APMODE/CITATION.cff at main · biostochastics/APMODE · GitHub

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cff-version: 1.2.0
message: "If you use APMODE in your research, please cite it as below."
type: software
title: "APMODE: Adaptive Pharmacokinetic Model Discovery Engine"
abstract: >
  APMODE is a governed meta-system that composes five population PK modeling
  paradigms — classical NLME (nlmixr2), automated structural search, hybrid
  mechanistic-NODE (JAX/Diffrax), agentic LLM model construction, and
  Bayesian Stan/Torsten — under a unified evidence-gate funnel with fully
  reproducible JSON bundles.
authors:
  - family-names: Kornilov
    given-names: Sergey A.
    affiliation: Biostochastics
version: 0.6.1-rc1
date-released: 2026-04-17
license: GPL-2.0-or-later
repository-code: "https://github.com/biostochastics/apmode"
url: "https://github.com/biostochastics/apmode"
keywords:
  - pharmacokinetics
  - population-pk
  - nlme
  - nlmixr2
  - neural-ode
  - bayesian
  - stan
  - agentic-llm
  - model-discovery
  - reproducibility