Return full ARACNe ranking

[jonathan-f]

Hello,
thanks for the amazing package.

I have a question about ARACNe: I use the commands in the folder /data/ to generate ARACNe networks and they work nicely on a HPC.

Now I would need to save the full ARACNe ranking instead that only the significant interactions. To this end, in the file aracne-script.sh, I set P_THRESH=1.0 and passed "bonferroni 1.0" to aracne_consolidate.R, but I still get only the significant interactions.

How can I obtain the full ARACNe rankings?

Thank you,
Best wishes
Jonathan