	3.01	1.0	21.0	0.6		old
+TCGA-30-1892-01	OV-TCGA-30-1892-Tumor	legacy_call	0.64	3.22	1.0	18.0	0.74		old
+TCGA-31-1944-01	OV-TCGA-31-1944-Tumor	legacy_call	0.79	1.93	0.0	10.0	0.79		old
+TCGA-31-1946-01	OV-TCGA-31-1946-Tumor	legacy_call	0.7	2.04	0.0	12.0	0.7		old
+TCGA-31-1951-01	OV-TCGA-31-1951-Tumor	legacy_call	0.8	1.97	0.0	10.0	0.79		old
+TCGA-31-1955-01	OV-TCGA-31-1955-Tumor	legacy_call	0.78	1.84	0.0	10.0	0.76		old
+TCGA-31-1956-01	OV-TCGA-31-1956-Tumor	legacy_call	0.69	1.88	0.0	11.0	0.67		old
+TCGA-32-1973-01	GBM-TCGA-32-1973-Tumor	legacy_call	0.88	1.86	0.0	8.0	0.88		old
+TCGA-32-1978-01	GBM-TCGA-32-1978-Tumor	legacy_call	0.99	1.99	1.0	8.0	0.99		old
+TCGA-32-1987-01	GBM-TCGA-32-1987-Tumor	legacy_call	0.98	4.01	1.0	17.0	0.99		old
+TCGA-33-6737-01	LUSC-TCGA-33-6737-Tumor-SM-22J81	maf_call	0.48	2.99	1.0	21.0	0.58		old
+TCGA-36-1568-01	OV-TCGA-36-1568-Tumor	legacy_call	0.81	2.11	0.0	10.0	0.82		old
+TCGA-36-1569-01	OV-TCGA-36-1569-Tumor	legacy_call	0.56	3.93	2.0	26.0	0.71		old
+TCGA-36-1570-01	OV-TCGA-36-1570-Tumor	legacy_call	0.95	2.01	0.0	8.0	0.95		old
+TCGA-36-1571-01	OV-TCGA-36-1571-Tumor	legacy_call	0.91	3.18	1.0	14.0	0.94		old
+TCGA-36-1574-01	OV-TCGA-36-1574-Tumor	legacy_call	0.87	1.93	0.0	9.0	0.87		old
+TCGA-36-1575-01	OV-TCGA-36-1575-Tumor	legacy_call	0.97	2.77	1.0	11.0	0.98		old
+TCGA-36-1576-01	OV-TCGA-36-1576-Tumor	legacy_call	0.4	4.21	2.0	38.0	0.58		old
+TCGA-36-1577-01	OV-TCGA-36-1577-Tumor	legacy_call	0.8	1.81	0.0	9.0	0.78		old
+TCGA-36-1578-01	OV-TCGA-36-1578-Tumor	legacy_call	0.81	2.57	1.0	12.0	0.84		old
+TCGA-36-1580-01	OV-TCGA-36-1580-Tumor	legacy_call	0.53	4.6	2.0	33.0	0.72		old
+TCGA-36-1581-01	OV-TCGA-36-1581-Tumor	legacy_call	0.66	2.93	1.0	16.0	0.74		old
+TCGA-36-2539-01	OV-TCGA-36-2539-Tumor	legacy_call	0.58	1.8	0.0	13.0	0.55		old
+TCGA-36-2549-01	OV-TCGA-36-2549-Tumor	legacy_call	0.85	2.05	0.0	10.0	0.85		old
+TCGA-38-4629-01	LUAD-TCGA-38-4629-Tumor-SM-1M6EL	maf_call	0.4	2.46	1.0	26.0	0.45		old
+TCGA-38-4630-01	LUAD-TCGA-38-4630-Tumor-SM-1M6EV	maf_call	0.79	1.99	0.0	10.0	0.79		old
+TCGA-39-5027-01	LUSC-TCGA-39-5027-Tumor-SM-22J8Q	maf_call	0.68	1.79	0.0	11.0	0.66		old
+TCGA-41-3393-01	GBM-TCGA-41-3393-Tumor-SM-1NBON	legacy_call	0.67	2.03	0.0	12.0	0.67		old
+TCGA-44-2661-01	LUAD-TCGA-44-2661-Tumor-SM-1OINF	maf_call	0.29	1.85	0.0	35.0	0.27		old
+TCGA-44-3398-01	LUAD-TCGA-44-3398-Tumor-SM-1OINI	maf_call	0.19	2.12	0.0	56.0	0.2		old
+TCGA-44-6147-01	LUAD-TCGA-44-6147-Tumor-SM-1ZKHN	maf_call	0.47	1.93	0.0	17.0	0.46		old
+TCGA-44-6148-01	LUAD-TCGA-44-6148-Tumor-SM-1ZKHZ	maf_call	0.3	2.06	0.0	34.0	0.31		old
+TCGA-50-6597-01	LUAD-TCGA-50-6597-Tumor-SM-23JHT	maf_call	0.48	3.59	1.0	28.0	0.63		old
+TCGA-56-8623-01	LUSC-TCGA-56-8623-Tumor-SM-3MQ41	maf_call	0.96	1.95	0.0	8.0	0.96		old
+TCGA-56-A4BX-01	LUSC-TCGA-56-A4BX-Tumor-SM-3Q7OU	maf_call	0.87	3.0	1.0	13.0	0.91		old
+TCGA-57-1582-01	OV-TCGA-57-1582-Tumor	snp_call	0.82	4.08	2.0	19.0	0.91		old
+TCGA-57-1583-01	OV-TCGA-57-1583-Tumor	legacy_call	0.92	3.22	1.0	14.0	0.95		old
+TCGA-57-1584-01	OV-TCGA-57-1584-Tumor	legacy_call	0.84	1.9	0.0	9.0	0.83		old
+TCGA-57-1585-01	OV-TCGA-57-1585-Tumor	legacy_call	0.48	6.51	2.0	47.0	0.75		old
+TCGA-58-8390-01	LUSC-TCGA-58-8390-Tumor-SM-3DGHR	maf_call	0.82	1.75	0.0	9.0	0.8		old
+TCGA-60-2696-01	LUSC-TCGA-60-2696-Tumor	snp_call	0.42	1.72	0.0	18.0	0.39		old
+TCGA-60-2712-01	LUSC-TCGA-60-2712-Tumor-SM-172GY	maf_call	0.36	3.34	1.0	36.0	0.48		old
+TCGA-60-2715-01	LUSC-TCGA-60-2715-Tumor-SM-172FM	snp_call	0.19	1.93	0.0	57.0	0.18		old
+TCGA-61-1724-01	OV-TCGA-61-1724-Tumor	legacy_call	0.87	1.76	0.0	8.0	0.85		old
+TCGA-61-1734-01	OV-TCGA-61-1734-Tumor	legacy_call	0.9	1.94	0.0	8.0	0.9		old
+TCGA-61-1743-01	OV-TCGA-61-1743-Tumor	legacy_call	0.86	5.55	2.0	29.0	0.95		old
+TCGA-61-1917-01	OV-TCGA-61-1917-Tumor	legacy_call	0.84	3.03	1.0	14.0	0.89		old
+TCGA-61-1918-01	OV-TCGA-61-1918-Tumor	legacy_call	0.8	3.4	1.0	16.0	0.87		old
+TCGA-61-2017-01	OV-TCGA-61-2017-Tumor	legacy_call	0.88	1.98	0.0	9.0	0.87		old
+TCGA-61-2098-01	OV-TCGA-61-2098-Tumor	legacy_call	0.85	3.34	2.0	15.0	0.9		old
+TCGA-64-1678-01	LUAD-TCGA-64-1678-Tumor-SM-17RPP	maf_call	0.57	3.11	1.0	19.0	0.67		old
+TCGA-66-2737-01	LUSC-TCGA-66-2737-Tumor	snp_call	0.48	2.03	0.0	17.0	0.48		old
+TCGA-66-2753-01	LUSC-TCGA-66-2753-Tumor	snp_call	0.39	3.62	1.0	35.0	0.54		old
+TCGA-66-2790-01	LUSC-TCGA-66-2790-Tumor-SM-1AHAQ	maf_call	0.57	1.8	0.0	13.0	0.55		old
+TCGA-68-A59I-01	LUSC-TCGA-68-A59I-Tumor	snp_call	0.29	1.69	0.0	34.0	0.26		old
+TCGA-69-8453-01	LUAD-TCGA-69-8453-Tumor	snp_call	0.56	3.76	1.0	25.0	0.7		old
+TCGA-74-6577-01	GBM-TCGA-74-6577-Tumor-SM-23INZ	maf_call	0.64	2.12	0.0	13.0	0.66		old
+TCGA-75-6206-01	LUAD-TCGA-75-6206-Tumor-SM-1ZKJ1	maf_call	0.7	3.23	1.0	17.0	0.79		old
+TCGA-LUSC-71-01	LUSC-TCGA-LUSC-7138-Tumor-SM-2EQ4E	maf_call	0.39	2.5	1.0	27.0	0.44		old
+TCGA-77-A5GA-01	LUSC-TCGA-77-A5GA-Tumor-SM-4AI6T	maf_call	0.26	3.47	1.0	49.0	0.38		old
+TCGA-78-7143-01	LUAD-TCGA-78-7143-Tumor-SM-2FWRO	maf_call	0.52	4.69	2.0	34.0	0.71		old
+TCGA-95-7948-01	LUAD-TCGA-95-7948-Tumor-SM-2S75K	maf_call	0.71	3.51	1.0	18.0	0.81		old
+TCGA-96-A4JK-01	LUSC-TCGA-96-A4JK-Tumor-SM-3UST7	maf_call	0.5	2.82	1.0	20.0	0.59		old
+TCGA-98-A53D-01	LUSC-TCGA-98-A53D-Tumor	snp_call	0.99	1.95	0.0	8.0	0.99		old
+TCGA-A3-3306-01	KIRC-TCGA-A3-3306-Tumor	legacy_call	0.72	1.78	0.0	10.0	0.7		old
+TCGA-A3-3307-01	KIRC-TCGA-A3-3307-Tumor-SM-173P4	legacy_call	0.56	2.0	0.0	15.0	0.56		old
+TCGA-A3-3324-01	KIRC-TCGA-A3-3324-Tumor-SM-173Q6	legacy_maf_call	0.59	2.02	0.0	14.0	0.6		old
+TCGA-A3-3325-01	KIRC-TCGA-A3-3325-Tumor	legacy_call	0.42	3.36	1.0	31.0	0.55		old
+TCGA-A3-3335-01	KIRC-TCGA-A3-3335-Tumor	legacy_call	0.63	1.91	0.0	12.0	0.62		old
+TCGA-A3-3336-01	KIRC-TCGA-A3-3336-Tumor	legacy_call	0.56	2.12	0.0	15.0	0.58		old
+TCGA-A3-3343-01	KIRC-TCGA-A3-3343-Tumor	legacy_call	0.75	2.02	0.0	11.0	0.75		old
+TCGA-A3-3352-01	KIRC-TCGA-A3-3352-Tumor	legacy_call	0.49	3.79	1.0	29.0	0.64		old
+TCGA-A3-3359-01	KIRC-TCGA-A3-3359-Tumor	legacy_call	0.59	2.0	0.0	14.0	0.59		old
+TCGA-A3-3374-01	KIRC-TCGA-A3-3374-Tumor-SM-173QK	legacy_maf_call	0.64	3.14	1.0	18.0	0.74		old
+TCGA-A4-8516-01	KIRP_PAIR-TCGA-A4-8516-Tumor-SM-3MVC3	maf_call	0.86	2.23	0.0	10.0	0.87		old
+TCGA-A5-A0G2-01	UCEC-TCGA-A5-A0G2-Tumor	legacy_call	0.42	1.85	0.0	19.0	0.41		old
+TCGA-A6-2672-01	COAD-TCGA-A6-2672-Tumor	legacy_call	0.59	2.07	0.0	14.0	0.59		old
+TCGA-A6-2676-01	COAD-TCGA-A6-2676-Tumor	legacy_call	0.69	2.03	0.0	12.0	0.7		old
+TCGA-A6-2679-01	COAD-TCGA-A6-2679-Tumor	legacy_call	0.48	3.46	1.0	27.0	0.62		old
+TCGA-A6-2680-01	COAD-TCGA-A6-2680-Tumor	legacy_call	0.58	3.13	1.0	19.0	0.68		old
+TCGA-A6-6140-01	COAD-TCGA-A6-6140-Tumor	legacy_call	0.81	2.17	0.0	11.0	0.82		old
+TCGA-A8-A06Y-01	WU-BRCA-TCGA-A8-A06Y-01A-21W-A019-09	maf_call	0.92	1.91	0.0	8.0	0.92		old
+TCGA-A8-A07R-01	WU-BRCA-TCGA-A8-A07R-01A-21W-A050-09	maf_call	0.77	2.76	1.0	14.0	0.83		old
+TCGA-A8-A07S-01	BRCA-TCGA-A8-A07S-Tumor	snp_call	0.94	2.02	0.0	8.0	0.94		old
+TCGA-A8-A083-01	WU-BRCA-TCGA-A8-A083-01A-21W-A019-09	maf_call	0.77	2.09	0.0	11.0	0.78		old
+TCGA-A8-A084-01	WU-BRCA-TCGA-A8-A084-01A-21W-A019-09	maf_call	0.78	3.81	1.0	18.0	0.87		old
+TCGA-A8-A08F-01	WU-BRCA-TCGA-A8-A08F-01A-11W-A019-09	maf_call	0.61	3.22	1.0	19.0	0.72		old
+TCGA-A8-A09E-01	WU-BRCA-TCGA-A8-A09E-01A-11W-A019-09	maf_call	0.8	3.13	1.0	15.0	0.86		old
+TCGA-AA-3488-01	COAD-TCGA-AA-3488-Tumor	legacy_call	0.82	3.03	1.0	14.0	0.88		old
+TCGA-AA-3494-01	COAD-TCGA-AA-3494-Tumor	legacy_call	0.74	3.23	1.0	16.0	0.82		old
+TCGA-AA-3495-01	COAD-TCGA-AA-3495-Tumor	legacy_call	0.57	2.25	0.0	15.0	0.6		old
+TCGA-AA-3516-01	COAD-TCGA-AA-3516-Tumor	legacy_call	0.39	1.99	0.0	21.0	0.39		old
+TCGA-AA-3518-01	COAD-TCGA-AA-3518-Tumor	legacy_call	0.4	2.0	0.0	21.0	0.4		old
+TCGA-AA-3525-01	COAD-TCGA-AA-3525-Tumor	legacy_call	0.64	2.0	0.0	13.0	0.64		old
+TCGA-AA-3542-01	COAD-TCGA-AA-3542-Tumor	legacy_call	0.87	3.42	1.0	15.0	0.92		old
+TCGA-AA-3543-01	COAD-TCGA-AA-3543-Tumor	legacy_call	0.7	2.04	0.0	12.0	0.71		old
+TCGA-AA-3552-01	COAD-TCGA-AA-3552-Tumor	legacy_call	0.52	3.35	1.0	22.0	0.64		old
+TCGA-AA-3553-01	COAD-TCGA-AA-3553-Tumor	legacy_call	0.58	3.39	1.0	20.0	0.7		old
+TCGA-AA-3554-01	COAD-TCGA-AA-3554-Tumor	legacy_call	0.39	2.0	0.0	21.0	0.39		old
+TCGA-AA-3555-01	COAD-TCGA-AA-3555-Tumor	legacy_call	0.74	2.0	0.0	11.0	0.74		old
+TCGA-AA-3556-01	COAD-TCGA-AA-3556-Tumor	legacy_call	0.78	2.04	0.0	10.0	0.78		old
+TCGA-AA-3562-01	COAD-TCGA-AA-3562-Tumor	legacy_call	0.58	3.5	1.0	20.0	0.71		old
+TCGA-AA-3662-01	COAD-TCGA-AA-3662-Tumor	legacy_call	0.68	3.0	1.0	16.0	0.76		old
+TCGA-AA-3672-01	COAD-TCGA-AA-3672-Tumor	legacy_call	0.69	2.05	0.0	12.0	0.7		old
+TCGA-AA-3696-01	COAD-TCGA-AA-3696-Tumor	legacy_call	0.83	2.27	0.0	11.0	0.85		old
+TCGA-AA-3697-01	COAD-TCGA-AA-3697-Tumor	legacy_call	0.67	3.86	1.0	20.0	0.8		old
+TCGA-AA-3860-01	COAD-TCGA-AA-3860-Tumor	legacy_call	0.79	1.72	0.0	9.0	0.77		old
+TCGA-AA-3869-01	COAD-TCGA-AA-3869-Tumor	legacy_call	0.7	3.35	1.0	17.0	0.79		old
+TCGA-AA-3870-01	COAD-TCGA-AA-3870-Tumor	legacy_call	0.61	2.04	0.0	13.0	0.62		old
+TCGA-AA-3872-01	COAD-TCGA-AA-3872-Tumor	legacy_call	0.59	2.86	1.0	17.0	0.67		old
+TCGA-AA-3930-01	COAD-TCGA-AA-3930-Tumor	legacy_call	0.68	1.94	0.0	12.0	0.67		old
+TCGA-AA-3941-01	COAD-TCGA-AA-3941-Tumor	snp_call	0.82	3.0	1.0	14.0	0.87		old
+TCGA-AA-3972-01	COAD-TCGA-AA-3972-Tumor	legacy_call	0.77	3.86	1.0	18.0	0.86		old
+TCGA-AA-A00A-01	COAD-TCGA-AA-A00A-Tumor	legacy_call	1.0	1.99	0.0	8.0	1.0		old
+TCGA-AA-A00D-01	COAD-TCGA-AA-A00D-Tumor	legacy_call	0.52	2.16	0.0	16.0	0.54		old
+TCGA-AA-A00E-01	COAD-TCGA-AA-A00E-Tumor	legacy_call	0.54	2.01	0.0	15.0	0.54		old
+TCGA-AA-A00F-01	COAD-TCGA-AA-A00F-Tumor	legacy_call	0.45	3.14	1.0	27.0	0.56		old
+TCGA-AA-A00J-01	COAD-TCGA-AA-A00J-Tumor	legacy_call	0.82	2.03	0.0	10.0	0.82		old
+TCGA-AA-A00K-01	COAD-TCGA-AA-A00K-Tumor	legacy_call	0.67	2.12	0.0	13.0	0.68		old
+TCGA-AA-A00L-01	COAD-TCGA-AA-A00L-Tumor	legacy_call	0.79	2.11	0.0	11.0	0.8		old
+TCGA-AA-A00Q-01	COAD-TCGA-AA-A00Q-Tumor	legacy_call	0.57	3.62	1.0	21.0	0.7		old
+TCGA-AA-A00R-01	COAD-TCGA-AA-A00R-Tumor	legacy_call	0.51	2.05	0.0	16.0	0.52		old
+TCGA-AA-A00U-01	COAD-TCGA-AA-A00U-Tumor	legacy_call	0.76	1.98	0.0	10.0	0.75		old
+TCGA-AA-A00W-01	COAD-TCGA-AA-A00W-Tumor	legacy_call	0.83	1.98	0.0	9.0	0.83		old
+TCGA-AA-A01F-01	COAD-TCGA-AA-A01F-Tumor	legacy_call	0.89	2.8	1.0	12.0	0.92		old
+TCGA-AA-A01G-01	COAD-TCGA-AA-A01G-Tumor	legacy_call	0.52	4.44	1.0	32.0	0.7		old
+TCGA-AA-A01Q-01	COAD-TCGA-AA-A01Q-Tumor	legacy_call	0.86	2.03	0.0	9.0	0.86		old
+TCGA-AF-3913-01	READ-TCGA-AF-3913-Tumor	legacy_call	0.76	2.51	1.0	13.0	0.8		old
+TCGA-AG-3574-01	READ-TCGA-AG-3574-Tumor	legacy_call	0.86	2.19	0.0	10.0	0.87		old
+TCGA-AG-3578-01	READ-TCGA-AG-3578-Tumor	legacy_call	0.77	3.6	1.0	17.0	0.86		old
+TCGA-AG-3582-01	READ-TCGA-AG-3582-Tumor	legacy_call	0.76	3.1	2.0	15.0	0.83		old
+TCGA-AG-3586-01	READ-TCGA-AG-3586-Tumor	legacy_call	0.75	2.09	0.0	11.0	0.75		old
+TCGA-AG-3587-01	READ-TCGA-AG-3587-Tumor	legacy_call	0.79	3.54	2.0	17.0	0.87		old
+TCGA-AG-3593-01	READ-TCGA-AG-3593-Tumor	legacy_call	0.73	3.62	1.0	18.0	0.83		old
+TCGA-AG-3600-01	READ-TCGA-AG-3600-Tumor	legacy_call	0.76	2.81	1.0	14.0	0.82		old
+TCGA-AG-3601-01	READ-TCGA-AG-3601-Tumor	legacy_call	0.76	3.39	1.0	16.0	0.84		old
+TCGA-AG-3608-01	READ-TCGA-AG-3608-Tumor	legacy_call	0.74	2.08	0.0	11.0	0.74		old
+TCGA-AG-3609-01	READ-TCGA-AG-3609-Tumor	legacy_call	0.67	2.74	1.0	15.0	0.74		old
+TCGA-AG-3611-01	READ-TCGA-AG-3611-Tumor	legacy_call	0.87	3.52	1.0	16.0	0.92		old
+TCGA-AG-3612-01	READ-TCGA-AG-3612-Tumor	legacy_call	0.72	2.5	0.0	13.0	0.76		old
+TCGA-AG-3728-01	READ-TCGA-AG-3728-Tumor	legacy_call	0.55	3.02	1.0	19.0	0.65		old
+TCGA-AG-A00H-01	READ-TCGA-AG-A00H-Tumor	legacy_call	0.45	3.62	1.0	30.0	0.6		old
+TCGA-AG-A014-01	READ-TCGA-AG-A014-Tumor	legacy_call	0.78	3.67	1.0	17.0	0.86		old
+TCGA-AG-A023-01	READ-TCGA-AG-A023-Tumor	legacy_call	0.55	2.12	0.0	15.0	0.56		old
+TCGA-AG-A032-01	READ-TCGA-AG-A032-Tumor	legacy_call	0.69	3.54	1.0	18.0	0.8		old
+TCGA-AK-3425-01	KIRC-TCGA-AK-3425-Tumor	legacy_call	0.45	2.0	0.0	18.0	0.45		old
+TCGA-AK-3427-01	KIRC-TCGA-AK-3427-Tumor-SM-173PW	legacy_maf_call	0.85	1.95	0.0	9.0	0.85		old
+TCGA-AK-3428-01	KIRC-TCGA-AK-3428-Tumor	legacy_call	0.7	1.98	0.0	11.0	0.7		old
+TCGA-AK-3431-01	KIRC-TCGA-AK-3431-Tumor	legacy_call	0.47	1.96	0.0	17.0	0.47		old
+TCGA-AK-3433-01	KIRC-TCGA-AK-3433-Tumor	legacy_call	0.92	1.5	0.0	6.0	0.9		old
+TCGA-AK-3434-01	KIRC-TCGA-AK-3434-Tumor	legacy_call	0.47	3.87	1.0	31.0	0.63		old
+TCGA-AK-3445-01	KIRC-TCGA-AK-3445-Tumor	legacy_call	0.56	2.06	0.0	15.0	0.56		old
+TCGA-AK-3450-01	KIRC-TCGA-AK-3450-Tumor	legacy_call	0.56	2.03	0.0	15.0	0.56		old
+TCGA-AK-3453-01	KIRC-TCGA-AK-3453-Tumor-SM-173P9	legacy_maf_call	0.8	2.77	1.0	13.0	0.85		old
+TCGA-AK-3454-01	KIRC-TCGA-AK-3454-Tumor	legacy_call	0.6	2.0	0.0	14.0	0.6		old
+TCGA-AK-3460-01	KIRC-TCGA-AK-3460-Tumor	legacy_call	0.6	1.99	0.0	13.0	0.6		old
+TCGA-AL-3468-01	KIRP-TCGA-AL-3468-Tumor	maf_call	0.89	2.35	0.0	10.0	0.9		old
+TCGA-AL-A5DJ-01	KIRP-TCGA-AL-A5DJ-Tumor	maf_call	0.66	2.89	1.0	16.0	0.74		old
+TCGA-AO-A0JL-01	WU-BRCA-TCGA-AO-A0JL-01A-11W-A071-09	maf_call	0.64	5.82	2.0	36.0	0.84		old
+TCGA-AO-A12B-01	WU-BRCA-TCGA-AO-A12B-01A-11D-A10M-09	maf_call	0.78	3.5	1.0	17.0	0.86		old
+TCGA-AP-A053-01	UCEC-TCGA-AP-A053-Tumor	maf_call	0.92	2.0	0.0	8.0	0.92		old
+TCGA-AP-A1DM-01	UCEC-TCGA-AP-A1DM-Tumor	legacy_call	0.75	2.04	0.0	11.0	0.75		old
+TCGA-AP-A1E4-01	UCEC-TCGA-AP-A1E4-Tumor	legacy_call	0.9	2.17	0.0	9.0	0.91		old
+TCGA-AQ-A04L-01	BRCA-TCGA-AQ-A04L-Tumor	snp_call	0.76	3.93	2.0	19.0	0.86		old
+TCGA-AR-A0TS-01	WU-BRCA-TCGA-AR-A0TS-01A-11D-A10Y-09	maf_call	0.29	1.64	0.0	33.0	0.25		old
+TCGA-AR-A2LL-01	WU-BRCA-TCGA-AR-A2LL-01A-11D-A17W-09	maf_call	0.71	2.18	0.0	12.0	0.72		old
+TCGA-AR-A2LR-01	WU-BRCA-TCGA-AR-A2LR-01A-12D-A18P-09	maf_call	0.77	2.81	1.0	14.0	0.82		old
+TCGA-AX-A06D-01	UCEC-TCGA-AX-A06D-Tumor	legacy_call	0.88	2.12	0.0	9.0	0.88		old
+TCGA-AX-A0IS-01	UCEC-TCGA-AX-A0IS-Tumor	maf_call	0.84	2.13	0.0	10.0	0.85		old
+TCGA-AX-A1CP-01	UCEC-TCGA-AX-A1CP-Tumor	maf_call	0.68	1.92	0.0	11.0	0.67		old
+TCGA-AX-A1CR-01	UCEC-TCGA-AX-A1CR-Tumor	legacy_call	0.7	3.42	1.0	18.0	0.8		old
+TCGA-AX-A2H8-01	UCEC-TCGA-AX-A2H8-Tumor	legacy_call	0.77	1.94	0.0	10.0	0.76		old
+TCGA-AX-A2HF-01	UCEC-TCGA-AX-A2HF-Tumor	maf_call	0.9	1.77	0.0	8.0	0.88		old
+TCGA-AX-A3G3-01	UCEC-TCGA-AX-A3G3-Tumor	snp_call	0.65	3.47	1.0	19.0	0.76		old
+TCGA-AZ-4313-01	COAD-TCGA-AZ-4313-Tumor	legacy_call	0.52	2.14	0.0	16.0	0.54		old
+TCGA-AZ-4684-01	COAD-TCGA-AZ-4684-Tumor	legacy_call	0.47	3.65	1.0	29.0	0.62		old
+TCGA-AZ-6601-01	COAD-TCGA-AZ-6601-Tumor	legacy_call	0.46	2.0	0.0	18.0	0.46		old
+TCGA-AZ-6608-01	COAD-TCGA-AZ-6608-Tumor	legacy_call	0.89	3.38	1.0	15.0	0.93		old
+TCGA-B0-4688-01	KIRC-TCGA-B0-4688-Tumor	legacy_call	0.7	2.43	1.0	13.0	0.74		old
+TCGA-B0-4690-01	KIRC-TCGA-B0-4690-Tumor	legacy_call	0.37	2.17	0.0	27.0	0.39		old
+TCGA-B0-4691-01	KIRC-TCGA-B0-4691-Tumor	legacy_call	0.55	2.0	0.0	15.0	0.55		old
+TCGA-B0-4693-01	KIRC-TCGA-B0-4693-Tumor	legacy_call	0.51	2.05	0.0	16.0	0.52		old
+TCGA-B0-4694-01	KIRC-TCGA-B0-4694-Tumor	legacy_call	0.25	3.8	1.0	52.0	0.39		old
+TCGA-B0-4696-01	KIRC-TCGA-B0-4696-Tumor	legacy_call	0.73	3.87	2.0	19.0	0.84		old
+TCGA-B0-4699-01	KIRC-TCGA-B0-4699-Tumor	legacy_call	0.74	1.58	0.0	9.0	0.69		old
+TCGA-B0-4701-01	KIRC-TCGA-B0-4701-Tumor	legacy_call	0.42	2.0	0.0	20.0	0.42		old
+TCGA-B0-4703-01	KIRC-TCGA-B0-4703-Tumor	legacy_call	0.38	1.97	0.0	24.0	0.37		old
+TCGA-B0-4707-01	KIRC-TCGA-B0-4707-Tumor	legacy_call	0.4	3.05	1.0	30.0	0.5		old
+TCGA-B0-4713-01	KIRC-TCGA-B0-4713-Tumor	legacy_call	0.45	2.18	0.0	19.0	0.47		old
+TCGA-B0-4714-01	KIRC-TCGA-B0-4714-Tumor	legacy_call	0.58	2.07	0.0	14.0	0.59		old
+TCGA-B0-4718-01	KIRC-TCGA-B0-4718-Tumor	legacy_call	0.75	1.88	0.0	10.0	0.74		old
+TCGA-B0-4813-01	KIRC-TCGA-B0-4813-Tumor	legacy_call	0.77	1.88	0.0	10.0	0.76		old
+TCGA-B0-4814-01	KIRC-TCGA-B0-4814-Tumor	legacy_call	0.47	4.03	1.0	32.0	0.64		old
+TCGA-B0-4817-01	KIRC-TCGA-B0-4817-Tumor	legacy_call	0.24	1.88	0.0	44.0	0.23		old
+TCGA-B0-4819-01	KIRC-TCGA-B0-4819-Tumor	legacy_call	0.85	2.01	0.0	9.0	0.85		old
+TCGA-B0-4822-01	KIRC-TCGA-B0-4822-Tumor	legacy_call	0.3	2.72	1.0	39.0	0.36		old
+TCGA-B0-4823-01	KIRC-TCGA-B0-4823-Tumor-SM-1PAVH	legacy_maf_call	0.56	2.04	0.0	15.0	0.56		old
+TCGA-B0-4824-01	KIRC-TCGA-B0-4824-Tumor	legacy_call	0.56	1.93	0.0	14.0	0.56		old
+TCGA-B0-4828-01	KIRC-TCGA-B0-4828-Tumor	legacy_call	0.72	2.06	0.0	11.0	0.73		old
+TCGA-B0-4833-01	KIRC-TCGA-B0-4833-Tumor	legacy_call	0.4	4.07	1.0	37.0	0.57		old
+TCGA-B0-4834-01	KIRC-TCGA-B0-4834-Tumor	legacy_call	0.79	1.9	0.0	10.0	0.78		old
+TCGA-B0-4836-01	KIRC-TCGA-B0-4836-Tumor	legacy_call	0.38	3.56	1.0	36.0	0.52		old
+TCGA-B0-4837-01	KIRC-TCGA-B0-4837-Tumor	legacy_call	0.57	1.88	0.0	14.0	0.55		old
+TCGA-B0-4838-01	KIRC-TCGA-B0-4838-Tumor	legacy_call	0.35	4.28	1.0	42.0	0.54		old
+TCGA-B0-4839-01	KIRC-TCGA-B0-4839-Tumor	legacy_call	0.7	2.12	0.0	12.0	0.71		old
+TCGA-B0-4841-01	KIRC-TCGA-B0-4841-Tumor	legacy_call	0.75	2.07	0.0	11.0	0.75		old
+TCGA-B0-4843-01	KIRC-TCGA-B0-4843-Tumor	legacy_call	0.31	3.85	1.0	44.0	0.47		old
+TCGA-B0-4844-01	KIRC-TCGA-B0-4844-Tumor	legacy_call	0.66	2.94	1.0	16.0	0.74		old
+TCGA-B0-4845-01	KIRC-TCGA-B0-4845-Tumor	legacy_call	0.64	3.56	1.0	19.0	0.76		old
+TCGA-B0-4846-01	KIRC-TCGA-B0-4846-Tumor	legacy_call	0.55	1.97	0.0	15.0	0.55		old
+TCGA-B0-4847-01	KIRC-TCGA-B0-4847-Tumor	legacy_call	0.54	1.95	0.0	15.0	0.53		old
+TCGA-B0-4848-01	KIRC-TCGA-B0-4848-Tumor	legacy_call	0.46	1.93	0.0	18.0	0.45		old
+TCGA-B0-4849-01	KIRC-TCGA-B0-4849-Tumor	legacy_call	0.6	1.94	0.0	13.0	0.59		old
+TCGA-B0-5075-01	KIRC-TCGA-B0-5075-Tumor-SM-1QMQQ	legacy_maf_call	0.55	2.06	0.0	15.0	0.56		old
+TCGA-B0-5085-01	KIRC-TCGA-B0-5085-Tumor-SM-1QMS4	legacy_maf_call	0.68	2.01	0.0	12.0	0.68		old
+TCGA-B1-A47O-01	KIRP-TCGA-B1-A47O-Tumor	maf_call	0.85	4.08	1.0	18.0	0.92		old
+TCGA-B2-4101-01	KIRC-TCGA-B2-4101-Tumor-SM-1T8FF	legacy_maf_call	0.47	2.01	0.0	18.0	0.47		old
+TCGA-B3-4103-01	KIRP-TCGA-B3-4103-Tumor	maf_call	0.76	2.27	0.0	12.0	0.79		old
+TCGA-B5-A0K0-01	UCEC-TCGA-B5-A0K0-Tumor	maf_call	0.71	2.09	0.0	12.0	0.72		old
+TCGA-B5-A0KB-01	UCEC-TCGA-B5-A0KB-Tumor	legacy_call	0.38	3.61	1.0	36.0	0.52		old
+TCGA-B5-A11E-01	UCEC-TCGA-B5-A11E-Tumor	maf_call	0.87	2.12	0.0	10.0	0.88		old
+TCGA-B5-A11Z-01	UCEC-TCGA-B5-A11Z-Tumor	maf_call	0.86	2.07	0.0	9.0	0.86		old
+TCGA-B5-A1MZ-01	UCEC-TCGA-B5-A1MZ-Tumor	legacy_call	0.8	2.07	0.0	10.0	0.8		old
+TCGA-B6-A0X4-01	WU-BRCA-TCGA-B6-A0X4-01A-11D-A10G-09	maf_call	0.81	2.03	0.0	10.0	0.81		old
+TCGA-B8-4622-01	KIRC-TCGA-B8-4622-Tumor-SM-1U1IG	legacy_maf_call	0.55	2.05	0.0	15.0	0.56		old
+TCGA-B8-5159-01	KIRC-TCGA-B8-5159-Tumor-SM-1PAU8	legacy_maf_call	0.71	2.11	0.0	12.0	0.72		old
+TCGA-B8-5545-01	KIRC-TCGA-B8-5545-Tumor-SM-1XN29	legacy_maf_call	0.47	1.95	0.0	17.0	0.47		old
+TCGA-BA-4075-01	HNSC-TCGA-BA-4075-Tumor-SM-1PNIO	legacy_maf_call	0.67	2.78	1.0	15.0	0.74		old
+TCGA-BA-4077-01	HNSC-TCGA-BA-4077-Tumor-SM-1PNJ9	legacy_maf_call	0.73	2.12	0.0	12.0	0.74		old
+TCGA-BB-7861-01	HNSC-TCGA-BB-7861-Tumor-SM-2XW91	maf_call	0.36	2.12	0.0	28.0	0.37		old
+TCGA-BB-7862-01	HNSC-TCGA-BB-7862-Tumor-SM-2XW97	maf_call	0.8	1.83	0.0	9.0	0.78		old
+TCGA-BB-7863-01	HNSC-TCGA-BB-7863-Tumor-SM-2XW9C	maf_call	0.52	2.06	0.0	16.0	0.53		old
+TCGA-BB-7864-01	HNSC-TCGA-BB-7864-Tumor-SM-2XW9H	maf_call	0.65	2.11	0.0	13.0	0.67		old
+TCGA-BB-7866-01	HNSC-TCGA-BB-7866-Tumor-SM-2XW9M	maf_call	0.76	1.93	0.0	10.0	0.75		old
+TCGA-BB-7871-01	HNSC-TCGA-BB-7871-Tumor-SM-2XW9W	maf_call	0.59	1.88	0.0	13.0	0.57		old
+TCGA-BB-7872-01	HNSC-TCGA-BB-7872-Tumor-SM-2XWA2	maf_call	0.4	2.04	0.0	21.0	0.41		old
+TCGA-BD-A3ER-01	LIHC-TCGA-BD-A3ER-Tumor	maf_call	0.55	2.1	0.0	15.0	0.56		old
+TCGA-BG-A0LX-01	UCEC-TCGA-BG-A0LX-Tumor	maf_call	0.79	2.09	0.0	10.0	0.8		old
+TCGA-BG-A0M0-01	UCEC-TCGA-BG-A0M0-Tumor	maf_call	0.85	2.18	0.0	10.0	0.86		old
+TCGA-BG-A0M2-01	UCEC-TCGA-BG-A0M2-Tumor	maf_call	0.8	2.32	0.0	11.0	0.82		old
+TCGA-BG-A0M8-01	UCEC-TCGA-BG-A0M8-Tumor	maf_call	0.45	3.5	1.0	29.0	0.59		old
+TCGA-BG-A0MS-01	UCEC-TCGA-BG-A0MS-Tumor	maf_call	0.76	2.19	0.0	11.0	0.78		old
+TCGA-BG-A0RY-01	UCEC-TCGA-BG-A0RY-Tumor	maf_call	0.78	2.4	0.0	12.0	0.81		old
+TCGA-BG-A0W1-01	UCEC-TCGA-BG-A0W1-Tumor	maf_call	0.88	2.22	0.0	10.0	0.89		old
+TCGA-BG-A0YU-01	UCEC-TCGA-BG-A0YU-Tumor	maf_call	0.67	2.03	0.0	12.0	0.68		old
+TCGA-BG-A18A-01	UCEC-TCGA-BG-A18A-Tumor	maf_call	0.62	2.05	0.0	13.0	0.62		old
+TCGA-BG-A221-01	UCEC-TCGA-BG-A221-Tumor	legacy_call	0.51	2.09	0.0	16.0	0.53		old
+TCGA-BG-A222-01	UCEC-TCGA-BG-A222-Tumor	legacy_call	0.82	2.05	0.0	10.0	0.82		old
+TCGA-BH-A0B2-01	BRCA-TCGA-BH-A0B2-Tumor	snp_call	0.5	2.11	0.0	17.0	0.52		old
+TCGA-BH-A0B6-01	BRCA-TCGA-BH-A0B6-Tumor	snp_call	0.31	3.53	1.0	42.0	0.44		old
+TCGA-BH-A1F5-01	WU-BRCA-TCGA-BH-A1F5-01A-12D-A13L-09	maf_call	0.83	2.0	0.0	10.0	0.83		old
+TCGA-BJ-A290-01	THCA-TCGA-BJ-A290-Tumor-SM-29SSI	maf_call	0.8	2.09	0.0	10.0	0.81		old
+TCGA-BJ-A291-01	THCA-TCGA-BJ-A291-Tumor-SM-23FY9	legacy_call	0.75	2.0	0.0	11.0	0.75		old
+TCGA-BJ-A2N9-01	THCA-TCGA-BJ-A2N9-Tumor-SM-2BWJJ	maf_call	0.88	2.24	0.0	10.0	0.89		old
+TCGA-BJ-A3F0-01	THCA-TCGA-BJ-A3F0-Tumor-SM-2HRKY	maf_call	0.72	1.94	0.0	11.0	0.71		old
+TCGA-BK-A13C-01	UCEC-TCGA-BK-A13C-Tumor	maf_call	0.93	2.07	0.0	9.0	0.93		old
+TCGA-BP-4158-01	KIRC-TCGA-BP-4158-Tumor	legacy_call	0.62	2.05	0.0	13.0	0.62		old
+TCGA-BP-4159-01	KIRC-TCGA-BP-4159-Tumor	legacy_call	0.6	2.07	0.0	14.0	0.61		old
+TCGA-BP-4160-01	KIRC-TCGA-BP-4160-Tumor	legacy_call	0.44	2.02	0.0	19.0	0.44		old
+TCGA-BP-4165-01	KIRC-TCGA-BP-4165-Tumor	legacy_call	0.66	1.98	0.0	12.0	0.65		old
+TCGA-BP-4166-01	KIRC-TCGA-BP-4166-Tumor	legacy_call	0.33	3.21	1.0	38.0	0.45		old
+TCGA-BP-4169-01	KIRC-TCGA-BP-4169-Tumor	legacy_call	0.4	1.97	0.0	21.0	0.39		old
+TCGA-BP-4170-01	KIRC-TCGA-BP-4170-Tumor	legacy_call	0.56	2.06	0.0	15.0	0.56		old
+TCGA-BP-4174-01	KIRC-TCGA-BP-4174-Tumor	legacy_call	0.62	2.43	0.0	15.0	0.67		old
+TCGA-BP-4176-01	KIRC-TCGA-BP-4176-Tumor	legacy_call	0.56	3.0	1.0	19.0	0.66		old
+TCGA-BP-4177-01	KIRC-TCGA-BP-4177-Tumor-SM-1PAVX	legacy_maf_call	0.64	2.15	0.0	13.0	0.66		old
+TCGA-BP-4325-01	KIRC-TCGA-BP-4325-Tumor	legacy_call	0.73	1.98	0.0	11.0	0.73		old
+TCGA-BP-4326-01	KIRC-TCGA-BP-4326-Tumor	legacy_call	0.82	1.96	0.0	10.0	0.82		old
+TCGA-BP-4327-01	KIRC-TCGA-BP-4327-Tumor	legacy_call	0.77	1.89	0.0	10.0	0.76		old
+TCGA-BP-4329-01	KIRC-TCGA-BP-4329-Tumor	legacy_call	0.56	1.95	0.0	14.0	0.55		old
+TCGA-BP-4330-01	KIRC-TCGA-BP-4330-Tumor	legacy_call	0.52	2.01	0.0	16.0	0.52		old
+TCGA-BP-4331-01	KIRC-TCGA-BP-4331-Tumor	legacy_call	0.55	1.95	0.0	15.0	0.54		old
+TCGA-BP-4332-01	KIRC-TCGA-BP-4332-Tumor	legacy_call	0.68	2.04	0.0	12.0	0.68		old
+TCGA-BP-4334-01	KIRC-TCGA-BP-4334-Tumor	legacy_call	0.86	1.62	0.0	8.0	0.83		old
+TCGA-BP-4335-01	KIRC-TCGA-BP-4335-Tumor	legacy_call	0.46	4.07	1.0	33.0	0.63		old
+TCGA-BP-4337-01	KIRC-TCGA-BP-4337-Tumor	legacy_call	0.35	2.48	0.0	31.0	0.4		old
+TCGA-BP-4340-01	KIRC-TCGA-BP-4340-Tumor	legacy_call	0.73	1.96	0.0	11.0	0.73		old
+TCGA-BP-4341-01	KIRC-TCGA-BP-4341-Tumor	legacy_call	0.72	1.95	0.0	11.0	0.72		old
+TCGA-BP-4342-01	KIRC-TCGA-BP-4342-Tumor	legacy_call	0.62	3.22	1.0	18.0	0.72		old
+TCGA-BP-4343-01	KIRC-TCGA-BP-4343-Tumor	legacy_call	0.27	2.77	1.0	43.0	0.34		old
+TCGA-BP-4344-01	KIRC-TCGA-BP-4344-Tumor	legacy_call	0.43	1.99	0.0	19.0	0.43		old
+TCGA-BP-4346-01	KIRC-TCGA-BP-4346-Tumor	legacy_call	0.44	1.94	0.0	19.0	0.43		old
+TCGA-BP-4347-01	KIRC-TCGA-BP-4347-Tumor	legacy_call	0.41	2.0	0.0	20.0	0.41		old
+TCGA-BP-4349-01	KIRC-TCGA-BP-4349-Tumor	legacy_call	0.52	2.02	0.0	16.0	0.52		old
+TCGA-BP-4351-01	KIRC-TCGA-BP-4351-Tumor	legacy_call	0.44	3.41	1.0	30.0	0.57		old
+TCGA-BP-4352-01	KIRC-TCGA-BP-4352-Tumor	legacy_call	0.68	3.67	2.0	19.0	0.8		old
+TCGA-BP-4353-01	KIRC-TCGA-BP-4353-Tumor	legacy_call	0.32	3.56	1.0	41.0	0.46		old
+TCGA-BP-4354-01	KIRC-TCGA-BP-4354-Tumor	legacy_call	0.21	1.96	0.0	51.0	0.21		old
+TCGA-BP-4355-01	KIRC-TCGA-BP-4355-Tumor	legacy_call	0.46	2.01	0.0	18.0	0.46		old
+TCGA-BP-4756-01	KIRC-TCGA-BP-4756-Tumor	legacy_call	0.87	2.2	0.0	10.0	0.88		old
+TCGA-BP-4758-01	KIRC-TCGA-BP-4758-Tumor	legacy_call	0.63	1.99	0.0	13.0	0.63		old
+TCGA-BP-4761-01	KIRC-TCGA-BP-4761-Tumor	legacy_call	0.65	1.91	0.0	12.0	0.64		old
+TCGA-BP-4762-01	KIRC-TCGA-BP-4762-Tumor	snp_call	0.47	1.98	0.0	17.0	0.47		old
+TCGA-BP-4763-01	KIRC-TCGA-BP-4763-Tumor	legacy_call	0.41	2.01	0.0	20.0	0.41		old
+TCGA-BP-4765-01	KIRC-TCGA-BP-4765-Tumor	legacy_call	0.56	1.99	0.0	15.0	0.56		old
+TCGA-BP-4766-01	KIRC-TCGA-BP-4766-Tumor	legacy_call	0.66	2.01	0.0	12.0	0.66		old
+TCGA-BP-4768-01	KIRC-TCGA-BP-4768-Tumor	legacy_call	0.71	3.43	1.0	17.0	0.81		old
+TCGA-BP-4774-01	KIRC-TCGA-BP-4774-Tumor	legacy_call	0.52	1.96	0.0	16.0	0.51		old
+TCGA-BP-4775-01	KIRC-TCGA-BP-4775-Tumor	legacy_call	0.46	2.84	1.0	21.0	0.55		old
+TCGA-BP-4776-01	KIRC-TCGA-BP-4776-Tumor	legacy_call	0.52	1.99	0.0	16.0	0.52		old
+TCGA-BP-4777-01	KIRC-TCGA-BP-4777-Tumor	legacy_call	0.39	1.9	0.0	21.0	0.37		old
+TCGA-BP-4787-01	KIRC-TCGA-BP-4787-Tumor	legacy_call	0.48	2.11	0.0	17.0	0.5		old
+TCGA-BP-4789-01	KIRC-TCGA-BP-4789-Tumor	legacy_call	0.29	4.1	1.0	49.0	0.45		old
+TCGA-BP-4790-01	KIRC-TCGA-BP-4790-Tumor	legacy_call	0.38	2.07	0.0	24.0	0.39		old
+TCGA-BP-4797-01	KIRC-TCGA-BP-4797-Tumor	legacy_call	0.31	3.67	1.0	44.0	0.45		old
+TCGA-BP-4798-01	KIRC-TCGA-BP-4798-Tumor	legacy_call	0.25	3.99	1.0	54.0	0.4		old
+TCGA-BP-4799-01	KIRC-TCGA-BP-4799-Tumor	legacy_call	0.33	2.53	1.0	34.0	0.38		old
+TCGA-BP-4801-01	KIRC-TCGA-BP-4801-Tumor-SM-1PAUL	legacy_maf_call	0.49	1.96	0.0	17.0	0.48		old
+TCGA-BP-4803-01	KIRC-TCGA-BP-4803-Tumor	legacy_call	0.69	1.99	0.0	12.0	0.69		old
+TCGA-BP-4807-01	KIRC-TCGA-BP-4807-Tumor	legacy_call	0.78	1.95	0.0	10.0	0.77		old
+TCGA-BP-4959-01	KIRC-TCGA-BP-4959-Tumor	legacy_call	0.44	1.87	0.0	18.0	0.42		old
+TCGA-BP-4963-01	KIRC-TCGA-BP-4963-Tumor-SM-1QMR4	legacy_maf_call	0.54	2.03	0.0	15.0	0.54		old
+TCGA-BP-4969-01	KIRC-TCGA-BP-4969-Tumor-SM-1QMSS	legacy_maf_call	0.59	2.56	1.0	16.0	0.65		old
+TCGA-BP-4976-01	KIRC-TCGA-BP-4976-Tumor-SM-1QMSI	legacy_maf_call	0.67	2.09	0.0	12.0	0.68		old
+TCGA-BP-4982-01	KIRC-TCGA-BP-4982-Tumor-SM-1QMQT	legacy_maf_call	0.46	2.0	0.0	18.0	0.46		old
+TCGA-BP-4986-01	KIRC-TCGA-BP-4986-Tumor-SM-1QMRU	legacy_maf_call	0.45	3.72	1.0	31.0	0.6		old
+TCGA-BP-4988-01	KIRC-TCGA-BP-4988-Tumor-SM-1QMSJ	legacy_maf_call	0.23	2.05	0.0	46.0	0.24		old
+TCGA-BP-4993-01	KIRC-TCGA-BP-4993-Tumor-SM-1PAUX	legacy_maf_call	0.66	1.93	0.0	12.0	0.65		old
+TCGA-BP-4995-01	KIRC-TCGA-BP-4995-Tumor-SM-1QMRJ	legacy_maf_call	0.7	1.95	0.0	11.0	0.7		old
+TCGA-BP-5001-01	KIRC-TCGA-BP-5001-Tumor-SM-1QMSV	legacy_maf_call	0.72	2.06	0.0	11.0	0.72		old
+TCGA-BP-5006-01	KIRC-TCGA-BP-5006-Tumor-SM-1QMQV	legacy_maf_call	0.49	1.99	0.0	17.0	0.49		old
+TCGA-BP-5009-01	KIRC-TCGA-BP-5009-Tumor-SM-1QMRW	legacy_maf_call	0.38	2.06	0.0	25.0	0.38		old
+TCGA-BP-5168-01	KIRC-TCGA-BP-5168-Tumor-SM-1PAVM	legacy_maf_call	0.6	2.03	0.0	14.0	0.6		old
+TCGA-BP-5181-01	KIRC-TCGA-BP-5181-Tumor-SM-1PHGZ	legacy_maf_call	0.68	1.94	0.0	12.0	0.67		old
+TCGA-BP-5182-01	KIRC-TCGA-BP-5182-Tumor-SM-1PHHC	legacy_maf_call	0.27	3.88	1.0	49.0	0.42		old
+TCGA-BP-5199-01	KIRC-TCGA-BP-5199-Tumor-SM-1PHGP	legacy_maf_call	0.49	3.85	1.0	30.0	0.65		old
+TCGA-BQ-5884-01	KIRP-TCGA-BQ-5884-Tumor-SM-1UUZR	maf_call	0.53	2.05	0.0	16.0	0.53		old
+TCGA-BQ-7045-01	KIRP-TCGA-BQ-7045-Tumor-SM-28WQI	maf_call	0.68	2.19	0.0	13.0	0.7		old
+TCGA-BQ-7049-01	KIRP-TCGA-BQ-7049-Tumor-SM-28WRD	maf_call	0.4	1.99	0.0	20.0	0.4		old
+TCGA-BQ-7056-01	KIRP-TCGA-BQ-7056-Tumor-SM-28WQJ	maf_call	0.83	1.95	0.0	9.0	0.83		old
+TCGA-BQ-7059-01	KIRP-TCGA-BQ-7059-Tumor-SM-28WQX	maf_call	0.49	2.08	0.0	17.0	0.5		old
+TCGA-BQ-7060-01	KIRP-TCGA-BQ-7060-Tumor-SM-28WRF	maf_call	0.69	2.19	0.0	13.0	0.7		old
+TCGA-BR-4367-01	STAD-TCGA-BR-4367-Tumor	snp_call	0.44	2.96	1.0	26.0	0.54		old
+TCGA-BS-A0UT-01	UCEC-TCGA-BS-A0UT-Tumor	maf_call	0.82	2.24	0.0	11.0	0.84		old
+TCGA-CD-A48A-01	STAD-TCGA-CD-A48A-Tumor	snp_call	0.64	4.43	2.0	27.0	0.8		old
+TCGA-CG-4460-01	STAD-TCGA-CG-4460-Tumor	snp_call	0.62	3.61	1.0	20.0	0.74		old
+TCGA-CG-4472-01	STAD-TCGA-CG-4472-Tumor	snp_call	0.5	2.54	1.0	19.0	0.56		old
+TCGA-CJ-4635-01	KIRC-TCGA-CJ-4635-Tumor	legacy_call	0.51	3.14	1.0	21.0	0.62		old
+TCGA-CJ-4642-01	KIRC-TCGA-CJ-4642-Tumor	legacy_call	0.58	1.86	0.0	13.0	0.56		old
+TCGA-CJ-4868-01	KIRC-TCGA-CJ-4868-Tumor	legacy_call	0.47	1.94	0.0	17.0	0.46		old
+TCGA-CJ-4871-01	KIRC-TCGA-CJ-4871-Tumor	legacy_call	0.59	2.0	0.0	14.0	0.59		old
+TCGA-CJ-4873-01	KIRC-TCGA-CJ-4873-Tumor	legacy_call	0.42	3.33	1.0	31.0	0.54		old
+TCGA-CJ-4874-01	KIRC-TCGA-CJ-4874-Tumor	legacy_call	0.47	2.01	0.0	17.0	0.47		old
+TCGA-CJ-4875-01	KIRC-TCGA-CJ-4875-Tumor	legacy_call	0.75	2.17	0.0	11.0	0.76		old
+TCGA-CJ-4876-01	KIRC-TCGA-CJ-4876-Tumor	legacy_call	0.62	1.95	0.0	13.0	0.61		old
+TCGA-CJ-4878-01	KIRC-TCGA-CJ-4878-Tumor	legacy_call	0.78	1.92	0.0	10.0	0.77		old
+TCGA-CJ-4881-01	KIRC-TCGA-CJ-4881-Tumor	legacy_call	0.49	2.01	0.0	17.0	0.49		old
+TCGA-CJ-4884-01	KIRC-TCGA-CJ-4884-Tumor	legacy_call	0.45	2.01	0.0	19.0	0.45		old
+TCGA-CJ-4885-01	KIRC-TCGA-CJ-4885-Tumor	legacy_call	0.77	2.21	0.0	11.0	0.78		old
+TCGA-CJ-4886-01	KIRC-TCGA-CJ-4886-Tumor	legacy_call	0.45	2.0	0.0	18.0	0.45		old
+TCGA-CJ-4887-01	KIRC-TCGA-CJ-4887-Tumor	legacy_call	0.45	2.05	0.0	19.0	0.45		old
+TCGA-CJ-4891-01	KIRC-TCGA-CJ-4891-Tumor	legacy_call	0.24	1.91	0.0	45.0	0.23		old
+TCGA-CJ-4892-01	KIRC-TCGA-CJ-4892-Tumor	legacy_call	0.52	2.01	0.0	16.0	0.52		old
+TCGA-CJ-4893-01	KIRC-TCGA-CJ-4893-Tumor	legacy_call	0.49	1.96	0.0	17.0	0.49		old
+TCGA-CJ-4894-01	KIRC-TCGA-CJ-4894-Tumor	legacy_call	0.56	1.83	0.0	14.0	0.54		old
+TCGA-CJ-4895-01	KIRC-TCGA-CJ-4895-Tumor	legacy_call	0.52	1.89	0.0	15.0	0.51		old
+TCGA-CJ-4897-01	KIRC-TCGA-CJ-4897-Tumor-SM-1PHIR	maf_call	0.4	5.04	2.0	43.0	0.62		old
+TCGA-CJ-5682-01	KIRC-TCGA-CJ-5682-Tumor	legacy_call	0.65	3.28	1.0	18.0	0.75		old
+TCGA-CM-6674-01	COAD-TCGA-CM-6674-Tumor	legacy_call	0.5	2.0	0.0	16.0	0.5		old
+TCGA-CN-4722-01	HNSC-TCGA-CN-4722-Tumor-SM-1PNJA	legacy_call	0.32	2.08	0.0	32.0	0.33		old
+TCGA-CQ-6221-01	HNSC-TCGA-CQ-6221-Tumor-SM-2HZ1Q	maf_call	0.68	1.9	0.0	11.0	0.67		old
+TCGA-CQ-7067-01	HNSC-TCGA-CQ-7067-Tumor-SM-2XW92	maf_call	0.45	2.79	1.0	23.0	0.53		old
+TCGA-CQ-A4C7-01	HNSC-TCGA-CQ-A4C7-Tumor-SM-3UTVQ	maf_call	0.39	5.87	2.0	48.0	0.65		old
+TCGA-CR-6482-01	HNSC-TCGA-CR-6482-Tumor-SM-241N8	legacy_maf_call	0.38	2.17	0.0	25.0	0.4		old
+TCGA-CV-5431-01	HNSC-TCGA-CV-5431-Tumor-SM-1RSQI	legacy_maf_call	0.35	3.31	1.0	37.0	0.47		old
+TCGA-CV-7409-01	HNSC-TCGA-CV-7409-Tumor-SM-2XW98	maf_call	0.61	3.59	2.0	20.0	0.73		old
+TCGA-CW-5587-01	KIRC-TCGA-CW-5587-Tumor	legacy_call	0.48	2.13	0.0	18.0	0.5		old
+TCGA-CW-5588-01	KIRC-TCGA-CW-5588-Tumor	legacy_call	0.38	3.71	1.0	37.0	0.53		old
+TCGA-CW-6088-01	KIRC-TCGA-CW-6088-Tumor-SM-1XMZS	legacy_call	0.58	1.9	0.0	14.0	0.56		old
+TCGA-CX-7082-01	HNSC-TCGA-CX-7082-Tumor-SM-2CL6U	maf_call	0.59	3.66	1.0	21.0	0.72		old
+TCGA-CZ-4854-01	KIRC-TCGA-CZ-4854-Tumor	legacy_call	0.61	2.54	1.0	16.0	0.67		old
+TCGA-CZ-4857-01	KIRC-TCGA-CZ-4857-Tumor	legacy_call	0.57	2.01	0.0	14.0	0.57		old
+TCGA-CZ-4858-01	KIRC-TCGA-CZ-4858-Tumor	legacy_call	0.46	3.31	1.0	28.0	0.58		old
+TCGA-CZ-4860-01	KIRC-TCGA-CZ-4860-Tumor	legacy_call	0.75	3.26	1.0	16.0	0.83		old
+TCGA-CZ-4861-01	KIRC-TCGA-CZ-4861-Tumor	legacy_call	0.72	2.01	0.0	11.0	0.72		old
+TCGA-CZ-4862-01	KIRC-TCGA-CZ-4862-Tumor	legacy_call	0.42	1.95	0.0	20.0	0.41		old
+TCGA-CZ-4865-01	KIRC-TCGA-CZ-4865-Tumor	legacy_call	0.72	3.94	1.0	20.0	0.83		old
+TCGA-CZ-5987-01	KIRC-TCGA-CZ-5987-Tumor-SM-1XN15	legacy_maf_call	0.69	1.83	0.0	11.0	0.67		old
+TCGA-CZ-5989-01	KIRC-TCGA-CZ-5989-Tumor-SM-1XN1Q	legacy_maf_call	0.47	1.97	0.0	17.0	0.46		old
+TCGA-D1-A168-01	UCEC-TCGA-D1-A168-Tumor	maf_call	0.85	2.29	0.0	10.0	0.87		old
+TCGA-D1-A16D-01	UCEC-TCGA-D1-A16D-Tumor	maf_call	0.6	2.0	0.0	14.0	0.6		old
+TCGA-D1-A175-01	UCEC-TCGA-D1-A175-Tumor	legacy_call	0.8	2.0	0.0	10.0	0.8		old
+TCGA-D1-A3JP-01	UCEC-TCGA-D1-A3JP-Tumor	snp_call	0.44	2.89	1.0	25.0	0.54		old
+TCGA-D3-A5GR-01	SKCM-TCGA-D3-A5GR-Tumor-SM-4AI7H	maf_call	0.45	2.04	0.0	19.0	0.46		old
+TCGA-D8-A146-01	WU-BRCA-TCGA-D8-A146-01A-31D-A10Y-09	maf_call	0.37	3.96	2.0	39.0	0.54		old
+TCGA-D8-A1XD-01	BRCA-TCGA-D8-A1XD-Tumor	snp_call	0.78	2.0	0.0	10.0	0.78		old
+TCGA-D9-A1X3-01	SKCM-TCGA-D9-A1X3-Tumor-SM-2EDIV	maf_call	0.97	1.94	0.0	8.0	0.97		old
+TCGA-DB-5279-01	LGG-TCGA-DB-5279-Tumor-SM-1QIEL	maf_call	0.83	3.54	1.0	16.0	0.9		old
+TCGA-DC-6156-01	READ-TCGA-DC-6156-Tumor	legacy_call	0.44	3.58	2.0	31.0	0.58		old
+TCGA-DD-A1EA-01	LIHC-TCGA-DD-A1EA-Tumor	maf_call	0.75	2.15	0.0	11.0	0.77		old
+TCGA-DH-5141-01	LGG-TCGA-DH-5141-Tumor-SM-1QIFI	maf_call	0.79	1.95	0.0	10.0	0.78		old
+TCGA-DJ-A13L-01	THCA-TCGA-DJ-A13L-Tumor-SM-31KVJ	maf_call	0.47	1.96	0.0	17.0	0.46		old
+TCGA-DJ-A3UO-01	THCA-TCGA-DJ-A3UO-Tumor-SM-35Q27	maf_call	0.79	1.99	0.0	10.0	0.79		old
+TCGA-DQ-7590-01	HNSC-TCGA-DQ-7590-Tumor-SM-2XW9S	maf_call	0.55	1.93	0.0	14.0	0.55		old
+TCGA-DQ-7594-01	HNSC-TCGA-DQ-7594-Tumor-SM-2XWA3	maf_call	0.49	1.9	0.0	16.0	0.48		old
+TCGA-DQ-7595-01	HNSC-TCGA-DQ-7595-Tumor-SM-2XW93	maf_call	0.59	1.9	0.0	13.0	0.57		old
+TCGA-DU-5874-01	LGG-TCGA-DU-5874-Tumor-SM-1Y4BU	maf_call	0.96	1.93	0.0	8.0	0.95		old
+TCGA-DU-7290-01	LGG-TCGA-DU-7290-Tumor-SM-2EL9A	maf_call	0.68	1.95	0.0	12.0	0.67		old
+TCGA-DV-5568-01	KIRC-TCGA-DV-5568-Tumor	legacy_call	0.56	2.02	0.0	15.0	0.56		old
+TCGA-DV-5569-01	KIRC-TCGA-DV-5569-Tumor	legacy_call	0.62	2.01	0.0	13.0	0.62		old
+TCGA-DV-5573-01	KIRC-TCGA-DV-5573-Tumor	legacy_call	0.55	2.0	0.0	15.0	0.55		old
+TCGA-DV-5575-01	KIRC-TCGA-DV-5575-Tumor	legacy_call	0.56	1.9	0.0	14.0	0.55		old
+TCGA-DV-5576-01	KIRC-TCGA-DV-5576-Tumor	legacy_call	0.44	3.92	1.0	33.0	0.61		old
+TCGA-DW-5561-01	KIRP-TCGA-DW-5561-Tumor-SM-1UV1E	maf_call	0.88	2.4	0.0	11.0	0.9		old
+TCGA-DW-7834-01	KIRP-TCGA-DW-7834-Tumor-SM-2O13B	maf_call	0.65	2.12	0.0	13.0	0.66		old
+TCGA-DY-A1DE-01	READ-TCGA-DY-A1DE-Tumor	legacy_call	0.75	3.09	1.0	15.0	0.82		old
+TCGA-E2-A10E-01	BRCA-TCGA-E2-A10E-Tumor	snp_call	0.86	1.95	0.0	9.0	0.85		old
+TCGA-E9-A1N6-01	BRCA-TCGA-E9-A1N6-Tumor	snp_call	0.49	3.67	1.0	28.0	0.64		old
+TCGA-E9-A1RD-01	WU-BRCA-TCGA-E9-A1RD-01A-11D-A159-09	maf_call	0.65	3.15	1.0	17.0	0.74		old
+TCGA-EE-A2A6-01	SKCM-TCGA-EE-A2A6-Tumor-SM-2EDJZ	maf_call	0.55	2.19	0.0	16.0	0.57		old
+TCGA-EF-5831-01	READ-TCGA-EF-5831-Tumor	legacy_call	0.63	3.11	1.0	18.0	0.73		old
+TCGA-EI-6883-01	READ-TCGA-EI-6883-Tumor	legacy_call	0.8	2.18	0.0	11.0	0.81		old
+TCGA-EJ-7312-01	PRAD-TCGA-EJ-7312-Tumor-SM-4WPLG	maf_call	0.76	1.89	0.0	10.0	0.74		old
+TCGA-EL-A3D5-01	THCA-TCGA-EL-A3D5-Tumor-SM-2HRM6	maf_call	0.77	1.98	0.0	10.0	0.77		old
+TCGA-EL-A3GU-01	THCA-TCGA-EL-A3GU-Tumor-SM-2SK2B	maf_call	0.77	2.05	0.0	11.0	0.78		old
+TCGA-EL-A3H5-01	THCA-TCGA-EL-A3H5-Tumor-SM-2HRLD	maf_call	0.51	2.03	0.0	16.0	0.51		old
+TCGA-EM-A22N-01	THCA-TCGA-EM-A22N-Tumor-SM-29SSJ	maf_call	0.57	3.35	1.0	20.0	0.69		old
+TCGA-EM-A22Q-01	THCA-TCGA-EM-A22Q-Tumor-SM-29SSA	maf_call	0.78	1.97	0.0	10.0	0.78		old
+TCGA-EM-A2OY-01	THCA-TCGA-EM-A2OY-Tumor-SM-2HRMI	maf_call	0.85	3.18	1.0	14.0	0.9		old
+TCGA-EO-A3B0-01	UCEC-TCGA-EO-A3B0-Tumor	snp_call	0.67	2.05	0.0	12.0	0.67		old
+TCGA-ET-A25L-01	THCA-TCGA-ET-A25L-Tumor-SM-23FY7	legacy_call	0.81	1.99	0.0	10.0	0.81		old
+TCGA-ET-A25P-01	THCA-TCGA-ET-A25P-Tumor-SM-23FYG	legacy_call	0.72	2.03	0.0	11.0	0.72		old
+TCGA-ET-A3BP-01	THCA-TCGA-ET-A3BP-Tumor-SM-2EPQ4	maf_call	0.78	1.96	0.0	10.0	0.77		old
+TCGA-EU-5907-01	KIRC-TCGA-EU-5907-Tumor-SM-1XMZJ	legacy_maf_call	0.87	1.8	0.0	8.0	0.86		old
+TCGA-EW-A1OW-01	BRCA-TCGA-EW-A1OW-Tumor	snp_call	0.66	3.59	1.0	19.0	0.78		old
+TCGA-EW-A1PF-01	BRCA-TCGA-EW-A1PF-Tumor	snp_call	0.45	1.82	0.0	17.0	0.43		old
+TCGA-EW-A424-01	BRCA-TCGA-EW-A424-Tumor	snp_call	0.98	1.91	1.0	8.0	0.98		old
+TCGA-EY-A1G7-01	UCEC-TCGA-EY-A1G7-Tumor	legacy_call	0.92	2.26	0.0	10.0	0.93		old
+TCGA-EY-A1G8-01	UCEC-TCGA-EY-A1G8-Tumor	legacy_call	0.76	2.05	0.0	11.0	0.77		old
+TCGA-EY-A1GU-01	UCEC-TCGA-EY-A1GU-Tumor	legacy_call	0.81	2.07	0.0	10.0	0.81		old
+TCGA-F4-6703-01	COAD-TCGA-F4-6703-Tumor	legacy_call	0.17	2.04	0.0	65.0	0.17		old
+TCGA-FG-A4MU-01	LGG-TCGA-FG-A4MU-Tumor-SM-4CJ2S	maf_call	0.91	2.04	0.0	9.0	0.91		old
+TCGA-FY-A3WA-01	THCA-TCGA-FY-A3WA-Tumor-SM-35Q1F	maf_call	0.9	2.06	0.0	9.0	0.91		old
+TCGA-G3-A3CG-01	LIHC-TCGA-G3-A3CG-Tumor	maf_call	0.36	7.02	2.0	57.0	0.67		old
+TCGA-G4-6310-01	COAD-TCGA-G4-6310-Tumor	legacy_call	0.55	3.54	1.0	21.0	0.68		old
+TCGA-G4-6314-01	COAD-TCGA-G4-6314-Tumor	legacy_call	0.51	3.3	1.0	22.0	0.63		old
+TCGA-G4-6625-01	COAD-TCGA-G4-6625-Tumor	legacy_call	0.34	2.92	1.0	35.0	0.43		old
+TCGA-G5-6233-01	READ-TCGA-G5-6233-Tumor	legacy_call	0.57	2.65	1.0	17.0	0.64		old
+TCGA-G5-6235-01	READ-TCGA-G5-6235-Tumor	legacy_call	0.33	2.21	0.0	33.0	0.35		old
+TCGA-G5-6572-01	READ-TCGA-G5-6572-Tumor	legacy_call	0.75	2.23	0.0	12.0	0.77		old
+TCGA-G7-6795-01	KIRP-TCGA-G7-6795-Tumor-SM-28WQE	maf_call	0.7	2.4	0.0	13.0	0.74		old
+TCGA-G9-6365-01	PRAD-TCGA-G9-6365-Tumor	maf_call	0.53	1.99	0.0	15.0	0.53		old
+TCGA-HD-7917-01	HNSC-TCGA-HD-7917-Tumor-SM-2XW9E	maf_call	0.64	1.87	0.0	12.0	0.63		old
+TCGA-HF-7131-01	STAD-TCGA-HF-7131-Tumor	snp_call	0.4	3.11	1.0	31.0	0.51		old
+TCGA-HI-7169-01	PRAD-TCGA-HI-7169-Tumor-SM-2K1TJ	maf_call	0.45	2.0	0.0	18.0	0.45		old
+TCGA-HL-7533-01	HNSC-TCGA-HL-7533-Tumor-SM-2XW9J	maf_call	0.63	2.11	0.0	13.0	0.64		old
+TCGA-HR-A2OG-01	SKCM-TCGA-HR-A2OG-Tumor-SM-2EDHZ	maf_call	0.41	3.93	2.0	36.0	0.57		old
+TCGA-HR-A2OH-01	SKCM-TCGA-HR-A2OH-Tumor-SM-2EDHY	maf_call	0.43	2.06	0.0	20.0	0.43		old
+TCGA-HT-7608-01	LGG-TCGA-HT-7608-Tumor-SM-2KBCL	maf_call	0.85	1.95	0.0	9.0	0.84		old
+TCGA-HT-A619-01	LGG-TCGA-HT-A619-Tumor-SM-4EQJ7	maf_call	0.9	3.67	1.0	16.0	0.94		old
+TCGA-HT-A61B-01	LGG-TCGA-HT-A61B-Tumor-SM-4EQJG	maf_call	0.76	3.69	1.0	18.0	0.85		old
+TCGA-J7-6720-01	KIRP-TCGA-J7-6720-Tumor-SM-2O13I	maf_call	0.71	2.14	0.0	12.0	0.72		old
+TCGA-KJ-A3U4-01	UCEC-TCGA-KJ-A3U4-Tumor	snp_call	0.76	3.58	1.0	17.0	0.85		old
+TCGA-KL-8327-01	BCM-KICH-TCGA-KL-8327-01A-11D-2310-10	maf_call	0.84	3.04	1.0	14.0	0.89		old
+TCGA-KL-8333-01	BCM-KICH-TCGA-KL-8333-01A-11D-2310-10	maf_call	0.41	1.76	0.0	19.0	0.38		old
+TCGA-KL-8342-01	BCM-KICH-TCGA-KL-8342-01A-11D-2310-10	maf_call	0.86	1.68	0.0	8.0	0.84		old
+TCGA-KN-8419-01	BCM-KICH-TCGA-KN-8419-01A-11D-2310-10	maf_call	0.72	2.58	0.0	14.0	0.77		old
+TCGA-KN-8430-01	BCM-KICH-TCGA-KN-8430-01A-11D-2310-10	maf_call	0.85	1.48	0.0	7.0	0.81		old
+TCGA-LL-A442-01	BRCA-TCGA-LL-A442-Tumor	snp_call	0.99	1.99	1.0	8.0	0.99		old
+TCGA-NK-A5D1-01	LUSC-TCGA-NK-A5D1-Tumor-SM-47KHG	maf_call	0.82	3.53	1.0	16.0	0.89		old
+TCGA-P6-A5OG-01	ACC-TCGA-P6-A5OG-Tumor	maf_call	0.38	1.48	0.0	19.0	0.32		old
+TCGA-R8-A73M-01	LGG-TCGA-R8-A73M-Tumor-SM-4WPJ2	maf_call	1.0	3.87	1.0	16.0	1.0		old
+TCGA-RD-A7BW-01	STAD-TCGA-RD-A7BW-Tumor-SM-4WPA1	maf_call	0.18	1.88	0.0	60.0	0.17		old
+TCGA-T1-A6J8-01	LIHC-TCGA-T1-A6J8-Tumor	maf_call	0.8	1.82	0.0	9.0	0.78		old
+TCGA-WB-A820-01	PCPG-TCGA-WB-A820-Tumor	maf_call	0.72	1.84	0.0	10.0	0.71		old
diff --git a/experiments/crosscancer/covariate_baseline/audit_covariate_incremental_value.py b/experiments/crosscancer/covariate_baseline/audit_covariate_incremental_value.py
new file mode 100644
index 0000000..83ca9f9
--- /dev/null
+++ b/experiments/crosscancer/covariate_baseline/audit_covariate_incremental_value.py
@@ -0,0 +1,192 @@
+#!/usr/bin/env python3
+"""
+BIOP02-140 v1 — 공변량-only vs 공변량+H&E 증분가치, 폐(KRAS/EGFR/histology).
+방법론은 COVARIATE_BASELINE_PREREGISTRATION.md 에 결과를 보기 전에 고정
+(2026-08-20 정정: H&E patient_proba가 holdout에만 있어 5-fold in-holdout CV로 변경, 정정 내역은
+문서 참조 — 이 시점까지 AUROC 미계산 상태였음).
+CPU only. GPU 불요. 기존 임베딩·H&E 예측(mil_cost_results.json) 재사용, 재학습 없음.
+"""
+import csv, json, sys
+from pathlib import Path
+import numpy as np
+from sklearn.linear_model import LogisticRegression
+from sklearn.preprocessing import StandardScaler, OneHotEncoder
+from sklearn.model_selection import StratifiedKFold
+from sklearn.metrics import roc_auc_score
+
+HERE = Path(__file__).parent
+LUNG_FULL = HERE.parent / "LUNG_NSCLC" / "full"
+sys.path.insert(0, str(HERE.parent))
+from run_mil_cost import bootstrap_auc  # 기존 컨벤션 재사용 (n=1000, seed=42)
+
+ENDPOINTS = ["histology_lusc", "egfr_activating", "kras_g12c"]
+N_BOOT, SEED, N_FOLD = 1000, 42, 5
+
+
+def load():
+    labels = {r["case_id"]: r for r in csv.DictReader(open(LUNG_FULL / "patient_labels.csv"))}
+    cov = {r["case_id"]: r for r in csv.DictReader(open(HERE / "lung_covariates.csv"))}
+    mil = json.load(open(LUNG_FULL / "mil_cost_results.json"))
+    return labels, cov, mil
+
+
+def build_X(case_ids, cov, include_cohort, labels):
+    rows = []
+    for cid in case_ids:
+        c = cov[cid]
+        rows.append({
+            "purity": float(c["purity"]),
+            "purity_missing": int(c["purity_missing"]),
+            "stage": c["stage"],
+            "site": c["site"],
+            **({"cohort": labels[cid]["cohort"]} if include_cohort else {}),
+        })
+    cat_cols = ["stage", "site"] + (["cohort"] if include_cohort else [])
+    num_cols = ["purity", "purity_missing"]
+    X_cat = np.array([[r[c] for c in cat_cols] for r in rows], dtype=object)
+    X_num = np.array([[r[c] for c in num_cols] for r in rows], dtype=float)
+    return X_cat, X_num
+
+
+def oof_predict(case_ids, y, cov, labels, include_cohort, he_feat=None, seed=SEED):
+    """5-fold StratifiedKFold in-holdout, 폴드마다 4/5 학습 → 1/5 예측, pooled out-of-fold proba."""
+    case_ids = list(case_ids); y = np.array(y)
+    oof = np.zeros(len(case_ids))
+    skf = StratifiedKFold(n_splits=N_FOLD, shuffle=True, random_state=seed)
+    for tr_idx, te_idx in skf.split(case_ids, y):
+        tr_ids = [case_ids[i] for i in tr_idx]
+        te_ids = [case_ids[i] for i in te_idx]
+        Xc_tr, Xn_tr = build_X(tr_ids, cov, include_cohort, labels)
+        Xc_te, Xn_te = build_X(te_ids, cov, include_cohort, labels)
+
+        enc = OneHotEncoder(handle_unknown="ignore")
+        Xc_tr_oh = enc.fit_transform(Xc_tr).toarray()
+        Xc_te_oh = enc.transform(Xc_te).toarray()
+        scaler = StandardScaler()
+        Xn_tr_s = scaler.fit_transform(Xn_tr)
+        Xn_te_s = scaler.transform(Xn_te)
+        X_tr = np.hstack([Xc_tr_oh, Xn_tr_s])
+        X_te = np.hstack([Xc_te_oh, Xn_te_s])
+
+        if he_feat is not None:
+            f_tr = np.array([[he_feat[c]] for c in tr_ids])
+            f_te = np.array([[he_feat[c]] for c in te_ids])
+            X_tr = np.hstack([X_tr, f_tr])
+            X_te = np.hstack([X_te, f_te])
+
+        clf = LogisticRegression(max_iter=2000, C=1.0)
+        clf.fit(X_tr, y[tr_idx])
+        oof[te_idx] = clf.predict_proba(X_te)[:, 1]
+    return oof
+
+
+def paired_bootstrap_delta(y, p_cov, p_comb, n=N_BOOT, seed=SEED):
+    y = np.array(y); p_cov = np.array(p_cov); p_comb = np.array(p_comb)
+    if len(set(y)) < 2:
+        return None, None, None
+    rng = np.random.default_rng(seed)
+    base = roc_auc_score(y, p_comb) - roc_auc_score(y, p_cov)
+    deltas = []
+    for _ in range(n):
+        idx = rng.integers(0, len(y), len(y))
+        if len(set(y[idx])) < 2:
+            continue
+        deltas.append(roc_auc_score(y[idx], p_comb[idx]) - roc_auc_score(y[idx], p_cov[idx]))
+    lo, hi = (np.percentile(deltas, [2.5, 97.5]) if deltas else (None, None))
+    return round(float(base), 4), (round(float(lo), 4) if lo is not None else None), \
+           (round(float(hi), 4) if hi is not None else None)
+
+
+def main():
+    labels, cov, mil = load()
+
+    result = {"cancer": "LUNG_NSCLC", "claim_level": "hypothesis_only", "critic_status": "pending",
+              "scope": "v1 — LUNG only (BIOP02-140 pre-registered reduced scope)",
+              "method": "5-fold StratifiedKFold in-holdout CV (pre-registration addendum 2026-08-20)",
+              "endpoints": {}}
+
+    for ep in ENDPOINTS:
+        include_cohort = (ep != "histology_lusc")
+        he_proba = mil["endpoints"][ep]["patient_proba"]
+        eval_ids = sorted(c for c in he_proba if c in labels and c in cov)
+        y_eval = [int(labels[c][ep]) for c in eval_ids]
+        n_pos = sum(y_eval)
+        print(f"[{ep}] holdout n={len(eval_ids)} n_pos={n_pos} include_cohort={include_cohort}")
+
+        p_cov = oof_predict(eval_ids, y_eval, cov, labels, include_cohort)
+        cov_auc, cov_lo, cov_hi = bootstrap_auc(y_eval, p_cov, n=N_BOOT, seed=SEED)
+
+        he_feat = {c: he_proba[c] for c in eval_ids}
+        p_comb = oof_predict(eval_ids, y_eval, cov, labels, include_cohort, he_feat=he_feat)
+        comb_auc, comb_lo, comb_hi = bootstrap_auc(y_eval, p_comb, n=N_BOOT, seed=SEED)
+
+        he_auc = mil["endpoints"][ep]["real"]["auc"]  # mil_cost_results.json 원값 인용(재계산 안 함)
+        delta, d_lo, d_hi = paired_bootstrap_delta(y_eval, p_cov, p_comb)
+
+        cohort_only_auc = None
+        if ep != "histology_lusc":
+            y_arr = np.array(y_eval)
+            oof_c = np.zeros(len(eval_ids))
+            skf = StratifiedKFold(n_splits=N_FOLD, shuffle=True, random_state=SEED)
+            for tr_idx, te_idx in skf.split(eval_ids, y_arr):
+                tr_ids = [eval_ids[i] for i in tr_idx]; te_ids = [eval_ids[i] for i in te_idx]
+                Xtr = np.array([[1.0 if labels[c]["cohort"] == "LUSC" else 0.0] for c in tr_ids])
+                Xte = np.array([[1.0 if labels[c]["cohort"] == "LUSC" else 0.0] for c in te_ids])
+                clf = LogisticRegression(max_iter=1000).fit(Xtr, y_arr[tr_idx])
+                oof_c[te_idx] = clf.predict_proba(Xte)[:, 1]
+            cohort_only_auc, _, _ = bootstrap_auc(y_eval, oof_c, n=N_BOOT, seed=SEED)
+
+        if n_pos < 25:
+            verdict = "판정 불가 (n_pos<25, 프로젝트 exploratory 기준 미달)"
+        elif d_lo is not None and d_lo > 0:
+            verdict = "🟢 유지"
+        elif d_lo is not None and d_lo <= 0 <= (d_hi or 0):
+            verdict = "🟡 강등 후보"
+        else:
+            verdict = "판정 불가 (bootstrap 실패)"
+        if cov_auc is not None and he_auc is not None and cov_auc > he_auc:
+            verdict += " + 🔴 공변량-only가 H&E 이상(본문 명시 대상)"
+
+        result["endpoints"][ep] = {
+            "n_holdout": len(eval_ids), "n_pos": n_pos, "include_cohort_covariate": include_cohort,
+            "he_only_auc_cited_from_mil_cost": he_auc,
+            "covariate_only_auc": {"auc": cov_auc, "ci95": [cov_lo, cov_hi]},
+            "combined_auc": {"auc": comb_auc, "ci95": [comb_lo, comb_hi]},
+            "delta_auroc_combined_minus_covariate": {"delta": delta, "ci95": [d_lo, d_hi]},
+            "cohort_only_auc_single_covariate_check": cohort_only_auc,
+            "verdict": verdict,
+        }
+        print(f"  covariate-only={cov_auc} ({cov_lo}-{cov_hi})  combined={comb_auc} ({comb_lo}-{comb_hi})"
+              f"  delta={delta} ({d_lo}-{d_hi})  he_only(cited)={he_auc}  cohort_only={cohort_only_auc}")
+        print(f"  verdict: {verdict}")
+
+    purity_strat = {}
+    for ep in ["egfr_activating", "kras_g12c"]:
+        he_proba = mil["endpoints"][ep]["patient_proba"]
+        eval_ids = sorted(c for c in he_proba if c in labels and c in cov)
+        purities = np.array([float(cov[c]["purity"]) for c in eval_ids])
+        med = float(np.median(purities))
+        high_ids = [c for c, p in zip(eval_ids, purities) if p >= med]
+        low_ids = [c for c, p in zip(eval_ids, purities) if p < med]
+        strat = {}
+        for name, ids in [("high_purity", high_ids), ("low_purity", low_ids)]:
+            y = [int(labels[c][ep]) for c in ids]
+            npos = sum(y)
+            if npos < 5:
+                strat[name] = {"n": len(ids), "n_pos": npos, "note": "검정력 부족(n_pos<5), 판정 불가 — 사전등록"}
+                continue
+            p = [he_proba[c] for c in ids]
+            auc, lo, hi = bootstrap_auc(y, p, n=N_BOOT, seed=SEED)
+            strat[name] = {"n": len(ids), "n_pos": npos, "auc": auc, "ci95": [lo, hi]}
+        purity_strat[ep] = {"holdout_median_purity": round(med, 4), **strat}
+        print(f"[purity-strat:{ep}] median={med:.3f} -> {strat}")
+
+    result["purity_stratification"] = purity_strat
+
+    out = HERE / "covariate_incremental_value_results.json"
+    json.dump(result, open(out, "w"), indent=2, ensure_ascii=False)
+    print(f"Saved {out}\nDONE_BIOP02-140_v1")
+
+
+if __name__ == "__main__":
+    main()
diff --git a/experiments/crosscancer/covariate_baseline/covariate_incremental_value_results.json b/experiments/crosscancer/covariate_baseline/covariate_incremental_value_results.json
new file mode 100644
index 0000000..3aca1b5
--- /dev/null
+++ b/experiments/crosscancer/covariate_baseline/covariate_incremental_value_results.json
@@ -0,0 +1,140 @@
+{
+  "cancer": "LUNG_NSCLC",
+  "claim_level": "hypothesis_only",
+  "critic_status": "pending",
+  "scope": "v1 — LUNG only (BIOP02-140 pre-registered reduced scope)",
+  "method": "5-fold StratifiedKFold in-holdout CV (pre-registration addendum 2026-08-20)",
+  "endpoints": {
+    "histology_lusc": {
+      "n_holdout": 271,
+      "n_pos": 153,
+      "include_cohort_covariate": false,
+      "he_only_auc_cited_from_mil_cost": 0.939,
+      "covariate_only_auc": {
+        "auc": 0.5859,
+        "ci95": [
+          0.5161,
+          0.6537
+        ]
+      },
+      "combined_auc": {
+        "auc": 0.9308,
+        "ci95": [
+          0.8954,
+          0.9622
+        ]
+      },
+      "delta_auroc_combined_minus_covariate": {
+        "delta": 0.345,
+        "ci95": [
+          0.2781,
+          0.4147
+        ]
+      },
+      "cohort_only_auc_single_covariate_check": null,
+      "verdict": "🟢 유지"
+    },
+    "egfr_activating": {
+      "n_holdout": 271,
+      "n_pos": 15,
+      "include_cohort_covariate": true,
+      "he_only_auc_cited_from_mil_cost": 0.8518,
+      "covariate_only_auc": {
+        "auc": 0.8161,
+        "ci95": [
+          0.7004,
+          0.9064
+        ]
+      },
+      "combined_auc": {
+        "auc": 0.881,
+        "ci95": [
+          0.7664,
+          0.9524
+        ]
+      },
+      "delta_auroc_combined_minus_covariate": {
+        "delta": 0.0648,
+        "ci95": [
+          0.0064,
+          0.1267
+        ]
+      },
+      "cohort_only_auc_single_covariate_check": 0.7173,
+      "verdict": "판정 불가 (n_pos<25, 프로젝트 exploratory 기준 미달)"
+    },
+    "kras_g12c": {
+      "n_holdout": 271,
+      "n_pos": 14,
+      "include_cohort_covariate": true,
+      "he_only_auc_cited_from_mil_cost": 0.6809,
+      "covariate_only_auc": {
+        "auc": 0.8017,
+        "ci95": [
+          0.738,
+          0.8544
+        ]
+      },
+      "combined_auc": {
+        "auc": 0.8013,
+        "ci95": [
+          0.7385,
+          0.8549
+        ]
+      },
+      "delta_auroc_combined_minus_covariate": {
+        "delta": -0.0004,
+        "ci95": [
+          -0.0086,
+          0.0066
+        ]
+      },
+      "cohort_only_auc_single_covariate_check": 0.7795,
+      "verdict": "판정 불가 (n_pos<25, 프로젝트 exploratory 기준 미달) + 🔴 공변량-only가 H&E 이상(본문 명시 대상)"
+    }
+  },
+  "purity_stratification": {
+    "egfr_activating": {
+      "holdout_median_purity": 0.46,
+      "high_purity": {
+        "n": 140,
+        "n_pos": 5,
+        "auc": 0.8622,
+        "ci95": [
+          0.6704,
+          0.9854
+        ]
+      },
+      "low_purity": {
+        "n": 131,
+        "n_pos": 10,
+        "auc": 0.8421,
+        "ci95": [
+          0.6771,
+          0.9736
+        ]
+      }
+    },
+    "kras_g12c": {
+      "holdout_median_purity": 0.46,
+      "high_purity": {
+        "n": 140,
+        "n_pos": 7,
+        "auc": 0.7562,
+        "ci95": [
+          0.6165,
+          0.8817
+        ]
+      },
+      "low_purity": {
+        "n": 131,
+        "n_pos": 7,
+        "auc": 0.595,
+        "ci95": [
+          0.4179,
+          0.7618
+        ]
+      }
+    }
+  }
+}
\ No newline at end of file
diff --git a/experiments/crosscancer/covariate_baseline/fetch_covariates_lung.py b/experiments/crosscancer/covariate_baseline/fetch_covariates_lung.py
new file mode 100644
index 0000000..96ac809
--- /dev/null
+++ b/experiments/crosscancer/covariate_baseline/fetch_covariates_lung.py
@@ -0,0 +1,117 @@
+#!/usr/bin/env python3
+"""
+BIOP02-140 v1 — 폐 공변량(purity/stage/site) fetch. 판정 없음, 원값 join만.
+COVARIATE_BASELINE_PREREGISTRATION.md 에서 정한 출처·처리 규칙을 그대로 구현한다.
+
+출력: lung_covariates.csv (case_id, purity, purity_missing, stage, site)
+grade는 커버리지 0%를 여기서 실측·로그로 남기고 제외(사전등록에 이미 명시).
+"""
+import csv, json, sys, urllib.request
+from pathlib import Path
+from collections import Counter
+
+HERE = Path(__file__).parent
+LUNG_FULL = HERE.parent / "LUNG_NSCLC" / "full"
+ABSOLUTE_URL = "https://api.gdc.cancer.gov/data/4f277128-f793-4354-a13d-30cc7fe9f6b5"
+ABSOLUTE_LOCAL = HERE / "TCGA_mastercalls.abs_tables_JHU_UCSC.txt"
+
+
+def post(path, body):
+    for a in range(4):
+        try:
+            req = urllib.request.Request(
+                f"https://www.cbioportal.org/api{path}", data=json.dumps(body).encode(),
+                headers={"Accept": "application/json", "Content-Type": "application/json"}, method="POST")
+            return json.load(urllib.request.urlopen(req, timeout=60))
+        except Exception as e:
+            print(f"  cbio POST {path} retry{a+1}: {e}"); import time; time.sleep(6 * (a + 1))
+    raise RuntimeError(f"cbio POST failed {path}")
+
+
+def stage_to_ordinal(v):
+    if not v or v in ("[Not Available]", "[Not Applicable]", "[Unknown]", "[Discrepancy]"):
+        return "missing"
+    v = v.upper().replace("STAGE ", "").strip()
+    for pfx in ("IV", "III", "II", "I"):  # 긴 접두어부터(짧은 "I"가 "IV"/"III"/"II"를 먼저 먹지 않도록)
+        if v.startswith(pfx):
+            return pfx
+    return "missing"
+
+
+def site_to_lobe(v):
+    if not v or not v.startswith("C34"):
+        return "missing"
+    return v  # C34.0..C34.9, keep as-is per pre-registration
+
+
+def main():
+    # --- cohort/patients we need covariates for (all labeled lung patients) ---
+    labels = {r["case_id"]: r for r in csv.DictReader(open(LUNG_FULL / "patient_labels.csv"))}
+    case_ids = set(labels)
+    print(f"target patients: {len(case_ids)}")
+
+    # --- purity (ABSOLUTE, pan-cancer file, already downloaded) ---
+    if not ABSOLUTE_LOCAL.exists():
+        raise SystemExit(f"missing {ABSOLUTE_LOCAL} — download from {ABSOLUTE_URL} first")
+    purity = {}
+    with open(ABSOLUTE_LOCAL) as fh:
+        r = csv.DictReader(fh, delimiter="\t")
+        for row in r:
+            sample = row["sample"]  # e.g. TCGA-05-4249-01A-01D-...
+            pid = "-".join(sample.split("-")[:3])
+            if pid not in case_ids:
+                continue
+            if pid in purity:
+                continue  # first matching tumor sample only (pre-registered)
+            pv = row["purity"]
+            try:
+                purity[pid] = float(pv)
+            except (TypeError, ValueError):
+                pass
+    print(f"purity matched: {len(purity)}/{len(case_ids)}")
+
+    # --- stage + site (cBioPortal, PATIENT-level) ---
+    attrs = ["AJCC_PATHOLOGIC_TUMOR_STAGE", "GRADE", "ICD_O_3_SITE"]
+    stage_raw, site_raw, grade_raw = {}, {}, {}
+    for study in ["luad_tcga_pan_can_atlas_2018", "lusc_tcga_pan_can_atlas_2018"]:
+        d = post(f"/studies/{study}/clinical-data/fetch?clinicalDataType=PATIENT", {"attributeIds": attrs})
+        for x in d:
+            pid = x["patientId"]
+            if pid not in case_ids:
+                continue
+            if x["clinicalAttributeId"] == "AJCC_PATHOLOGIC_TUMOR_STAGE":
+                stage_raw[pid] = x["value"]
+            elif x["clinicalAttributeId"] == "ICD_O_3_SITE":
+                site_raw[pid] = x["value"]
+            elif x["clinicalAttributeId"] == "GRADE":
+                grade_raw[pid] = x["value"]
+    print(f"stage matched: {len(stage_raw)}/{len(case_ids)}, site matched: {len(site_raw)}/{len(case_ids)}")
+    print(f"grade matched: {len(grade_raw)}/{len(case_ids)} "
+          f"({'0% 확인 — 사전등록대로 v1 제외' if len(grade_raw) == 0 else 'WARNING: 사전등록 가정(0%)과 다름, grade 포함 여부 재검토 필요'})")
+
+    # --- write covariates csv ---
+    out = HERE / "lung_covariates.csv"
+    rows = []
+    for cid in sorted(case_ids):
+        p = purity.get(cid)
+        rows.append({
+            "case_id": cid,
+            "purity": round(p, 4) if p is not None else 0.0,
+            "purity_missing": 0 if p is not None else 1,
+            "stage": stage_to_ordinal(stage_raw.get(cid, "")),
+            "site": site_to_lobe(site_raw.get(cid, "")),
+        })
+    with open(out, "w", newline="") as fh:
+        w = csv.DictWriter(fh, fieldnames=list(rows[0].keys()))
+        w.writeheader(); w.writerows(rows)
+    print(f"wrote {out} ({len(rows)} rows)")
+
+    stage_dist = Counter(r["stage"] for r in rows)
+    site_dist = Counter(r["site"] for r in rows)
+    print("stage dist:", dict(stage_dist))
+    print("site dist:", dict(site_dist))
+    print("DONE_FETCH_COVARIATES_LUNG")
+
+
+if __name__ == "__main__":
+    main()
diff --git a/experiments/crosscancer/covariate_baseline/lung_covariates.csv b/experiments/crosscancer/covariate_baseline/lung_covariates.csv
new file mode 100644
index 0000000..a27b2a6
--- /dev/null
+++ b/experiments/crosscancer/covariate_baseline/lung_covariates.csv
@@ -0,0 +1,1051 @@
+case_id,purity,purity_missing,stage,site
+TCGA-05-4244,0.44,0,IV,C34.3
+TCGA-05-4249,0.49,0,I,C34.3
+TCGA-05-4250,0.5,0,III,C34.3
+TCGA-05-4382,0.21,0,I,C34.1
+TCGA-05-4384,0.49,0,III,C34.3
+TCGA-05-4389,0.48,0,I,C34.1
+TCGA-05-4390,0.57,0,I,C34.1
+TCGA-05-4395,0.61,0,III,C34.1
+TCGA-05-4396,0.82,0,III,C34.3
+TCGA-05-4397,0.87,0,II,C34.2
+TCGA-05-4398,0.33,0,III,C34.1
+TCGA-05-4402,0.44,0,IV,C34.3
+TCGA-05-4403,0.46,0,I,C34.1
+TCGA-05-4405,0.38,0,I,C34.3
+TCGA-05-4410,0.24,0,I,C34.1
+TCGA-05-4415,0.67,0,III,C34.3
+TCGA-05-4417,0.4,0,I,C34.1
+TCGA-05-4418,0.55,0,III,C34.3
+TCGA-05-4420,0.59,0,I,C34.3
+TCGA-05-4422,0.62,0,I,C34.3
+TCGA-05-4424,0.24,0,II,C34.1
+TCGA-05-4425,0.61,0,IV,C34.2
+TCGA-05-4426,0.7,0,I,C34.3
+TCGA-05-4427,0.47,0,II,C34.1
+TCGA-05-4430,0.2,0,I,C34.3
+TCGA-05-4432,0.36,0,II,C34.1
+TCGA-05-4433,0.62,0,I,C34.3
+TCGA-05-4434,0.45,0,IV,C34.3
+TCGA-05-5423,0.59,0,II,C34.9
+TCGA-05-5425,0.71,0,II,C34.9
+TCGA-05-5428,0.63,0,II,C34.9
+TCGA-05-5429,0.82,0,III,C34.9
+TCGA-05-5715,0.73,0,I,C34.1
+TCGA-17-Z000,0.0,1,missing,missing
+TCGA-17-Z001,0.0,1,missing,missing
+TCGA-17-Z002,0.0,1,missing,missing
+TCGA-17-Z003,0.0,1,missing,missing
+TCGA-17-Z004,0.0,1,missing,missing
+TCGA-17-Z005,0.0,1,missing,missing
+TCGA-17-Z007,0.0,1,missing,missing
+TCGA-17-Z009,0.0,1,missing,missing
+TCGA-17-Z010,0.0,1,missing,missing
+TCGA-17-Z011,0.0,1,missing,missing
+TCGA-17-Z013,0.0,1,missing,missing
+TCGA-17-Z014,0.0,1,missing,missing
+TCGA-17-Z015,0.0,1,missing,missing
+TCGA-17-Z016,0.0,1,missing,missing
+TCGA-17-Z017,0.0,1,missing,missing
+TCGA-17-Z018,0.0,1,missing,missing
+TCGA-17-Z019,0.0,1,missing,missing
+TCGA-17-Z020,0.0,1,missing,missing
+TCGA-17-Z021,0.0,1,missing,missing
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