Can pbx use polished genome files as input?

[yweii]

Hi, I'm new to pbx.
Can pbx use the polished genome files as input?
Here is the reference
https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.17877

[njbooher]

Not easily.

If you just want to extract TALE sequences from a finished genome then AnnoTALE would probably be better.

http://www.jstacs.de/index.php/AnnoTALE

[yweii]

Hi, thank you for your prompt reply.
I'm sorry that I wasn't able to reply to you in a timely manner.
I also want to ask how determine if the smaller circular contigs are plasmids?