SPECTRE/pyproject.toml at main · cclaess/SPECTRE · GitHub

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[build-system]
requires = ["setuptools>=61.0", "wheel", "setuptools_scm"]
build-backend = "setuptools.build_meta"

[project]
name = "spectre-fm"
description = "SPECTRE: cross-modal self-supervised pretraining for CT representation extraction"
readme = { file = "README.md", content-type = "text/markdown" }
requires-python = ">=3.10"
dynamic = ["version"]

authors = [
	{ name = "Cris Claessens", email = "c.h.b.claessens@tue.nl" },
    { name = "Christiaan Viviers", email = "c.g.a.viviers@tue.nl" }
]

license-files = ["LICENSE", "LICENSE_MODELS"]

classifiers = [
	"Programming Language :: Python :: 3.10",
	"Programming Language :: Python :: 3.11",
	"Programming Language :: Python :: 3.12",
	"Operating System :: OS Independent",
	"Topic :: Scientific/Engineering :: Artificial Intelligence",
]

keywords = ["medical", "ct", "self-supervised", "vision", "deep-learning"]

dependencies = [
	"torch",
	"numpy",
	"timm",
	"transformers",
	"huggingface_hub",
	"loralib",
]

[project.optional-dependencies]
# Everything needed to read CT scans off disk and run the `spectre` CLI. The model itself, and
# windowing an in-memory tensor, need nothing beyond the base dependencies.
inference = [
	"nibabel",
	"monai",
]

training = [
	"wandb",
	"monai",
	"nibabel",
	"SimpleITK",
	"scipy",
	"pandas",
	"openpyxl",
	"tqdm",
	"accelerate",
	"omegaconf",
]

eval = [
	"monai",
	"nibabel",
	"SimpleITK",
	"pillow",
	"scipy",
	"scikit-learn",
	"pandas",
	"openpyxl",
	"tqdm",
	"matplotlib",
	"seaborn",
	"umap-learn",
]

gds-cuda12 = [
	"cupy-cuda12x",
	"kvikio",
]

all = ["spectre-fm[training,eval,inference,gds-cuda12]"]

[project.scripts]
spectre = "spectre.cli:main"

[project.urls]
Homepage = "https://github.com/cclaess/SPECTRE"
Source = "https://github.com/cclaess/SPECTRE"
BugTracker = "https://github.com/cclaess/SPECTRE/issues"

[tool.setuptools]
include-package-data = true

[tool.setuptools.package-dir]
"" = "src"

[tool.setuptools.packages.find]
where = ["src"]

[tool.setuptools_scm]
version_scheme = "post-release"
local_scheme = "dirty-tag"
fallback_version = "0.1.0"