I am trying to run deepdegron test on a set of samples with hg38 variants. The command I am running is
deepdegron test --ensembl-release 95 -t <input_maf> -ns 10000 -c models/cterm/neural_network_pos_specific.pickle,models/cterm/neural_network_bag_of_amino_acids.pickle, -o <output_file>
However, when running it appears to be using Ensembl Release 75 instead.
INFO:pyensembl.sequence_data:Loaded sequence dictionary from pyensembl/GRCh37/ensembl75/Homo_sapiens.GRCh37.75.cdna.all.fa.gz.pickle
INFO:pyensembl.sequence_data:Loaded sequence dictionary from pyensembl/GRCh37/ensembl75/Homo_sapiens.GRCh37.75.ncrna.fa.gz.pickle
I have been able to run deepdegron score --ensembl-release 95 without the same issue appearing.
Thank you!
I am trying to run deepdegron test on a set of samples with hg38 variants. The command I am running is
deepdegron test --ensembl-release 95 -t <input_maf> -ns 10000 -c models/cterm/neural_network_pos_specific.pickle,models/cterm/neural_network_bag_of_amino_acids.pickle, -o <output_file>
However, when running it appears to be using Ensembl Release 75 instead.
INFO:pyensembl.sequence_data:Loaded sequence dictionary from pyensembl/GRCh37/ensembl75/Homo_sapiens.GRCh37.75.cdna.all.fa.gz.pickle
INFO:pyensembl.sequence_data:Loaded sequence dictionary from pyensembl/GRCh37/ensembl75/Homo_sapiens.GRCh37.75.ncrna.fa.gz.pickle
I have been able to run deepdegron score --ensembl-release 95 without the same issue appearing.
Thank you!