From fa7100a3cb271d8c70ff920dc33f3f1b54a4464c Mon Sep 17 00:00:00 2001 From: Rima-Waleed <113367837+Rima-Waleed@users.noreply.github.com> Date: Thu, 10 Apr 2025 18:22:10 +0400 Subject: [PATCH 1/6] Adding new histocytic and stroma-derived neoplasm codes --- .../resource_uri_to_oncocode_mapping.txt | 21 ++++++++++++++++++- 1 file changed, 20 insertions(+), 1 deletion(-) diff --git a/resources/resource_uri_to_oncocode_mapping.txt b/resources/resource_uri_to_oncocode_mapping.txt index 98d356c1..506467a3 100644 --- a/resources/resource_uri_to_oncocode_mapping.txt +++ b/resources/resource_uri_to_oncocode_mapping.txt @@ -953,4 +953,23 @@ ONC000921 hasCode ARCH ONC000922 hasCode SDNLT ONC000923 hasCode MFBT ONC000924 hasCode IPMA -ONC000925 hasCode XGA \ No newline at end of file +ONC000925 hasCode XGA +ONC000926 hasCode MDCN +ONC000927 hasCode FDCN +ONC000928 hasCode EBVIFDCS +ONC000929 hasCode SSVST +ONC000930 hasCode SVST +ONC000931 hasCode LCA +ONC000932 hasCode SH +ONC000933 hasCode SANTS +ONC000934 hasCode PDCN +ONC000935 hasCode MPDCP +ONC000936 hasCode LCDN +ONC000937 hasCode LCN +ONC000938 hasCode LCHD +ONC000939 hasCode PLCS +ONC000940 hasCode SLCS +ONC000941 hasCode ODCN +ONC000942 hasCode HMN +ONC000943 hasCode HN +ONC000944 hasCode ALKH \ No newline at end of file From e98ae02ba1e67bb9481caf8fb43a3ea0f0a27aef Mon Sep 17 00:00:00 2001 From: Rima-Waleed <113367837+Rima-Waleed@users.noreply.github.com> Date: Tue, 22 Apr 2025 15:35:39 -0400 Subject: [PATCH 2/6] Update resource_uri_to_oncocode_mapping.txt --- .../resource_uri_to_oncocode_mapping.txt | 113 +++++++++++++++++- 1 file changed, 112 insertions(+), 1 deletion(-) diff --git a/resources/resource_uri_to_oncocode_mapping.txt b/resources/resource_uri_to_oncocode_mapping.txt index 506467a3..5c4572b5 100644 --- a/resources/resource_uri_to_oncocode_mapping.txt +++ b/resources/resource_uri_to_oncocode_mapping.txt @@ -972,4 +972,115 @@ ONC000940 hasCode SLCS ONC000941 hasCode ODCN ONC000942 hasCode HMN ONC000943 hasCode HN -ONC000944 hasCode ALKH \ No newline at end of file +ONC000944 hasCode ALKH +ONC000945 hasCode MYPN +ONC000945 hasRevocation ONC000829 +ONC000946 hasCode MPL +ONC000947 hasCode CH +ONC000948 hasCode CHIP +ONC000949 hasCode VS +ONC000950 hasCode CCUS +ONC000951 hasCode CEL +ONC000951 hasRevocation ONC000758 +ONC000952 hasCode PMFP +ONC000952 hasRevocation ONC000756 +ONC000953 hasCode PMFF +ONC000953 hasRevocation ONC000757 +ONC000954 hasCode MPCM +ONC000955 hasCode DCM +ONC000956 hasCode MC +ONC000957 hasCode BMM +ONC000958 hasCode MDN +ONC000958 hasRevocation ONC000050 +ONC000959 hasCode MDNGA +ONC000960 hasCode MDNLB5QD +ONC000960 hasRevocation ONC000771 +ONC000961 hasCode MDNLBSF3B1 +ONC000962 hasCode MDNBTP3 +ONC000963 hasCode MDNDM +ONC000964 hasCode MDNLB +ONC000965 hasCode MDNLBSLD +ONC000965 hasRevocation ONC000765 +ONC000966 hasCode MDNLBMD +ONC000966 hasRevocation ONC000769 +ONC000967 hasCode MDNH +ONC000968 hasCode MDNIB +ONC000968 hasRevocation ONC000770 +ONC000969 hasCode MDNIB1 +ONC000969 hasRevocation ONC000837 +ONC000970 hasCode MDNIB2 +ONC000970 hasRevocation ONC000838 +ONC000971 hasCode MDNBF +ONC000972 hasCode MDNC +ONC000973 hasCode CMDNLB +ONC000973 hasRevocation ONC000773 +ONC000974 hasCode CMDNLBH +ONC000975 hasCode CMDNB +ONC000976 hasCode MDCMML +ONC000977 hasCode MPCMML +ONC000978 hasCode MDMPNN +ONC000978 hasRevocation ONC000761 +ONC000979 hasCode MDMPNSF3B1 +ONC000979 hasRevocation ONC000763 +ONC000980 hasCode AMLDGA +ONC000980 hasRevocation ONC000783 +ONC000981 hasCode AMLRBM15MRTFA +ONC000981 hasRevocation ONC000790 +ONC000982 hasCode AMLKMT2A +ONC000982 hasRevocation ONC000787 +ONC000983 hasCode AMLMECOM +ONC000983 hasRevocation ONC000789 +ONC000984 hasCode AMLNUP98 +ONC000985 hasRevocation AMLMR +ONC000985 hasCode ONC000795 +ONC000986 hasCode AMLOGA +ONC000987 hasCode AMLCBFA2T3GLIS2 +ONC000988 hasCode AMLKAT6ACREBBP +ONC000989 hasCode AMLFUSERG +ONC000990 hasCode AMLMNX1ETV6 +ONC000991 hasCode AMLNPM1MLF1 +ONC000992 hasCode AMLDD +ONC000992 hasRevocation ONC000796 +ONC000993 hasCode AMCL +ONC000993 hasRevocation ONC000042 +ONC000994 hasCode AEL +ONC000994 hasRevocation ONC000801 +ONC000995 hasCode SMNS +ONC000996 hasCode MNPAPC +ONC000997 hasCode MNPCT +ONC000997 hasRevocation ONC000809 +ONC000998 hasCode MDNPCT +ONC000998 hasRevocation ONC000840 +ONC000999 hasCode MDMPNPCT +ONC001000 hasCode ACMPCT +ONC001000 hasRevocation ONC000841 +ONC001001 hasCode MLN +ONC001002 hasCode MLNETKGF +ONC001002 hasRevocation ONC000816 +ONC001003 hasCode MLNJAK2 +ONC001003 hasRevocation ONC000820 +ONC001004 hasCode MLNFLT3 +ONC001005 hasCode MLNETV6ABL1 +ONC001006 hasCode MLNOTKFG +ONC001007 hasCode ALALDGA +ONC001008 hasCode ALALODGA +ONC001009 hasCode MPALZNF384 +ONC001010 hasCode ALALBCL11B +ONC001011 hasCode ALALDI +ONC001012 hasCode MPALBM +ONC001012 hasRevocation ONC000814 +ONC001013 hasCode MPALTM +ONC001013 hasRevocation ONC000815 +ONC001014 hasCode MPALR +ONC001015 hasCode MPALBT +ONC001016 hasCode MPALBTM +ONC001017 hasCode MPALTMK +ONC001018 hasCode ALALNOS +ONC001019 hasCode ALMAL +ONC001019 hasCode ONC000810 +ONC001020 hasRevocation MNAGP +ONC001020 hasRevocation ONC000782 +ONC001021 hasCode AMLNPM1M +ONC001021 hasRevocation ONC000792 +ONC001022 hasCode AMLCEBPAM +ONC001022 hasRevocation ONC000791 From 5339ef0e16d6b512a5ebdfac6ad342922e4ff9dd Mon Sep 17 00:00:00 2001 From: Rima-Waleed <113367837+Rima-Waleed@users.noreply.github.com> Date: Tue, 22 Apr 2025 16:29:27 -0400 Subject: [PATCH 3/6] Update resource_uri_to_oncocode_mapping.txt AMLPCT update --- resources/resource_uri_to_oncocode_mapping.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/resources/resource_uri_to_oncocode_mapping.txt b/resources/resource_uri_to_oncocode_mapping.txt index 5c4572b5..a760ae1b 100644 --- a/resources/resource_uri_to_oncocode_mapping.txt +++ b/resources/resource_uri_to_oncocode_mapping.txt @@ -1052,7 +1052,7 @@ ONC000997 hasRevocation ONC000809 ONC000998 hasCode MDNPCT ONC000998 hasRevocation ONC000840 ONC000999 hasCode MDMPNPCT -ONC001000 hasCode ACMPCT +ONC001000 hasCode AMLPCT ONC001000 hasRevocation ONC000841 ONC001001 hasCode MLN ONC001002 hasCode MLNETKGF From 5a68695c9dc1bf84201034a559c657a205a22a9b Mon Sep 17 00:00:00 2001 From: Rima-Waleed <113367837+Rima-Waleed@users.noreply.github.com> Date: Tue, 6 May 2025 17:40:44 -0400 Subject: [PATCH 4/6] Update resource_uri_to_oncocode_mapping.txt --- resources/resource_uri_to_oncocode_mapping.txt | 4 ---- 1 file changed, 4 deletions(-) diff --git a/resources/resource_uri_to_oncocode_mapping.txt b/resources/resource_uri_to_oncocode_mapping.txt index a760ae1b..e5484b2e 100644 --- a/resources/resource_uri_to_oncocode_mapping.txt +++ b/resources/resource_uri_to_oncocode_mapping.txt @@ -1080,7 +1080,3 @@ ONC001019 hasCode ALMAL ONC001019 hasCode ONC000810 ONC001020 hasRevocation MNAGP ONC001020 hasRevocation ONC000782 -ONC001021 hasCode AMLNPM1M -ONC001021 hasRevocation ONC000792 -ONC001022 hasCode AMLCEBPAM -ONC001022 hasRevocation ONC000791 From b6cbbee46552839a5547e3b9fadd73ef225413a3 Mon Sep 17 00:00:00 2001 From: Rima-Waleed <113367837+Rima-Waleed@users.noreply.github.com> Date: Fri, 16 May 2025 13:42:09 -0400 Subject: [PATCH 5/6] Update resource_uri_to_oncocode_mapping.txt --- .../resource_uri_to_oncocode_mapping.txt | 178 +++++++----------- 1 file changed, 73 insertions(+), 105 deletions(-) diff --git a/resources/resource_uri_to_oncocode_mapping.txt b/resources/resource_uri_to_oncocode_mapping.txt index e5484b2e..9abad8d0 100644 --- a/resources/resource_uri_to_oncocode_mapping.txt +++ b/resources/resource_uri_to_oncocode_mapping.txt @@ -973,110 +973,78 @@ ONC000941 hasCode ODCN ONC000942 hasCode HMN ONC000943 hasCode HN ONC000944 hasCode ALKH -ONC000945 hasCode MYPN -ONC000945 hasRevocation ONC000829 -ONC000946 hasCode MPL -ONC000947 hasCode CH -ONC000948 hasCode CHIP -ONC000949 hasCode VS -ONC000950 hasCode CCUS +ONC000945 hasCode MPLN +ONC000946 hasCode CH +ONC000947 hasCode CHIP +ONC000948 hasCode VS +ONC000949 hasCode CCUS +ONC000950 hasCode CML +ONC000950 hasRevocation ONC000753 ONC000951 hasCode CEL ONC000951 hasRevocation ONC000758 -ONC000952 hasCode PMFP -ONC000952 hasRevocation ONC000756 -ONC000953 hasCode PMFF -ONC000953 hasRevocation ONC000757 -ONC000954 hasCode MPCM -ONC000955 hasCode DCM -ONC000956 hasCode MC -ONC000957 hasCode BMM -ONC000958 hasCode MDN -ONC000958 hasRevocation ONC000050 -ONC000959 hasCode MDNGA -ONC000960 hasCode MDNLB5QD -ONC000960 hasRevocation ONC000771 -ONC000961 hasCode MDNLBSF3B1 -ONC000962 hasCode MDNBTP3 -ONC000963 hasCode MDNDM -ONC000964 hasCode MDNLB -ONC000965 hasCode MDNLBSLD -ONC000965 hasRevocation ONC000765 -ONC000966 hasCode MDNLBMD -ONC000966 hasRevocation ONC000769 -ONC000967 hasCode MDNH -ONC000968 hasCode MDNIB -ONC000968 hasRevocation ONC000770 -ONC000969 hasCode MDNIB1 -ONC000969 hasRevocation ONC000837 -ONC000970 hasCode MDNIB2 -ONC000970 hasRevocation ONC000838 -ONC000971 hasCode MDNBF -ONC000972 hasCode MDNC -ONC000973 hasCode CMDNLB -ONC000973 hasRevocation ONC000773 -ONC000974 hasCode CMDNLBH -ONC000975 hasCode CMDNB -ONC000976 hasCode MDCMML -ONC000977 hasCode MPCMML -ONC000978 hasCode MDMPNN -ONC000978 hasRevocation ONC000761 -ONC000979 hasCode MDMPNSF3B1 -ONC000979 hasRevocation ONC000763 -ONC000980 hasCode AMLDGA -ONC000980 hasRevocation ONC000783 -ONC000981 hasCode AMLRBM15MRTFA -ONC000981 hasRevocation ONC000790 -ONC000982 hasCode AMLKMT2A -ONC000982 hasRevocation ONC000787 -ONC000983 hasCode AMLMECOM -ONC000983 hasRevocation ONC000789 -ONC000984 hasCode AMLNUP98 -ONC000985 hasRevocation AMLMR -ONC000985 hasCode ONC000795 -ONC000986 hasCode AMLOGA -ONC000987 hasCode AMLCBFA2T3GLIS2 -ONC000988 hasCode AMLKAT6ACREBBP -ONC000989 hasCode AMLFUSERG -ONC000990 hasCode AMLMNX1ETV6 -ONC000991 hasCode AMLNPM1MLF1 -ONC000992 hasCode AMLDD -ONC000992 hasRevocation ONC000796 -ONC000993 hasCode AMCL -ONC000993 hasRevocation ONC000042 -ONC000994 hasCode AEL -ONC000994 hasRevocation ONC000801 -ONC000995 hasCode SMNS -ONC000996 hasCode MNPAPC -ONC000997 hasCode MNPCT -ONC000997 hasRevocation ONC000809 -ONC000998 hasCode MDNPCT -ONC000998 hasRevocation ONC000840 -ONC000999 hasCode MDMPNPCT -ONC001000 hasCode AMLPCT -ONC001000 hasRevocation ONC000841 -ONC001001 hasCode MLN -ONC001002 hasCode MLNETKGF -ONC001002 hasRevocation ONC000816 -ONC001003 hasCode MLNJAK2 -ONC001003 hasRevocation ONC000820 -ONC001004 hasCode MLNFLT3 -ONC001005 hasCode MLNETV6ABL1 -ONC001006 hasCode MLNOTKFG -ONC001007 hasCode ALALDGA -ONC001008 hasCode ALALODGA -ONC001009 hasCode MPALZNF384 -ONC001010 hasCode ALALBCL11B -ONC001011 hasCode ALALDI -ONC001012 hasCode MPALBM -ONC001012 hasRevocation ONC000814 -ONC001013 hasCode MPALTM -ONC001013 hasRevocation ONC000815 -ONC001014 hasCode MPALR -ONC001015 hasCode MPALBT -ONC001016 hasCode MPALBTM -ONC001017 hasCode MPALTMK -ONC001018 hasCode ALALNOS -ONC001019 hasCode ALMAL -ONC001019 hasCode ONC000810 -ONC001020 hasRevocation MNAGP -ONC001020 hasRevocation ONC000782 +ONC000952 hasCode MPCM +ONC000953 hasCode DCM +ONC000954 hasCode MC +ONC000955 hasCode BMM +ONC000956 hasCode MDN +ONC000956 hasRevocation ONC000050 +ONC000957 hasCode MDNGA +ONC000958 hasCode MDNLB5QD +ONC000958 hasRevocation ONC000771 +ONC000959 hasCode MDNLBSF3B1 +ONC000960 hasCode MDNBTP3 +ONC000961 hasCode MDNDM +ONC000962 hasCode MDNLB +ONC000963 hasCode MDNLBSLD +ONC000963 hasRevocation ONC000765 +ONC000964 hasCode MDNLBMD +ONC000964 hasRevocation ONC000769 +ONC000965 hasCode MDNH +ONC000966 hasCode MDNIB +ONC000966 hasRevocation ONC000770 +ONC000967 hasCode MDNIB1 +ONC000967 hasRevocation ONC000837 +ONC000968 hasCode MDNIB2 +ONC000968 hasRevocation ONC000838 +ONC000969 hasCode MDNBF +ONC000970 hasCode MDNC +ONC000971 hasCode CMDNLBH +ONC000972 hasCode CMDNB +ONC000973 hasCode MDCMML +ONC000974 hasCode MPCMML +ONC000975 hasCode AMLKMT2A +ONC000975 hasRevocation ONC000787 +ONC000976 hasCode AMLMECOM +ONC000976 hasRevocation ONC000789 +ONC000977 hasCode AMLNUP98 +ONC000978 hasCode AMLOGA +ONC000979 hasCode AMLCBFA2T3GLIS2 +ONC000980 hasCode AMLKAT6ACREBBP +ONC000981 hasCode AMLFUSERG +ONC000982 hasCode AMLMNX1ETV6 +ONC000983 hasCode AMLNPM1MLF1 +ONC000984 hasCode SMNS +ONC000985 hasCode MNPAPC +ONC000986 hasCode MNPCT +ONC000986 hasRevocation ONC000809 +ONC000987 hasCode MDNPCT +ONC000987 hasRevocation ONC000840 +ONC000988 hasCode MDMPNPCT +ONC000989 hasCode AMLPCT +ONC001089 hasRevocation ONC000841 +ONC001090 hasCode MLN +ONC001091 hasCode MLNJAK2 +ONC001091 hasRevocation ONC000820 +ONC001092 hasCode MLNFLT3 +ONC001093 hasCode MLNETV6ABL1 +ONC001094 hasCode MLNOTKFG +ONC001095 hasCode ALALDGA +ONC001096 hasCode ALALODGA +ONC001097 hasCode MPALZNF384 +ONC001098 hasCode ALALBCL11B +ONC001099 hasCode ALALDI +ONC001000 hasCode MPALR +ONC001001 hasCode MPALBT +ONC001002 hasCode MPALBTM +ONC001003 hasCode MPALTMK +ONC001004 hasCode ALALNOS From 2f7e47ad1f20c300db2ee837cb726be3bf889f6e Mon Sep 17 00:00:00 2001 From: Rima-Waleed <113367837+Rima-Waleed@users.noreply.github.com> Date: Fri, 16 May 2025 13:56:31 -0400 Subject: [PATCH 6/6] Update resource_uri_to_oncocode_mapping.txt Updated existing CML entry (rev CMLBCRABL1) and renamed MLNJAK2 --- resources/resource_uri_to_oncocode_mapping.txt | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/resources/resource_uri_to_oncocode_mapping.txt b/resources/resource_uri_to_oncocode_mapping.txt index 9abad8d0..7d30e857 100644 --- a/resources/resource_uri_to_oncocode_mapping.txt +++ b/resources/resource_uri_to_oncocode_mapping.txt @@ -47,6 +47,7 @@ ONC000042 hadCode AMMOL ONC000043 hasCode AML ONC000044 hasCode CLL ONC000045 hasCode CML +ONC000045 hasRevocation ONC000753 ONC000046 hasCode CMML ONC000047 hasCode HCL ONC000048 hasCode TLGL @@ -978,8 +979,6 @@ ONC000946 hasCode CH ONC000947 hasCode CHIP ONC000948 hasCode VS ONC000949 hasCode CCUS -ONC000950 hasCode CML -ONC000950 hasRevocation ONC000753 ONC000951 hasCode CEL ONC000951 hasRevocation ONC000758 ONC000952 hasCode MPCM @@ -1033,7 +1032,7 @@ ONC000988 hasCode MDMPNPCT ONC000989 hasCode AMLPCT ONC001089 hasRevocation ONC000841 ONC001090 hasCode MLN -ONC001091 hasCode MLNJAK2 +ONC001091 hasCode MLNJAK2R ONC001091 hasRevocation ONC000820 ONC001092 hasCode MLNFLT3 ONC001093 hasCode MLNETV6ABL1