diff --git a/.Rbuildignore b/.Rbuildignore index 8473947d2..30a0f18d8 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -13,3 +13,5 @@ _freeze/ ^\.github$ ^README\.Rmd$ ^data-raw$ +^\.positai$ +^\.claude$ diff --git a/.github/copilot-instructions.md b/.github/copilot-instructions.md index 8b063ae0a..603b4bc87 100644 --- a/.github/copilot-instructions.md +++ b/.github/copilot-instructions.md @@ -188,6 +188,7 @@ Key macros to use: - **Aligned equations**: Use `\ba` / `\ea` for `\begin{aligned}` / `\end{aligned}` - **Greek letters**: Use `\b` for $\beta$, `\g` for $\gamma$, `\a` for $\alpha$ - **Formatting**: Use `\red{...}` and `\blue{...}` for colored text in math +- **Deviation/error notation**: Use `\erf{...}` for deviations of estimates/estimators from their estimands; use `\devn(...)` for all other deviations (e.g., observations from population means) matrix-product helper macros: @@ -198,7 +199,7 @@ matrix-product helper macros: Residual and deviation helper macros include: -- `\err` for generic error or residual terms +- `\err` is deprecated; prefer `\devn(...)` for new non-estimation deviations while legacy uses are being phased out - `\erf{\theta}` for estimate/estimand deviations - `\devn(...)` for other deviations - `\resid` for residual symbols (`r`) @@ -213,6 +214,11 @@ Residual and deviation helper macros include: Always check `latex-macros/macros.qmd` for available macros before writing raw LaTeX. +When a repeatedly used expression needs a new macro, +add it to `latex-macros/macros.qmd` +in the `latex-macros` submodule +and push that submodule update. + ## Color Coding Strategy for Math Expressions Use `\red{...}` and `\blue{...}` purposefully and consistently to help readers: diff --git a/.github/workflows/lint-changed-files.yaml b/.github/workflows/lint-changed-files.yaml index d07d6d5cb..e272f6e31 100644 --- a/.github/workflows/lint-changed-files.yaml +++ b/.github/workflows/lint-changed-files.yaml @@ -16,13 +16,18 @@ jobs: - uses: actions/checkout@v5 - uses: r-lib/actions/setup-r@v2 + with: + r-version: '4.6.0' + use-public-rspm: true - name: Install system dependencies run: | sudo apt-get update - sudo apt-get install -y jags libcurl4-openssl-dev libpng-dev libfontconfig1-dev libjpeg-dev libglpk-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libtiff5-dev libwebp-dev + sudo apt-get install -y jags libcurl4-openssl-dev libpng-dev libfontconfig1-dev libjpeg-dev libglpk-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libtiff5-dev libwebp-dev libnode109 - uses: r-lib/actions/setup-renv@v2 + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} - name: Add lintr options run: | @@ -33,6 +38,7 @@ jobs: run: | files <- gh::gh("GET https://api.github.com/repos/${{ github.repository }}/pulls/${{ github.event.pull_request.number }}/files") changed_files <- purrr::map_chr(files, "filename") + changed_files <- setdiff(changed_files, "renv/activate.R") all_files <- list.files(recursive = TRUE) exclusions_list <- as.list(setdiff(all_files, changed_files)) lintr::lint_dir(exclusions = exclusions_list) diff --git a/.github/workflows/preview.yml b/.github/workflows/preview.yml index 1212ea33a..d26f85e58 100644 --- a/.github/workflows/preview.yml +++ b/.github/workflows/preview.yml @@ -43,8 +43,9 @@ jobs: with: tinytex: false - - uses: r-lib/actions/setup-r@HEAD + - uses: r-lib/actions/setup-r@v2 with: + r-version: '4.6.0' use-public-rspm: true - name: Install system dependencies @@ -52,9 +53,11 @@ jobs: sudo apt-get update # `libglpk-dev` is required for the igraph/ggdag/ggraph dependency stack. # Keep this dependency aligned with other workflows that restore/render the same renv set. - sudo apt-get install -y jags libcurl4-openssl-dev libpng-dev libfontconfig1-dev libjpeg-dev libglpk-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libtiff5-dev libwebp-dev + sudo apt-get install -y jags libcurl4-openssl-dev libpng-dev libfontconfig1-dev libjpeg-dev libglpk-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libtiff5-dev libwebp-dev libnode109 - uses: r-lib/actions/setup-renv@v2 + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} - name: Install local package run: | diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index 98fdd1f6a..08817f745 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -28,16 +28,19 @@ jobs: with: tinytex: true - - uses: r-lib/actions/setup-r@HEAD + - uses: r-lib/actions/setup-r@v2 with: + r-version: '4.6.0' use-public-rspm: true - name: Install system dependencies run: | sudo apt-get update - sudo apt-get install -y jags libcurl4-openssl-dev libpng-dev libfontconfig1-dev libjpeg-dev libglpk-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libtiff5-dev libwebp-dev + sudo apt-get install -y jags libcurl4-openssl-dev libpng-dev libfontconfig1-dev libjpeg-dev libglpk-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libtiff5-dev libwebp-dev libnode109 - uses: r-lib/actions/setup-renv@v2 + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} - name: Install local package run: | diff --git a/.gitignore b/.gitignore index e9eaff9fc..c38274a35 100644 --- a/.gitignore +++ b/.gitignore @@ -43,3 +43,5 @@ renv/lock/ renv/python/ renv/sandbox/ renv/staging/ +.positai +.claude diff --git a/DESCRIPTION b/DESCRIPTION index 377c68d8c..a623f0805 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -53,6 +53,7 @@ Suggests: plotly, rjags, runjags, + datawizard (>= 1.3.1), survminer, tidyr, spelling, diff --git a/_subfiles/Linear-models-overview/_def-residual-deviation.qmd b/_subfiles/Linear-models-overview/_def-residual-deviation.qmd index e11cd46ed..e89cc8921 100644 --- a/_subfiles/Linear-models-overview/_def-residual-deviation.qmd +++ b/_subfiles/Linear-models-overview/_def-residual-deviation.qmd @@ -1,26 +1,59 @@ -:::{#def-resid-noise} -#### Residual noise/deviation from the population mean +:::{#def-deviation-subpop-mean} +#### Deviation of an observation from its subpopulation mean -The **residual noise** in a probabilistic model $p(Y)$, -also known as the -**residual deviation of an observation from its population mean** -or **residual** for short, -is the difference between an observed value $y$ and its population mean: +The **deviation of an observation from its subpopulation mean** +in a probabilistic model $p(Y \mid X)$, +is the difference between an observed value +and its model-implied mean given covariates: -$$\devn(y) \eqdef y - \Expf{Y}$$ {#eq-def-resid} +$$\devn(y_i) \eqdef y_i - \E{Y_i \mid X_i}$$ {#eq-def-deviation-subpop-mean} ::: :::{.notes} -We use the same notation for residual noise that we used for [errors](estimation.qmd#def-error). +Many sources call deviations "error" or "noise." +The model-implied mean +can be viewed as an estimate of $Y_i$, +before $y_i$ is observed. +However, an estimation error is defined as an estimate minus its estimand +(see [estimation error](estimation.qmd#def-estimation-error)), +and deviation is the observed value minus its estimand, +so the deviation is actually the *negative* of the estimation error of the mean $\E{Y_i \mid X_i}$ +with respect to its estimand $Y_i$: -$\Expf{Y}$ can be viewed as an estimate of $Y$, before $y$ is observed. -Conversely, each observation $y$ can be viewed as an estimate of $\Expf{Y}$ -(albeit an imprecise one, individually, since $n=1$). +$$\devn(y_i) = -\paren{\E{Y_i \mid X_i} - y_i}$$ + +On the other hand, +each observation $y_i$ can be viewed +as a nonparametric estimate of $\mu_i = \E{Y_i \mid X_i}$ +(albeit an imprecise one, individually, since $n=1$): + +$$y_i = \hmu_i^{(NP)}$$ + +where $\hmu_i^{(NP)}$ denotes +the nonparametric estimate from a single observed value $y_i$. + +Thus, +the deviation can be interpreted as the estimation error of $y_i$ +with respect to $\E{Y_i \mid X_i}$: + +$$ +\ba +\devn(y_i) +&= y_i - \mu_i +\\ +&= \hmu_i^{(NP)} - \mu_i +\\ +&= \erf{\hmu_i^{(NP)}} +\ea +$$ ::: -We can rearrange @eq-def-resid -to view $y$ as -the sum of its mean plus the residual noise: +--- + +We can rearrange @eq-def-deviation-subpop-mean +to view $y_i$ as +the sum of its mean plus the deviation +(often called error/noise): -$$y = \Exp{Y} + \epsf{y}$$ +$$y_i = \E{Y_i \mid X_i} + \devn(y_i)$$ diff --git a/_subfiles/Linear-models-overview/_def-signal.qmd b/_subfiles/Linear-models-overview/_def-signal.qmd new file mode 100644 index 000000000..b44f231b2 --- /dev/null +++ b/_subfiles/Linear-models-overview/_def-signal.qmd @@ -0,0 +1,9 @@ +:::{#def-signal} +#### Signal (statistical sense) + +In statistical modeling, +the **signal** is the deterministic part of the model. +For mean-based models, +the signal is the model-implied mean function, +for example $\E{Y \mid X}$ (or $\E{Y}$ when there are no covariates). +::: diff --git a/_subfiles/Linear-models-overview/_sec_linreg_diagnostics.qmd b/_subfiles/Linear-models-overview/_sec_linreg_diagnostics.qmd index 7d2510fa5..c62265201 100644 --- a/_subfiles/Linear-models-overview/_sec_linreg_diagnostics.qmd +++ b/_subfiles/Linear-models-overview/_sec_linreg_diagnostics.qmd @@ -176,7 +176,7 @@ With intercept ::: -### Residuals +### Residuals {#sec-lm-residuals} ::: notes Maybe we can transform the data and model in some way @@ -185,13 +185,15 @@ to make it easier to inspect. {{< include _subfiles/Linear-models-overview/_def-residual-deviation.qmd >}} +{{< include _subfiles/Linear-models-overview/_def-signal.qmd >}} + --- -:::{#thm-gaussian-resid-noise} -#### Residuals in Gaussian models +:::{#thm-gaussian-resid-deviation} +#### Deviations in Gaussian models If $Y$ has a Gaussian distribution, -then $\err(Y)$ also has a Gaussian distribution, and vice versa. +then $\devn(Y)$ also has a Gaussian distribution, and vice versa. ::: :::{.proof} @@ -201,15 +203,9 @@ Left to the reader. --- :::{#def-resid-fitted} -#### Residuals of a fitted model value +#### Residuals -The **residual of a fitted value $\hat y$** (shorthand: "residual") is its [error](estimation.qmd#def-error) relative to the observed data: -$$ -\ba -e(\hat y) &\eqdef \erf{\hat y} -\\&= y - \hat y -\ea -$$ +{{< include _subfiles/shared/_def-residual-observed-minus-fitted.qmd >}} ::: --- @@ -244,27 +240,87 @@ Fitted values and residuals for interaction model for `birthweight` data --- -#### Residuals of fitted values vs residual noise +#### Residuals of fitted values vs subpopulation-mean deviations -$e(\hat y)$ can be seen as the maximum likelihood estimate of the residual noise: +The residual is a plug-in estimate +of the deviation of an observation +from its subpopulation mean: $$ \ba -e(\hy) &= y - \hat y -\\ &= \hat\eps_{ML} +\devn(y_i) &= y_i - \E{Y_i \mid X_i} +\\ +\widehat{\devn(y_i)} &= y_i - \hat y_i +\\ +&= \resid_i \ea $$ +Different sources are not fully consistent +about these terms. +For terminology in this course, +we use: + +- **deviation** + for deviation of an observation from its population mean (typically conditional on covariates). + This quantity is often called **error** in other sources, + even though it doesn't directly involve an estimate; + cf., ; +- **estimation error** for deviation of an estimate from its estimand; +- **residual** for deviation of an observed value from a fitted value. + --- #### General characteristics of residuals +:::{#def-hat-matrix} +##### Hat matrix + +For an ordinary least squares linear model +with design matrix $\mX$, +the **hat matrix** is + +$$H = \mX(\tp{\mX}\mX)^{-1}\tp{\mX}$$ + +so the fitted values satisfy + +$$\hat{\vY} = H\vY$$ +::: + :::{#thm-resid-unbiased} -If $\hExpf{Y}$ is an [unbiased](estimation.qmd#sec-unbiased-estimators) -estimator of the mean $\Expf{Y}$, then: +For an ordinary least squares linear model +with fitted values $\hat y_i = \dprodf{\vx_i}{\vb}$ +(and fitted-value vector $\hat{\vY}$), +if the conditional mean is correctly specified so that: + +$$ \E{\vY \mid \mX} = \mX\b$$ + +equivalently: + +$$ \E{\hat{\vY} \mid \mX} = \E{\vY \mid \mX}$$ + +and if the errors are homoskedastic so that +$\Var{\vY \mid \mX} = \ss \idmat_n$ where $\idmat_n$ is the $n \times n$ identity matrix, +then, +treating $\mX$ as fixed in this derivation, +the residual moments are: + +$$\E{\vec{\resid} \mid \mX} = 0$$ {#eq-mean-resid-unbiased} +$$\Var{\resid_i \mid \mX} = \ss(1-h_{ii})$$ {#eq-var-resid-leverage} -$$\E{e(y)} = 0$$ {#eq-mean-resid-unbiased} -$$\Var{e(y)} \approx \ss$$ {#eq-var-resid-unbiased} +The conditional mean result (@eq-mean-resid-unbiased) +uses unbiasedness of fitted values. +The conditional variance result (@eq-var-resid-leverage) +uses the homoskedasticity condition +with the OLS hat-matrix representation. + +When leverage is roughly uniform, +$h_{ii} \approx k/n$, +where $k = \mathrm{rank}(\mX)$ +(so $k = p + 1$ for a full-rank model +with an intercept and $p$ predictors), +so $\Var{\resid_i} \approx \ss$ +as $n$ grows. ::: @@ -277,22 +333,32 @@ $$\Var{e(y)} \approx \ss$$ {#eq-var-resid-unbiased} $$ \ba -\Ef{e(y)} &= \Ef{y - \hat y} -\\ &= \Ef{y} - \Ef{\hat y} -\\ &= \Ef{y} - \Ef{y} -\\ &= 0 +\E{{\vec{\resid}} \mid \mX} &= \E{\vY - \hat{\vY} \mid \mX} +\\ &= \E{\vY \mid \mX} - \E{\hat{\vY} \mid \mX} +\\ &= \E{\vY \mid \mX} - \E{H\vY \mid \mX} +\\ &= \E{\vY \mid \mX} - H\E{\vY \mid \mX} +\\ &= \E{\vY \mid \mX} - H\mX\b +\\ &= \mX\b - H\mX\b +\\ &= \mX\b - \mX\b +\\ &= \vec{0} \ea $$ -@eq-var-resid-unbiased: +@eq-var-resid-leverage: $$ \ba -\Var{e(y)} &= \Var{y - \hy} -\\ &= \Var{y} + \Var{\hy} - 2 \Cov{y, \hy} -\\ &{\dot{\approx}} \Var{y} + 0 - 2 \cdot 0 -\\ &= \Var{y} -\\ &= \ss +{\vec{\resid}} &= (\idmat_n-H)\vY +\\ \Var{{\vec{\resid}} \mid \mX} &= \Var{(\idmat_n-H)\vY \mid \mX} +\\ &= (\idmat_n-H)\Var{\vY \mid \mX}\tp{(\idmat_n-H)} +\\ &= (\idmat_n-H)\ss \idmat_n\tp{(\idmat_n-H)} +\\ &= \ss(\idmat_n-H)\tp{(\idmat_n-H)} +\\ &= \ss(\idmat_n-H)^2 +\\ &= \ss(\idmat_n - 2H + H^2) +\\ &= \ss(\idmat_n-H) \qquad (\text{since } H^2 = H) +\\ \Var{\resid_i \mid \mX} &= \left[\Var{{\vec{\resid}} \mid \mX}\right]_{ii} +\\ &= \left[\ss(\idmat_n-H)\right]_{ii} +\\ &= \ss(1-h_{ii}) \ea $$ ::: @@ -301,16 +367,18 @@ $$ #### Characteristics of residuals in Gaussian models -With enough data and a correct model, -the residuals will be approximately Gaussian distributed, -with variance $\sigma^2$, -which we can estimate using $\hat\sigma^2$; -that is: +In a correct Gaussian linear model, +the deviations from the model-implied means +are conditionally i.i.d. Gaussian: $$ -e_i \siid N(0, \hat\sigma^2) +\devn(Y_i) \mid \mX \siid N(0, \sigma^2) $$ +Residuals $\resid_i$ are observed approximations +to these deviations. +Their spread is often summarized using $\hat\sigma^2$. + --- #### Computing residuals in R @@ -554,31 +622,79 @@ Residuals of interaction model for `hers` data, with and without intercept term #### Standardized residuals -$$r_i = \frac{e_i}{\widehat{SD}(e_i)}$$ +For an ordinary linear model, +the estimated standard deviation of the $i$th residual is + +$$ +\hSD{\resid_i} = \hat{\sigma}\sqrt{1-h_{ii}} +$$ +so the standardized residual is + +$$ +\stdresid_i = \frac{\resid_i}{\hSD{\resid_i}} += \frac{\resid_i}{\hat{\sigma}\sqrt{1-h_{ii}}} +$$ ::: -Hence, with enough data and a correct model, the standardized residuals will be approximately standard Gaussian; that is, +Hence, with enough data and a correct model, +each standardized residual has an approximately standard Gaussian **marginal** distribution; that is, $$ -r_i \siid N(0,1) +\stdresid_i \ddist N(0,1) $$ +but they are not independent. +If $H$ is the hat matrix with entries $h_{ij}$, +then + +$$ +\Cov{\resid_i,\resid_j \mid \mX} += +\begin{cases} +\ss(1-h_{ii}), & i=j,\\ +-\ss h_{ij}, & i\neq j, +\end{cases} +$$ + +and therefore + +$$ +\Cov{\stdresid_i,\stdresid_j \mid \mX} +\approx +\begin{cases} +1, & i=j,\\ +\dfrac{-h_{ij}}{\sqrt{(1-h_{ii})(1-h_{jj})}}, & i\neq j, +\end{cases} +$$ + +In particular, +for $i \neq j$, +these covariances are generally nonzero. + ### Marginal distributions of residuals -To look for problems with our model, we can check whether the residuals $e_i$ and standardized residuals $r_i$ look like they have the distributions that they are supposed to have, according to the model. +To look for problems with our model, +we can check whether the residuals $\resid_i$ +and standardized residuals $\stdresid_i$ +look like they have the distributions +that they are supposed to have, +according to the model. --- #### Standardized residuals in R ```{r} +h_ii <- hatvalues(bw_lm2) +manual_std_resid <- resid(bw_lm2) / (sigma(bw_lm2) * sqrt(1 - h_ii)) +manual_std_resid rstandard(bw_lm2) -resid(bw_lm2) / sigma(bw_lm2) ``` ::: notes -These are not quite the same, because R is doing something more complicated and precise to get the standard errors. Let's not worry about those details for now; the difference is pretty small in this case: +These are nearly the same. +Any differences are from numerical rounding. ::: @@ -587,14 +703,14 @@ These are not quite the same, because R is doing something more complicated and ```{r} rstandard_compare_plot <- tibble( - x = resid(bw_lm2) / sigma(bw_lm2), + x = resid(bw_lm2) / (sigma(bw_lm2) * sqrt(1 - h_ii)), y = rstandard(bw_lm2) ) |> ggplot(aes(x = x, y = y)) + geom_point() + theme_bw() + coord_equal() + - xlab("resid(bw_lm2)/sigma(bw_lm2)") + + xlab("resid(bw_lm2)/(sigma(bw_lm2)*sqrt(1-h_ii))") + ylab("rstandard(bw_lm2)") + geom_abline( aes( @@ -621,7 +737,8 @@ bw <- resid_lm2 = resid(bw_lm2), resid_lm2_alt = weight - fitted_lm2, std_resid_lm2 = rstandard(bw_lm2), - std_resid_lm2_alt = resid_lm2 / sigma(bw_lm2) + std_resid_lm2_alt = + resid_lm2 / (sigma(bw_lm2) * sqrt(1 - h_ii)) ) bw |> @@ -700,16 +817,11 @@ Each point corresponds to one observation: plotted in increasing order as $r_{(1)}\le\cdots\le r_{(n)}$. In QQ-plot terminology, these ordered values are [sample quantiles](nonparametric-models.qmd#def-sample-quantile). - Let $r_{(1)} \le \cdots \le r_{(n)}$ - be the [order statistics](nonparametric-models.qmd#def-order-statistics) - of the standardized residuals. - Let $\hat F_r$ be their [empirical CDF](nonparametric-models.qmd#def-empirical-cdf) - and $\hat Q_r$ the corresponding sample quantile function. The QQ plot uses points $$\left(\Phi^{-1}(p_i),\, r_{(i)}\right), \quad i = 1, \ldots, n,$$ where $p_i$ denotes the plotting positions returned by `ppoints(n)`. For the common midpoint choice $p_i=(i-0.5)/n$, - we have $\hat Q_r(p_i)=r_{(i)}$. + the sample quantile at $p_i$ equals $r_{(i)}$. More generally, `qqnorm()` pairs the $i$th ordered residual with the corresponding theoretical quantile @@ -834,8 +946,8 @@ To construct a QQ plot by hand: $$p_i = \frac{\text{rank}_i - 0.5}{n}$$ 2. Compute the **theoretical quantile**: $q_i = \Phi^{-1}(p_i)$, the value from $N(0,1)$ that corresponds to probability $p_i$. -3. Plot $(q_i, r_i)$ — theoretical quantile $q_i$ on the x-axis, - observed standardized residual $r_i$ (see @def-stred) on the y-axis. +3. Plot $(q_i, \stdresid_i)$ — theoretical quantile $q_i$ on the x-axis, + observed standardized residual $\stdresid_i$ (see @def-stred) on the y-axis. 4. Add the **reference line** through the pairs of theoretical and empirical quantiles at probabilities 0.25 and 0.75. ::: @@ -936,7 +1048,7 @@ All three plots show the same data and reference line. ### Conditional distributions of residuals -If our Gaussian linear regression model is correct, the residuals $e_i$ and standardized residuals $r_i$ should have: +If our Gaussian linear regression model is correct, the residuals $\resid_i$ and standardized residuals $\stdresid_i$ should have: - an approximately Gaussian distribution, with: - a mean of 0 @@ -946,19 +1058,20 @@ This should be true **for every** value of $x$. --- -If we didn't correctly guess the functional form of the linear component of the mean, -$$\text{E}[Y|X=x] = \beta_0 + \beta_1 X_1 + ... + \beta_p X_p$$ +If we didn't correctly guess the functional form of the linear component of the mean, +for covariate vector $x = (x_1,\ldots,x_p)$, +$$\E{Y \mid X=x} = \b_0 + \b_1 x_1 + ... + \b_p x_p$$ Then the residuals might have nonzero mean. -Regardless of whether we guessed the mean function correctly, ther the variance of the residuals might differ between values of $x$. +Regardless of whether we guessed the mean function correctly, the variance of the residuals might differ between values of $x$. --- #### Residuals versus fitted values ::: notes -To look for these issues, we can plot the residuals $e_i$ against the fitted values $\hat y_i$ (@fig-bw_lm2-resid-vs-fitted). +To look for these issues, we can plot the residuals $\resid_i$ against the fitted values $\hat y_i$ (@fig-bw_lm2-resid-vs-fitted). ::: :::{#fig-bw_lm2-resid-vs-fitted} @@ -973,7 +1086,10 @@ autoplot(bw_lm2, which = 1, ncol = 1) |> print() ::: notes If the model is correct, the blue line should stay flat and close to 0, and the cloud of dots should have the same vertical spread regardless of the fitted value. -If not, we probably need to change the functional form of linear component of the mean, $$\text{E}[Y|X=x] = \beta_0 + \beta_1 X_1 + ... + \beta_p X_p$$ +If not, +we probably need to change the functional form +of the linear component of the mean, +$$\E{Y \mid X=x} = \b_0 + \b_1 x_1 + ... + \b_p x_p$$ ::: diff --git a/_subfiles/shared/_def-residual-observed-minus-fitted.qmd b/_subfiles/shared/_def-residual-observed-minus-fitted.qmd new file mode 100644 index 000000000..53aea262d --- /dev/null +++ b/_subfiles/shared/_def-residual-observed-minus-fitted.qmd @@ -0,0 +1,21 @@ +A **residual** is the difference +between an observed value +and its corresponding fitted value, $\hat y$: +$$ +\ba +\resid &\eqdef y - \hat y +\ea +$$ + +For indexed observations, +this is equivalently: +$$ +\resid_i \eqdef y_i - \hat y_i +$$ + +For a particular fitted model, +each residual $\resid_i$ +is tied to its corresponding fitted value $\hat y_i$. +The fitted value $\hat y_i$ is often +a sample mean or fitted conditional mean, +but not always. diff --git a/estimation.qmd b/estimation.qmd index e36adf794..66a5a7f30 100644 --- a/estimation.qmd +++ b/estimation.qmd @@ -184,21 +184,31 @@ secondary. The **accuracy** of an estimator for a given estimand does not have a consensus formal definition, but all of the usual candidates are related -to the distributions of the *errors* made by the resulting estimates. +to the distributions of the *estimation errors* made by the resulting estimates. ::: -## Error +## Estimation error -::: {#def-error} -#### Error +::: {#def-estimation-error} +#### Estimation error -The **error** of an estimate $\hth$ of a true value $\th$, often denoted $\eps(\hth)$, or more completely $\eps(\hth, \th)$, is the -difference between the estimate and its estimand $\theta$; that is: +The **estimation error** of an estimate $\hth$ of a true value $\th$ +is the difference between +the estimate and the estimand $\th$: -$$\eps(\hth) \eqdef \hth - \th$$ +$$\erf{\hth} \eqdef \hth - \th$$ ::: +## Residuals + +See [Linear-model residual definitions and terminology](Linear-models-overview.qmd#sec-lm-residuals) +for residual definitions +and for the relationship between +residuals, +model deviations, +and estimation error. + Some frequently-used measures of accuracy include: ## Mean squared error @@ -207,9 +217,10 @@ Some frequently-used measures of accuracy include: #### Mean squared error The **mean squared error** of an estimator $\hth$, denoted -$\mselr{\hth}$, is the expectation of the square of the error[^1]: +$\mselr{\hth}$, is the expectation of the square +of the estimation error[^1]: -$$\mselr{\hth} \eqdef \E{(\err(\hth))^2}$$ +$$\mselr{\hth} \eqdef \E{\sqf{\erf{\hth}}}$$ ::: ## Mean absolute error @@ -218,10 +229,10 @@ $$\mselr{\hth} \eqdef \E{(\err(\hth))^2}$$ #### Mean absolute error The **mean absolute error** of an estimator is the expectation of the -absolute value of the error: +absolute value of the estimation error: $$ -\maelr{\hth} \eqdef \E{\abs{\err(\hth)}} +\maelr{\hth} \eqdef \E{\abs{\erf{\hth}}} $$ ::: @@ -231,9 +242,9 @@ $$ #### Bias The **bias** of an estimator $\hth$ for an estimand $\theta$ is the -expected value of the error: +expected value of the estimation error: -$$\bias{\hth} \eqdef \E{\err(\hth)}$$ {#eq-bias-def} +$$\bias{\hth} \eqdef \E{\erf{\hth}}$$ {#eq-bias-def} ::: --- @@ -250,7 +261,7 @@ $$\bias{\hth} =\E{\hth} - \theta$$ $$ \begin{aligned} \bias{\hth} -&\eqdef \E{\err(\hth)}\\ +&\eqdef \E{\erf{\hth}}\\ &= \E{\hth - \theta}\\ &=\E{\hth} - \E{\theta}\\ &=\E{\hth} - \theta @@ -318,7 +329,7 @@ $$ $$ \ba \mselr{\hth} -&\eqdef \E{\sqf{\eps(\hth)}}\\ +&\eqdef \E{\sqf{\erf{\hth}}}\\ &= \E{\sqf{\hth - \th}}\\ &= \E{\sqf{\hth - \E{\hth}}}\\ &\eqdef \Var{\hth} @@ -354,19 +365,31 @@ $$\SE{\hth} \eqdef \SD{\hth}$$ ::: -"Standard error" is a confusing concept in a few ways. First of all, it isn't even defined as a characteristic of the [error](#def-error), $\eps(\hth)$! Moreover, it is just a synonym for standard deviation, so it seems like a redundant concept. However, standard errors help us construct p-values and confidence intervals, so they come up a lot - often enough to give them their own name. +"Standard error" is a confusing concept in a few ways. +First of all, +it isn't even defined as a characteristic of the [estimation error](#def-estimation-error), +$\erf{\hth}$! +Moreover, +it is just a synonym for standard deviation, +so it seems like a redundant concept. +However, +standard errors help us construct p-values and confidence intervals, +so they come up a lot - often enough to give them their own name. -We can relate standard error to actual error, by rearranging the result from @thm-mse-bias-variance: +We can relate standard error to estimation error, +by rearranging the result from @thm-mse-bias-variance: $$ \ba \Var{\hth} &= \Var{\hth - \th}\\ -&= \Var{\eps(\hth)}\\ +&= \Var{\erf{\hth}}\\ \ea $$ -So the variance of the estimator is equal to the variance of the error, and the standard error is equal to the standard deviation of the error: +So the variance of the estimator is equal to the variance of the estimation error, +and the standard error is equal to the standard deviation +of the estimation error: -$$\SE{\hth} = \SD{\eps(\hth)}$$ +$$\SE{\hth} = \SD{\erf{\hth}}$$ --- diff --git a/probability.qmd b/probability.qmd index 210ba98d2..260fa56b3 100644 --- a/probability.qmd +++ b/probability.qmd @@ -718,6 +718,67 @@ $$ --- +## Deviation, error, and noise + +:::{#def-deviation} +### Deviation + +A **deviation** is the difference between a value and a reference value. +For any quantity $z$ and reference value $r$: + +$$z - r$$ + +In probability and statistics, +"deviation" often means deviation from a population mean. +For a random variable $Y$: + +$$Y - \E{Y}$$ + +::: + +--- + +:::{#def-deviation-pop-mean} +### Deviation from a population or subpopulation mean + +In probabilistic models, +we call this quantity a **deviation from a mean**. +It is often also called an **error** or **noise term** +in other sources. +For the random variable $Y$, +define the deviation from its mean as: + +$$\devn(Y) \eqdef Y - \E{Y}$$ + +For a realized observation $y$: +$$\devn(y) \eqdef y - \E{Y}$$ + +In regression settings, +the reference mean is often conditional on covariates: +$\devn(y_i) \eqdef y_i - \E{Y_i \mid X_i}$. + +In this course, +we prefer "deviation" +for this mean-deviation quantity. +The terms "error" and "noise" are common aliases. +We use "residual" +(defined in the [Linear regression chapter](Linear-models-overview.qmd#def-resid-fitted)) +for deviations from fitted values. +For notation in this course, +we use $\devn(\cdot)$ for these model/data deviations, +and reserve $\erf{\cdot}$ for estimator-to-estimand deviations +(see [Estimation](estimation.qmd#def-estimation-error)). + +See: + +- [Wikipedia: Errors and residuals](https://en.wikipedia.org/wiki/Errors_and_residuals) +- [Wikipedia: Deviation (statistics)](https://en.wikipedia.org/wiki/Deviation_(statistics)) +- [Wikipedia: Linear regression — Notation and terminology](https://en.wikipedia.org/wiki/Linear_regression#Notation_and_terminology) + +::: + +--- + ## Variance and related characteristics :::{#def-variance} diff --git a/proof-mse-bias-variance.qmd b/proof-mse-bias-variance.qmd index 1bf58256a..b18ecba1e 100644 --- a/proof-mse-bias-variance.qmd +++ b/proof-mse-bias-variance.qmd @@ -25,9 +25,9 @@ Now let's expand the left-hand side to reach the same expression: $$ \ba \mselr{\hth} -&= \E{(\e(\hth))^2}\\ +&= \E{\sqf{\erf{\hth}}}\\ &= \E{(\hth - \th)^2}\\ -&= \E{\hth^2 - 2\hth\th - \th^2}\\ +&= \E{\hth^2 - 2\hth\th + \th^2}\\ &=\E{\hth^2} - \E{2\hth\th}+\E{\th^2}\\ &=\E{\hth^2} - 2\E{\hth}\th+\th^2\\ \ea @@ -36,4 +36,3 @@ $$ $\mselr{\hth}$ and $\sqf{\bias{\hth}} + \var{\hth}$ both equal $\E{\hth^2} - 2\E{\hth}\th+\th^2$. Equality is transitive, so $\mselr{\hth}$ and $\sqf{\bias{\hth}} + \var{\hth}$ are equal to each other: $$\mselr{\hth} = \sqf{\bias{\hth}} + \var{\hth}$$ - diff --git a/renv.lock b/renv.lock index 3075a44c9..1e7c54d1f 100644 --- a/renv.lock +++ b/renv.lock @@ -29,11 +29,11 @@ }, "DBI": { "Package": "DBI", - "Version": "1.2.3", + "Version": "1.3.0", "Source": "Repository", "Title": "R Database Interface", - "Date": "2024-06-02", - "Authors@R": "c( person(\"R Special Interest Group on Databases (R-SIG-DB)\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"M\u00fcller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\") )", + "Date": "2026-02-11", + "Authors@R": "c( person(\"R Special Interest Group on Databases (R-SIG-DB)\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\") )", "Description": "A database interface definition for communication between R and relational database management systems. All classes in this package are virtual and need to be extended by the various R/DBMS implementations.", "License": "LGPL (>= 2.1)", "URL": "https://dbi.r-dbi.org, https://github.com/r-dbi/DBI", @@ -45,8 +45,9 @@ "Suggests": [ "arrow", "blob", + "callr", "covr", - "DBItest", + "DBItest (>= 1.8.2)", "dbplyr", "downlit", "dplyr", @@ -55,6 +56,8 @@ "knitr", "magrittr", "nanoarrow (>= 0.3.0.1)", + "otel", + "otelsdk", "RMariaDB", "rmarkdown", "rprojroot", @@ -67,13 +70,13 @@ "Config/autostyle/scope": "line_breaks", "Config/autostyle/strict": "false", "Config/Needs/check": "r-dbi/DBItest", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", "Config/Needs/website": "r-dbi/DBItest, r-dbi/dbitemplate, adbi, AzureKusto, bigrquery, DatabaseConnector, dittodb, duckdb, implyr, lazysf, odbc, pool, RAthena, IMSMWU/RClickhouse, RH2, RJDBC, RMariaDB, RMySQL, RPostgres, RPostgreSQL, RPresto, RSQLite, sergeant, sparklyr, withr", "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3.9000", "NeedsCompilation": "no", - "Author": "R Special Interest Group on Databases (R-SIG-DB) [aut], Hadley Wickham [aut], Kirill M\u00fcller [aut, cre] (), R Consortium [fnd]", - "Maintainer": "Kirill M\u00fcller ", + "Author": "R Special Interest Group on Databases (R-SIG-DB) [aut], Hadley Wickham [aut], Kirill Müller [aut, cre] (ORCID: ), R Consortium [fnd]", + "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "DEoptimR": { @@ -100,6 +103,44 @@ "Repository/R-Forge/DateTimeStamp": "2025-07-27 18:16:52", "NeedsCompilation": "no" }, + "DT": { + "Package": "DT", + "Version": "0.34.0", + "Source": "Repository", + "Type": "Package", + "Title": "A Wrapper of the JavaScript Library 'DataTables'", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = \"aut\"), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Xianying\", \"Tan\", role = \"aut\"), person(\"Garrick\", \"Aden-Buie\", , \"garrick@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"JJ\", \"Allaire\", role = \"ctb\"), person(\"Maximilian\", \"Girlich\", role = \"ctb\"), person(\"Greg\", \"Freedman Ellis\", role = \"ctb\"), person(\"Johannes\", \"Rauh\", role = \"ctb\"), person(\"SpryMedia Limited\", role = c(\"ctb\", \"cph\"), comment = \"DataTables in htmlwidgets/lib\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js in htmlwidgets/lib\"), person(\"Leon\", \"Gersen\", role = c(\"ctb\", \"cph\"), comment = \"noUiSlider in htmlwidgets/lib\"), person(\"Bartek\", \"Szopka\", role = c(\"ctb\", \"cph\"), comment = \"jquery.highlight.js in htmlwidgets/lib\"), person(\"Alex\", \"Pickering\", role = \"ctb\"), person(\"William\", \"Holmes\", role = \"ctb\"), person(\"Mikko\", \"Marttila\", role = \"ctb\"), person(\"Andres\", \"Quintero\", role = \"ctb\"), person(\"Stéphane\", \"Laurent\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Data objects in R can be rendered as HTML tables using the JavaScript library 'DataTables' (typically via R Markdown or Shiny). The 'DataTables' library has been included in this R package. The package name 'DT' is an abbreviation of 'DataTables'.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/rstudio/DT", + "BugReports": "https://github.com/rstudio/DT/issues", + "Imports": [ + "crosstalk", + "htmltools (>= 0.3.6)", + "htmlwidgets (>= 1.3)", + "jquerylib", + "jsonlite (>= 0.9.16)", + "magrittr", + "promises" + ], + "Suggests": [ + "bslib", + "future", + "httpuv", + "knitr (>= 1.8)", + "rmarkdown", + "shiny (>= 1.6)", + "testit", + "tibble" + ], + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut], Joe Cheng [aut], Xianying Tan [aut], Garrick Aden-Buie [aut, cre] (ORCID: ), JJ Allaire [ctb], Maximilian Girlich [ctb], Greg Freedman Ellis [ctb], Johannes Rauh [ctb], SpryMedia Limited [ctb, cph] (DataTables in htmlwidgets/lib), Brian Reavis [ctb, cph] (selectize.js in htmlwidgets/lib), Leon Gersen [ctb, cph] (noUiSlider in htmlwidgets/lib), Bartek Szopka [ctb, cph] (jquery.highlight.js in htmlwidgets/lib), Alex Pickering [ctb], William Holmes [ctb], Mikko Marttila [ctb], Andres Quintero [ctb], Stéphane Laurent [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Garrick Aden-Buie ", + "Repository": "CRAN" + }, "Deriv": { "Package": "Deriv", "Version": "4.2.0", @@ -206,7 +247,7 @@ "URL": "https://Matrix.R-forge.R-project.org", "BugReports": "https://R-forge.R-project.org/tracker/?atid=294&group_id=61", "Contact": "Matrix-authors@R-project.org", - "Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"mmaechler+Matrix@gmail.com\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Timothy A.\", \"Davis\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7614-6899\", \"SuiteSparse libraries\", \"collaborators listed in dir(system.file(\\\"doc\\\", \\\"SuiteSparse\\\", package=\\\"Matrix\\\"), pattern=\\\"License\\\", full.names=TRUE, recursive=TRUE)\")), person(\"George\", \"Karypis\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2753-1437\", \"METIS library\", \"Copyright: Regents of the University of Minnesota\")), person(\"Jason\", \"Riedy\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4345-4200\", \"GNU Octave's condest() and onenormest()\", \"Copyright: Regents of the University of California\")), person(\"Jens\", \"Oehlschl\u00e4gel\", role = \"ctb\", comment = \"initial nearPD()\"), person(\"R Core Team\", role = \"ctb\", comment = c(ROR = \"02zz1nj61\", \"base R's matrix implementation\")))", + "Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"mmaechler+Matrix@gmail.com\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Timothy A.\", \"Davis\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7614-6899\", \"SuiteSparse libraries\", \"collaborators listed in dir(system.file(\\\"doc\\\", \\\"SuiteSparse\\\", package=\\\"Matrix\\\"), pattern=\\\"License\\\", full.names=TRUE, recursive=TRUE)\")), person(\"George\", \"Karypis\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2753-1437\", \"METIS library\", \"Copyright: Regents of the University of Minnesota\")), person(\"Jason\", \"Riedy\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4345-4200\", \"GNU Octave's condest() and onenormest()\", \"Copyright: Regents of the University of California\")), person(\"Jens\", \"Oehlschlägel\", role = \"ctb\", comment = \"initial nearPD()\"), person(\"R Core Team\", role = \"ctb\", comment = c(ROR = \"02zz1nj61\", \"base R's matrix implementation\")))", "Depends": [ "R (>= 4.4)", "methods" @@ -234,7 +275,7 @@ "BuildResaveData": "no", "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "Douglas Bates [aut] (ORCID: ), Martin Maechler [aut, cre] (ORCID: ), Mikael Jagan [aut] (ORCID: ), Timothy A. Davis [ctb] (ORCID: , SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (ORCID: , METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (ORCID: , GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschl\u00e4gel [ctb] (initial nearPD()), R Core Team [ctb] (ROR: , base R's matrix implementation)", + "Author": "Douglas Bates [aut] (ORCID: ), Martin Maechler [aut, cre] (ORCID: ), Mikael Jagan [aut] (ORCID: ), Timothy A. Davis [ctb] (ORCID: , SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (ORCID: , METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (ORCID: , GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschlägel [ctb] (initial nearPD()), R Core Team [ctb] (ROR: , base R's matrix implementation)", "Maintainer": "Martin Maechler ", "Repository": "CRAN" }, @@ -335,12 +376,15 @@ }, "Rcpp": { "Package": "Rcpp", - "Version": "1.1.0", + "Version": "1.1.1-1.1", "Source": "Repository", "Title": "Seamless R and C++ Integration", - "Date": "2025-07-01", - "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"JJ\", \"Allaire\", role = \"aut\", comment = c(ORCID = \"0000-0003-0174-9868\")), person(\"Kevin\", \"Ushey\", role = \"aut\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Qiang\", \"Kou\", role = \"aut\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Nathan\", \"Russell\", role = \"aut\"), person(\"I\u00f1aki\", \"Ucar\", role = \"aut\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"John\", \"Chambers\", role = \"aut\"))", + "Date": "2026-04-19", + "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"JJ\", \"Allaire\", role = \"aut\", comment = c(ORCID = \"0000-0003-0174-9868\")), person(\"Kevin\", \"Ushey\", role = \"aut\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Qiang\", \"Kou\", role = \"aut\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Nathan\", \"Russell\", role = \"aut\"), person(\"Iñaki\", \"Ucar\", role = \"aut\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"John\", \"Chambers\", role = \"aut\"))", "Description": "The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at , the paper by Eddelbuettel and Francois (2011, ), the book by Eddelbuettel (2013, ) and the paper by Eddelbuettel and Balamuta (2018, ); see 'citation(\"Rcpp\")' for details.", + "Depends": [ + "R (>= 3.5.0)" + ], "Imports": [ "methods", "utils" @@ -357,20 +401,21 @@ "MailingList": "rcpp-devel@lists.r-forge.r-project.org", "RoxygenNote": "6.1.1", "Encoding": "UTF-8", + "VignetteBuilder": "Rcpp", "NeedsCompilation": "yes", - "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Romain Francois [aut] (ORCID: ), JJ Allaire [aut] (ORCID: ), Kevin Ushey [aut] (ORCID: ), Qiang Kou [aut] (ORCID: ), Nathan Russell [aut], I\u00f1aki Ucar [aut] (ORCID: ), Doug Bates [aut] (ORCID: ), John Chambers [aut]", + "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Romain Francois [aut] (ORCID: ), JJ Allaire [aut] (ORCID: ), Kevin Ushey [aut] (ORCID: ), Qiang Kou [aut] (ORCID: ), Nathan Russell [aut], Iñaki Ucar [aut] (ORCID: ), Doug Bates [aut] (ORCID: ), John Chambers [aut]", "Maintainer": "Dirk Eddelbuettel ", "Repository": "CRAN" }, "RcppArmadillo": { "Package": "RcppArmadillo", - "Version": "15.2.3-1", + "Version": "15.2.6-1", "Source": "Repository", "Type": "Package", "Title": "'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library", - "Date": "2025-12-16", + "Date": "2026-04-20", "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Binxiang\", \"Ni\", role = \"aut\"), person(\"Conrad\", \"Sanderson\", role = \"aut\", comment = c(ORCID = \"0000-0002-0049-4501\")))", - "Description": "'Armadillo' is a templated C++ linear algebra library aiming towards a good balance between speed and ease of use. It provides high-level syntax and functionality deliberately similar to Matlab. It is useful for algorithm development directly in C++, or quick conversion of research code into production environments. It provides efficient classes for vectors, matrices and cubes where dense and sparse matrices are supported. Integer, floating point and complex numbers are supported. A sophisticated expression evaluator (based on template meta-programming) automatically combines several operations to increase speed and efficiency. Dynamic evaluation automatically chooses optimal code paths based on detected matrix structures. Matrix decompositions are provided through integration with LAPACK, or one of its high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can automatically use 'OpenMP' multi-threading (parallelisation) to speed up computationally expensive operations. . The 'RcppArmadillo' package includes the header files from the 'Armadillo' library; users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. Starting from release 15.0.0, the minimum compilation standard is C++14 so 'Armadillo' version 14.6.3 is included as a fallback when an R package forces the C++11 standard. Package authors should set a '#define' to select the 'current' version, or select the 'legacy' version (also chosen as default) if they must. See 'GitHub issue #475' for details. . Since release 7.800.0, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.", + "Description": "'Armadillo' is a templated C++ linear algebra library aiming towards a good balance between speed and ease of use. It provides high-level syntax and functionality deliberately similar to Matlab. It is useful for algorithm development directly in C++, or quick conversion of research code into production environments. It provides efficient classes for vectors, matrices and cubes where dense and sparse matrices are supported. Integer, floating point and complex numbers are supported. A sophisticated expression evaluator (based on template meta-programming) automatically combines several operations to increase speed and efficiency. Dynamic evaluation automatically chooses optimal code paths based on detected matrix structures. Matrix decompositions are provided through integration with LAPACK, or one of its high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can automatically use 'OpenMP' multi-threading (parallelisation) to speed up computationally expensive operations. . The 'RcppArmadillo' package includes the header files from the 'Armadillo' library; users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. Starting from release 15.0.0, the minimum compilation standard is C++14. . Since release 7.800.0, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.", "License": "GPL (>= 2)", "LazyLoad": "yes", "Depends": [ @@ -380,7 +425,7 @@ "Rcpp" ], "Imports": [ - "Rcpp (>= 1.0.12)", + "Rcpp (>= 1.1.1)", "stats", "utils", "methods" @@ -395,6 +440,8 @@ "URL": "https://github.com/RcppCore/RcppArmadillo, https://dirk.eddelbuettel.com/code/rcpp.armadillo.html", "BugReports": "https://github.com/RcppCore/RcppArmadillo/issues", "RoxygenNote": "6.0.1", + "Encoding": "UTF-8", + "VignetteBuilder": "Rcpp", "NeedsCompilation": "yes", "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Romain Francois [aut] (ORCID: ), Doug Bates [aut] (ORCID: ), Binxiang Ni [aut], Conrad Sanderson [aut] (ORCID: )", "Maintainer": "Dirk Eddelbuettel ", @@ -469,13 +516,13 @@ }, "Rdpack": { "Package": "Rdpack", - "Version": "2.6.4", + "Version": "2.6.6", "Source": "Repository", "Type": "Package", "Title": "Update and Manipulate Rd Documentation Objects", "Authors@R": "c( person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"aut\", \"cre\"), email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(ORCID = \"0000-0003-2839-346X\")), person(given = \"Duncan\", family = \"Murdoch\", role = \"ctb\", email = \"murdoch.duncan@gmail.com\") )", "Description": "Functions for manipulation of R documentation objects, including functions reprompt() and ereprompt() for updating 'Rd' documentation for functions, methods and classes; 'Rd' macros for citations and import of references from 'bibtex' files for use in 'Rd' files and 'roxygen2' comments; 'Rd' macros for evaluating and inserting snippets of 'R' code and the results of its evaluation or creating graphics on the fly; and many functions for manipulation of references and Rd files.", - "URL": "https://geobosh.github.io/Rdpack/ (doc), https://github.com/GeoBosh/Rdpack (devel)", + "URL": "https://geobosh.github.io/Rdpack/ (doc), https://CRAN.R-project.org/package=Rdpack", "BugReports": "https://github.com/GeoBosh/Rdpack/issues", "Depends": [ "R (>= 2.15.0)", @@ -484,7 +531,7 @@ "Imports": [ "tools", "utils", - "rbibutils (>= 1.3)" + "rbibutils (> 2.4)" ], "Suggests": [ "grDevices", @@ -495,9 +542,10 @@ ], "License": "GPL (>= 2)", "LazyLoad": "yes", + "Encoding": "UTF-8", "RoxygenNote": "7.1.1", "NeedsCompilation": "no", - "Author": "Georgi N. Boshnakov [aut, cre] (), Duncan Murdoch [ctb]", + "Author": "Georgi N. Boshnakov [aut, cre] (ORCID: ), Duncan Murdoch [ctb]", "Maintainer": "Georgi N. Boshnakov ", "Repository": "CRAN" }, @@ -538,8 +586,7 @@ "NeedsCompilation": "yes", "Author": "Object-Oriented Programming Working Group [cph], Davis Vaughan [aut], Jim Hester [aut] (ORCID: ), Tomasz Kalinowski [aut], Will Landau [aut], Michael Lawrence [aut], Martin Maechler [aut] (ORCID: ), Luke Tierney [aut], Hadley Wickham [aut, cre] (ORCID: )", "Maintainer": "Hadley Wickham ", - "Repository": "CRAN", - "Date": "2026-04-22" + "Repository": "CRAN" }, "SparseM": { "Package": "SparseM", @@ -574,7 +621,7 @@ "Source": "Repository", "Type": "Package", "Title": "Template Model Builder: A General Random Effect Tool Inspired by 'ADMB'", - "Date": "2026-03-23", + "Date": "2026-03-22", "Authors@R": "c(person(\"Kasper\",\"Kristensen\",role=c(\"aut\",\"cre\",\"cph\"),email=\"kaskr@dtu.dk\"), person(\"Brad\",\"Bell\",role=\"cph\"), person(\"Hans\",\"Skaug\",role=\"ctb\"), person(\"Arni\",\"Magnusson\",role=\"ctb\"), person(\"Casper\",\"Berg\",role=\"ctb\"), person(\"Anders\",\"Nielsen\",role=\"ctb\"), person(\"Martin\",\"Maechler\",role=\"ctb\"), person(\"Theo\",\"Michelot\",role=\"ctb\"), person(\"Mollie\",\"Brooks\",role=\"ctb\"), person(\"Alex\",\"Forrence\",role=\"ctb\"), person(\"Christoffer\",\"Moesgaard Albertsen\",role=\"ctb\"), person(\"Cole\",\"Monnahan\",role=\"ctb\") )", "Maintainer": "Kasper Kristensen ", "Author": "Kasper Kristensen [aut, cre, cph], Brad Bell [cph], Hans Skaug [ctb], Arni Magnusson [ctb], Casper Berg [ctb], Anders Nielsen [ctb], Martin Maechler [ctb], Theo Michelot [ctb], Mollie Brooks [ctb], Alex Forrence [ctb], Christoffer Moesgaard Albertsen [ctb], Cole Monnahan [ctb]", @@ -601,44 +648,13 @@ "numDeriv", "parallel" ], - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", "Repository": "CRAN" }, - "TTR": { - "Package": "TTR", - "Version": "0.24.4", - "Source": "Repository", - "Type": "Package", - "Title": "Technical Trading Rules", - "Authors@R": "c( person(given=\"Joshua\", family=\"Ulrich\", role=c(\"cre\",\"aut\"), email=\"josh.m.ulrich@gmail.com\"), person(given=c(\"Ethan\",\"B.\"), family=\"Smith\", role=\"ctb\") )", - "Imports": [ - "xts (>= 0.10-0)", - "zoo", - "curl" - ], - "LinkingTo": [ - "xts" - ], - "Enhances": [ - "quantmod" - ], - "Suggests": [ - "RUnit" - ], - "Description": "A collection of over 50 technical indicators for creating technical trading rules. The package also provides fast implementations of common rolling-window functions, and several volatility calculations.", - "License": "GPL (>= 2)", - "URL": "https://github.com/joshuaulrich/TTR", - "BugReports": "https://github.com/joshuaulrich/TTR/issues", - "NeedsCompilation": "yes", - "Author": "Joshua Ulrich [cre, aut], Ethan B. Smith [ctb]", - "Maintainer": "Joshua Ulrich ", - "Repository": "https://packagemanager.posit.co/cran/latest", - "Encoding": "UTF-8" - }, "V8": { "Package": "V8", - "Version": "8.0.1", + "Version": "8.2.0", "Source": "Repository", "Type": "Package", "Title": "Embedded JavaScript and WebAssembly Engine for R", @@ -695,18 +711,18 @@ }, "arm": { "Package": "arm", - "Version": "1.14-4", + "Version": "1.15-3", "Source": "Repository", - "Date": "2024-4-1", + "Date": "2026-4-15", "Title": "Data Analysis Using Regression and Multilevel/Hierarchical Models", "Authors@R": "c(person(\"Andrew\", \"Gelman\", role = \"aut\", email = \"gelman@stat.columbia.edu\"), person(\"Yu-Sung\", \"Su\", role = c(\"aut\", \"cre\"), email = \"suyusung@tsinghua.edu.cn\", comment = c(ORCID = \"0000-0001-5021-8209\")), person(\"Masanao\", \"Yajima\", role = \"ctb\", email = \"yajima@bu.edu\"), person(\"Jennifer\", \"Hill\", role = \"ctb\", email = \"jennifer.hill@nyu.edu\"), person(\"Maria Grazia\", \"Pittau\", role = \"ctb\", email = \"grazia@stat.columbia.edu\"), person(\"Jouni\", \"Kerman\", role = \"ctb\", email = \"jouni@kerman.com\"), person(\"Tian\", \"Zheng\", role = \"ctb\", email = \"tzheng@stat.columbia.edu\"), person(\"Vincent\", \"Dorie\", role = \"ctb\", email = \"vjd4@nyu.edu\") )", - "Author": "Andrew Gelman [aut], Yu-Sung Su [aut, cre] (), Masanao Yajima [ctb], Jennifer Hill [ctb], Maria Grazia Pittau [ctb], Jouni Kerman [ctb], Tian Zheng [ctb], Vincent Dorie [ctb]", + "Author": "Andrew Gelman [aut], Yu-Sung Su [aut, cre] (ORCID: ), Masanao Yajima [ctb], Jennifer Hill [ctb], Maria Grazia Pittau [ctb], Jouni Kerman [ctb], Tian Zheng [ctb], Vincent Dorie [ctb]", "Maintainer": "Yu-Sung Su ", "BugReports": "https://github.com/suyusung/arm/issues/", "Depends": [ "R (>= 3.1.0)", "MASS", - "Matrix (>= 1.0)", + "Matrix (>= 1.6-1.1)", "stats", "lme4 (>= 1.0)" ], @@ -720,7 +736,7 @@ "utils" ], "Description": "Functions to accompany A. Gelman and J. Hill, Data Analysis Using Regression and Multilevel/Hierarchical Models, Cambridge University Press, 2007.", - "License": "GPL (> 2)", + "License": "GPL (>= 2)", "URL": "https://CRAN.R-project.org/package=arm", "NeedsCompilation": "no", "Repository": "CRAN" @@ -796,7 +812,7 @@ }, "backports": { "Package": "backports", - "Version": "1.5.0", + "Version": "1.5.1", "Source": "Repository", "Type": "Package", "Title": "Reimplementations of Functions Introduced Since R-3.0.0", @@ -812,16 +828,17 @@ "R (>= 3.0.0)" ], "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", - "Author": "Michel Lang [cre, aut] (), Duncan Murdoch [aut], R Core Team [aut]", + "RoxygenNote": "7.3.3", + "Author": "Michel Lang [cre, aut] (ORCID: ), Duncan Murdoch [aut], R Core Team [aut]", "Repository": "CRAN" }, "base64enc": { "Package": "base64enc", "Version": "0.1-6", "Source": "Repository", - "Title": "Tools for base64 encoding", - "Author": "Simon Urbanek ", + "Title": "Tools for 'base64' Encoding", + "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.nz, ORCID: )", + "Authors@R": "person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.nz\", ORCID=\"0000-0003-2297-1732\"))", "Maintainer": "Simon Urbanek ", "Depends": [ "R (>= 2.9.0)" @@ -829,12 +846,12 @@ "Enhances": [ "png" ], - "Description": "This package provides tools for handling base64 encoding. It is more flexible than the orphaned base64 package.", + "Description": "Tools for handling 'base64' encoding. It is more flexible than the orphaned 'base64' package.", "License": "GPL-2 | GPL-3", - "URL": "http://www.rforge.net/base64enc", + "URL": "https://www.rforge.net/base64enc", + "BugReports": "https://github.com/s-u/base64enc/issues", "NeedsCompilation": "yes", - "Repository": "CRAN", - "Date": "2026-02-02" + "Repository": "CRAN" }, "bayestestR": { "Package": "bayestestR", @@ -842,7 +859,7 @@ "Source": "Repository", "Type": "Package", "Title": "Understand and Describe Bayesian Models and Posterior Distributions", - "Authors@R": "c(person(given = \"Dominique\", family = \"Makowski\", role = c(\"aut\", \"cre\"), email = \"officialeasystats@gmail.com\", comment = c(ORCID = \"0000-0001-5375-9967\")), person(given = \"Daniel\", family = \"L\u00fcdecke\", role = \"aut\", email = \"d.luedecke@uke.de\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(given = \"Mattan S.\", family = \"Ben-Shachar\", role = \"aut\", email = \"matanshm@post.bgu.ac.il\", comment = c(ORCID = \"0000-0002-4287-4801\")), person(given = \"Indrajeet\", family = \"Patil\", role = \"aut\", email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(given = \"Micah K.\", family = \"Wilson\", role = \"aut\", email = \"micah.k.wilson@curtin.edu.au\", comment = c(ORCID = \"0000-0003-4143-7308\")), person(given = \"Brenton M.\", family = \"Wiernik\", role = \"aut\", email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\")), person(given = \"Paul-Christian\", family = \"B\u00fcrkner\", role = \"rev\", email = \"paul.buerkner@gmail.com\"), person(given = \"Tristan\", family = \"Mahr\", role = \"rev\", email = \"tristan.mahr@wisc.edu\", comment = c(ORCID = \"0000-0002-8890-5116\")), person(given = \"Henrik\", family = \"Singmann\", role = \"ctb\", email = \"singmann@gmail.com\", comment = c(ORCID = \"0000-0002-4842-3657\")), person(given = \"Quentin F.\", family = \"Gronau\", role = \"ctb\", comment = c(ORCID = \"0000-0001-5510-6943\")), person(given = \"Sam\", family = \"Crawley\", role = \"ctb\", email = \"sam@crawley.nz\", comment = c(ORCID = \"0000-0002-7847-0411\")))", + "Authors@R": "c(person(given = \"Dominique\", family = \"Makowski\", role = c(\"aut\", \"cre\"), email = \"officialeasystats@gmail.com\", comment = c(ORCID = \"0000-0001-5375-9967\")), person(given = \"Daniel\", family = \"Lüdecke\", role = \"aut\", email = \"d.luedecke@uke.de\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(given = \"Mattan S.\", family = \"Ben-Shachar\", role = \"aut\", email = \"matanshm@post.bgu.ac.il\", comment = c(ORCID = \"0000-0002-4287-4801\")), person(given = \"Indrajeet\", family = \"Patil\", role = \"aut\", email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(given = \"Micah K.\", family = \"Wilson\", role = \"aut\", email = \"micah.k.wilson@curtin.edu.au\", comment = c(ORCID = \"0000-0003-4143-7308\")), person(given = \"Brenton M.\", family = \"Wiernik\", role = \"aut\", email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\")), person(given = \"Paul-Christian\", family = \"Bürkner\", role = \"rev\", email = \"paul.buerkner@gmail.com\"), person(given = \"Tristan\", family = \"Mahr\", role = \"rev\", email = \"tristan.mahr@wisc.edu\", comment = c(ORCID = \"0000-0002-8890-5116\")), person(given = \"Henrik\", family = \"Singmann\", role = \"ctb\", email = \"singmann@gmail.com\", comment = c(ORCID = \"0000-0002-4842-3657\")), person(given = \"Quentin F.\", family = \"Gronau\", role = \"ctb\", comment = c(ORCID = \"0000-0001-5510-6943\")), person(given = \"Sam\", family = \"Crawley\", role = \"ctb\", email = \"sam@crawley.nz\", comment = c(ORCID = \"0000-0002-7847-0411\")))", "Maintainer": "Dominique Makowski ", "Description": "Provides utilities to describe posterior distributions and Bayesian models. It includes point-estimates such as Maximum A Posteriori (MAP), measures of dispersion (Highest Density Interval - HDI; Kruschke, 2015 ) and indices used for null-hypothesis testing (such as ROPE percentage, pd and Bayes factors). References: Makowski et al. (2021) .", "Depends": [ @@ -913,7 +930,7 @@ "Config/Needs/website": "easystats/easystatstemplate", "Config/Needs/check": "stan-dev/cmdstanr", "NeedsCompilation": "no", - "Author": "Dominique Makowski [aut, cre] (ORCID: ), Daniel L\u00fcdecke [aut] (ORCID: ), Mattan S. Ben-Shachar [aut] (ORCID: ), Indrajeet Patil [aut] (ORCID: ), Micah K. Wilson [aut] (ORCID: ), Brenton M. Wiernik [aut] (ORCID: ), Paul-Christian B\u00fcrkner [rev], Tristan Mahr [rev] (ORCID: ), Henrik Singmann [ctb] (ORCID: ), Quentin F. Gronau [ctb] (ORCID: ), Sam Crawley [ctb] (ORCID: )", + "Author": "Dominique Makowski [aut, cre] (ORCID: ), Daniel Lüdecke [aut] (ORCID: ), Mattan S. Ben-Shachar [aut] (ORCID: ), Indrajeet Patil [aut] (ORCID: ), Micah K. Wilson [aut] (ORCID: ), Brenton M. Wiernik [aut] (ORCID: ), Paul-Christian Bürkner [rev], Tristan Mahr [rev] (ORCID: ), Henrik Singmann [ctb] (ORCID: ), Quentin F. Gronau [ctb] (ORCID: ), Sam Crawley [ctb] (ORCID: )", "Repository": "CRAN" }, "bigD": { @@ -967,7 +984,7 @@ "Version": "4.6.0", "Source": "Repository", "Title": "Classes and Methods for Fast Memory-Efficient Boolean Selections", - "Authors@R": "c( person(\"Michael\", \"Chirico\", email = \"MichaelChirico4@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jens\", \"Oehlschl\u00e4gel\", role = \"aut\"), person(\"Brian\", \"Ripley\", role = \"ctb\") )", + "Authors@R": "c( person(\"Michael\", \"Chirico\", email = \"MichaelChirico4@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jens\", \"Oehlschlägel\", role = \"aut\"), person(\"Brian\", \"Ripley\", role = \"ctb\") )", "Depends": [ "R (>= 3.4.0)" ], @@ -991,41 +1008,43 @@ "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "NeedsCompilation": "yes", - "Author": "Michael Chirico [aut, cre], Jens Oehlschl\u00e4gel [aut], Brian Ripley [ctb]", + "Author": "Michael Chirico [aut, cre], Jens Oehlschlägel [aut], Brian Ripley [ctb]", "Maintainer": "Michael Chirico ", "Repository": "CRAN" }, "bit64": { "Package": "bit64", - "Version": "4.6.0-1", + "Version": "4.8.0", "Source": "Repository", "Title": "A S3 Class for Vectors of 64bit Integers", - "Authors@R": "c( person(\"Michael\", \"Chirico\", email = \"michaelchirico4@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jens\", \"Oehlschl\u00e4gel\", role = \"aut\"), person(\"Leonardo\", \"Silvestri\", role = \"ctb\"), person(\"Ofek\", \"Shilon\", role = \"ctb\") )", + "Authors@R": "c( person(\"Michael\", \"Chirico\", email=\"michaelchirico4@gmail.com\", role=c(\"aut\", \"cre\")), person(\"Jens\", \"Oehlschlägel\", role=\"aut\"), person(\"Leonardo\", \"Silvestri\", role=\"ctb\"), person(\"Ofek\", \"Shilon\", role=\"ctb\"), person(\"Christian\", \"Ullerich\", role=\"ctb\") )", "Depends": [ - "R (>= 3.4.0)", - "bit (>= 4.0.0)" + "R (>= 3.5.0)" ], "Description": "Package 'bit64' provides serializable S3 atomic 64bit (signed) integers. These are useful for handling database keys and exact counting in +-2^63. WARNING: do not use them as replacement for 32bit integers, integer64 are not supported for subscripting by R-core and they have different semantics when combined with double, e.g. integer64 + double => integer64. Class integer64 can be used in vectors, matrices, arrays and data.frames. Methods are available for coercion from and to logicals, integers, doubles, characters and factors as well as many elementwise and summary functions. Many fast algorithmic operations such as 'match' and 'order' support inter- active data exploration and manipulation and optionally leverage caching.", "License": "GPL-2 | GPL-3", "LazyLoad": "yes", "ByteCompile": "yes", - "URL": "https://github.com/r-lib/bit64", + "URL": "https://github.com/r-lib/bit64, https://bit64.r-lib.org", "Encoding": "UTF-8", "Imports": [ + "bit (>= 4.0.0)", "graphics", "methods", "stats", "utils" ], "Suggests": [ - "testthat (>= 3.0.3)", + "patrick (>= 0.3.0)", + "testthat (>= 3.3.0)", "withr" ], "Config/testthat/edition": "3", - "Config/needs/development": "testthat", - "RoxygenNote": "7.3.2", + "Config/Needs/development": "patrick, testthat", + "Config/Needs/website": "tidyverse/tidytemplate", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Michael Chirico [aut, cre], Jens Oehlschl\u00e4gel [aut], Leonardo Silvestri [ctb], Ofek Shilon [ctb]", + "Author": "Michael Chirico [aut, cre], Jens Oehlschlägel [aut], Leonardo Silvestri [ctb], Ofek Shilon [ctb], Christian Ullerich [ctb]", "Maintainer": "Michael Chirico ", "Repository": "CRAN" }, @@ -1047,10 +1066,10 @@ }, "blob": { "Package": "blob", - "Version": "1.2.4", + "Version": "1.3.0", "Source": "Repository", "Title": "A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS')", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"M\u00fcller\", , \"kirill@cynkra.com\", role = \"cre\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = \"cre\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", "Description": "R's raw vector is useful for storing a single binary object. What if you want to put a vector of them in a data frame? The 'blob' package provides the blob object, a list of raw vectors, suitable for use as a column in data frame.", "License": "MIT + file LICENSE", "URL": "https://blob.tidyverse.org, https://github.com/tidyverse/blob", @@ -1064,16 +1083,17 @@ "covr", "crayon", "pillar (>= 1.2.1)", - "testthat" + "testthat (>= 3.0.0)" ], "Config/autostyle/scope": "line_breaks", "Config/autostyle/strict": "false", "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3.9000", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut], Kirill M\u00fcller [cre], RStudio [cph, fnd]", - "Maintainer": "Kirill M\u00fcller ", + "Author": "Hadley Wickham [aut], Kirill Müller [cre], RStudio [cph, fnd]", + "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "boot": { @@ -1129,7 +1149,7 @@ "Version": "1.1.5", "Source": "Repository", "Title": "Basic R Input Output", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Functions to handle basic input output, these functions always read and write UTF-8 (8-bit Unicode Transformation Format) files and provide more explicit control over line endings.", "License": "MIT + file LICENSE", "URL": "https://brio.r-lib.org, https://github.com/r-lib/brio", @@ -1146,8 +1166,8 @@ "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "NeedsCompilation": "yes", - "Author": "Jim Hester [aut] (), G\u00e1bor Cs\u00e1rdi [aut, cre], Posit Software, PBC [cph, fnd]", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Jim Hester [aut] (), Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd]", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "broom": { @@ -1271,7 +1291,7 @@ "NeedsCompilation": "no", "Author": "David Robinson [aut], Alex Hayes [aut] (ORCID: ), Simon Couch [aut] (ORCID: ), Emil Hvitfeldt [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: ), Indrajeet Patil [ctb] (ORCID: ), Derek Chiu [ctb], Matthieu Gomez [ctb], Boris Demeshev [ctb], Dieter Menne [ctb], Benjamin Nutter [ctb], Luke Johnston [ctb], Ben Bolker [ctb], Francois Briatte [ctb], Jeffrey Arnold [ctb], Jonah Gabry [ctb], Luciano Selzer [ctb], Gavin Simpson [ctb], Jens Preussner [ctb], Jay Hesselberth [ctb], Hadley Wickham [ctb], Matthew Lincoln [ctb], Alessandro Gasparini [ctb], Lukasz Komsta [ctb], Frederick Novometsky [ctb], Wilson Freitas [ctb], Michelle Evans [ctb], Jason Cory Brunson [ctb], Simon Jackson [ctb], Ben Whalley [ctb], Karissa Whiting [ctb], Yves Rosseel [ctb], Michael Kuehn [ctb], Jorge Cimentada [ctb], Erle Holgersen [ctb], Karl Dunkle Werner [ctb] (ORCID: ), Ethan Christensen [ctb], Steven Pav [ctb], Paul PJ [ctb], Ben Schneider [ctb], Patrick Kennedy [ctb], Lily Medina [ctb], Brian Fannin [ctb], Jason Muhlenkamp [ctb], Matt Lehman [ctb], Bill Denney [ctb] (ORCID: ), Nic Crane [ctb], Andrew Bates [ctb], Vincent Arel-Bundock [ctb] (ORCID: ), Hideaki Hayashi [ctb], Luis Tobalina [ctb], Annie Wang [ctb], Wei Yang Tham [ctb], Clara Wang [ctb], Abby Smith [ctb] (ORCID: ), Jasper Cooper [ctb] (ORCID: ), E Auden Krauska [ctb] (ORCID: ), Alex Wang [ctb], Malcolm Barrett [ctb] (ORCID: ), Charles Gray [ctb] (ORCID: ), Jared Wilber [ctb], Vilmantas Gegzna [ctb] (ORCID: ), Eduard Szoecs [ctb], Frederik Aust [ctb] (ORCID: ), Angus Moore [ctb], Nick Williams [ctb], Marius Barth [ctb] (ORCID: ), Bruna Wundervald [ctb] (ORCID: ), Joyce Cahoon [ctb] (ORCID: ), Grant McDermott [ctb] (ORCID: ), Kevin Zarca [ctb], Shiro Kuriwaki [ctb] (ORCID: ), Lukas Wallrich [ctb] (ORCID: ), James Martherus [ctb] (ORCID: ), Chuliang Xiao [ctb] (ORCID: ), Joseph Larmarange [ctb], Max Kuhn [ctb], Michal Bojanowski [ctb], Hakon Malmedal [ctb], Clara Wang [ctb], Sergio Oller [ctb], Luke Sonnet [ctb], Jim Hester [ctb], Ben Schneider [ctb], Bernie Gray [ctb] (ORCID: ), Mara Averick [ctb], Aaron Jacobs [ctb], Andreas Bender [ctb], Sven Templer [ctb], Paul-Christian Buerkner [ctb], Matthew Kay [ctb], Erwan Le Pennec [ctb], Johan Junkka [ctb], Hao Zhu [ctb], Benjamin Soltoff [ctb], Zoe Wilkinson Saldana [ctb], Tyler Littlefield [ctb], Charles T. Gray [ctb], Shabbh E. Banks [ctb], Serina Robinson [ctb], Roger Bivand [ctb], Riinu Ots [ctb], Nicholas Williams [ctb], Nina Jakobsen [ctb], Michael Weylandt [ctb], Lisa Lendway [ctb], Karl Hailperin [ctb], Josue Rodriguez [ctb], Jenny Bryan [ctb], Chris Jarvis [ctb], Greg Macfarlane [ctb], Brian Mannakee [ctb], Drew Tyre [ctb], Shreyas Singh [ctb], Laurens Geffert [ctb], Hong Ooi [ctb], Henrik Bengtsson [ctb], Eduard Szocs [ctb], David Hugh-Jones [ctb], Matthieu Stigler [ctb], Hugo Tavares [ctb] (ORCID: ), R. Willem Vervoort [ctb], Brenton M. Wiernik [ctb], Josh Yamamoto [ctb], Jasme Lee [ctb], Taren Sanders [ctb] (ORCID: ), Ilaria Prosdocimi [ctb] (ORCID: ), Daniel D. Sjoberg [ctb] (ORCID: ), Alex Reinhart [ctb] (ORCID: )", "Maintainer": "Emil Hvitfeldt ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "broom.helpers": { "Package": "broom.helpers", @@ -1369,16 +1389,16 @@ }, "broom.mixed": { "Package": "broom.mixed", - "Version": "0.2.9.6", + "Version": "0.2.9.7", "Source": "Repository", "Type": "Package", "Title": "Tidying Methods for Mixed Models", - "Authors@R": "c( person(\"Ben\", \"Bolker\", email = \"bolker@mcmaster.ca\", role = c(\"aut\", \"cre\"), comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"David\", \"Robinson\", email = \"admiral.david@gmail.com\", role = \"aut\"), person(\"Dieter\", \"Menne\", role = \"ctb\"), person(\"Jonah\", \"Gabry\", role = \"ctb\"), person(\"Paul\", \"Buerkner\", role = \"ctb\"), person(\"Christopher\", \"Hua\", role = \"ctb\"), person(\"William\", \"Petry\", role = \"ctb\", comment=c(ORCID=\"0000-0002-5230-5987\")), person(\"Joshua\", \"Wiley\", role = \"ctb\", comment=c(ORCID=\"0000-0002-0271-6702\")), person(\"Patrick\", \"Kennedy\", role = \"ctb\"), person(\"Eduard\", \"Sz\u00f6cs\", role = \"ctb\", comment=c(ORCID = \"0000-0001-5376-1194\", sponsor = \"BASF SE\")), person(\"Indrajeet\", \"Patil\", role=\"ctb\"), person(\"Vincent\", \"Arel-Bundock\", email = \"vincent.arel-bundock@umontreal.ca\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2042-7063\")), person(\"Bill\", \"Denney\", role = \"ctb\"), person(\"Cory\", \"Brunson\", role = \"ctb\"), person(\"Joe\", \"Wasserman\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9705-1853\")), person(\"Alexey\", \"Stukalov\", role = \"ctb\"), person(\"Matthieu\", \"Bruneaux\", role = \"ctb\") )", + "Authors@R": "c( person(\"Ben\", \"Bolker\", email = \"bolker@mcmaster.ca\", role = c(\"aut\", \"cre\"), comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"David\", \"Robinson\", email = \"admiral.david@gmail.com\", role = \"aut\"), person(\"Dieter\", \"Menne\", role = \"ctb\"), person(\"Jonah\", \"Gabry\", role = \"ctb\"), person(\"Paul\", \"Buerkner\", role = \"ctb\"), person(\"Christopher\", \"Hua\", role = \"ctb\"), person(\"William\", \"Petry\", role = \"ctb\", comment=c(ORCID=\"0000-0002-5230-5987\")), person(\"Joshua\", \"Wiley\", role = \"ctb\", comment=c(ORCID=\"0000-0002-0271-6702\")), person(\"Patrick\", \"Kennedy\", role = \"ctb\"), person(\"Eduard\", \"Szöcs\", role = \"ctb\", comment=c(ORCID = \"0000-0001-5376-1194\", sponsor = \"BASF SE\")), person(\"Indrajeet\", \"Patil\", role=\"ctb\"), person(\"Vincent\", \"Arel-Bundock\", email = \"vincent.arel-bundock@umontreal.ca\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2042-7063\")), person(\"Bill\", \"Denney\", role = \"ctb\"), person(\"Cory\", \"Brunson\", role = \"ctb\"), person(\"Joe\", \"Wasserman\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9705-1853\")), person(\"Alexey\", \"Stukalov\", role = \"ctb\"), person(\"Matthieu\", \"Bruneaux\", role = \"ctb\") )", "Maintainer": "Ben Bolker ", "Description": "Convert fitted objects from various R mixed-model packages into tidy data frames along the lines of the 'broom' package. The package provides three S3 generics for each model: tidy(), which summarizes a model's statistical findings such as coefficients of a regression; augment(), which adds columns to the original data such as predictions, residuals and cluster assignments; and glance(), which provides a one-row summary of model-level statistics.", "Imports": [ "broom", - "coda", + "coda (>= 0.19-4.1)", "dplyr", "forcats", "methods", @@ -1406,6 +1426,7 @@ "MCMCglmm", "mediation", "mgcv", + "mice", "ordinal", "pander", "pbkrtest", @@ -1423,14 +1444,14 @@ "Encoding": "UTF-8", "Additional_repositories": "http://bbolker.github.io/drat", "VignetteBuilder": "knitr", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Ben Bolker [aut, cre] (), David Robinson [aut], Dieter Menne [ctb], Jonah Gabry [ctb], Paul Buerkner [ctb], Christopher Hua [ctb], William Petry [ctb] (), Joshua Wiley [ctb] (), Patrick Kennedy [ctb], Eduard Sz\u00f6cs [ctb] (, BASF SE), Indrajeet Patil [ctb], Vincent Arel-Bundock [ctb] (), Bill Denney [ctb], Cory Brunson [ctb], Joe Wasserman [ctb] (), Alexey Stukalov [ctb], Matthieu Bruneaux [ctb]", + "Author": "Ben Bolker [aut, cre] (ORCID: ), David Robinson [aut], Dieter Menne [ctb], Jonah Gabry [ctb], Paul Buerkner [ctb], Christopher Hua [ctb], William Petry [ctb] (ORCID: ), Joshua Wiley [ctb] (ORCID: ), Patrick Kennedy [ctb], Eduard Szöcs [ctb] (ORCID: , sponsor: BASF SE), Indrajeet Patil [ctb], Vincent Arel-Bundock [ctb] (ORCID: ), Bill Denney [ctb], Cory Brunson [ctb], Joe Wasserman [ctb] (ORCID: ), Alexey Stukalov [ctb], Matthieu Bruneaux [ctb]", "Repository": "CRAN" }, "bslib": { "Package": "bslib", - "Version": "0.9.0", + "Version": "0.10.0", "Source": "Repository", "Title": "Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'", "Authors@R": "c( person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Garrick\", \"Aden-Buie\", , \"garrick@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Javi\", \"Aguilar\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap colorpicker library\"), person(\"Thomas\", \"Park\", role = c(\"ctb\", \"cph\"), comment = \"Bootswatch library\"), person(, \"PayPal\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap accessibility plugin\") )", @@ -1456,16 +1477,18 @@ "sass (>= 0.4.9)" ], "Suggests": [ + "brand.yml", "bsicons", "curl", "fontawesome", "future", "ggplot2", "knitr", + "lattice", "magrittr", "rappdirs", "rmarkdown (>= 2.7)", - "shiny (> 1.8.1)", + "shiny (>= 1.11.1)", "testthat", "thematic", "tools", @@ -1480,10 +1503,10 @@ "Config/testthat/parallel": "true", "Config/testthat/start-first": "zzzz-bs-sass, fonts, zzz-precompile, theme-*, rmd-*", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "Collate": "'accordion.R' 'breakpoints.R' 'bs-current-theme.R' 'bs-dependencies.R' 'bs-global.R' 'bs-remove.R' 'bs-theme-layers.R' 'bs-theme-preset-bootswatch.R' 'bs-theme-preset-brand.R' 'bs-theme-preset-builtin.R' 'bs-theme-preset.R' 'utils.R' 'bs-theme-preview.R' 'bs-theme-update.R' 'bs-theme.R' 'bslib-package.R' 'buttons.R' 'card.R' 'deprecated.R' 'files.R' 'fill.R' 'imports.R' 'input-dark-mode.R' 'input-switch.R' 'layout.R' 'nav-items.R' 'nav-update.R' 'navbar_options.R' 'navs-legacy.R' 'navs.R' 'onLoad.R' 'page.R' 'popover.R' 'precompiled.R' 'print.R' 'shiny-devmode.R' 'sidebar.R' 'staticimports.R' 'tooltip.R' 'utils-deps.R' 'utils-shiny.R' 'utils-tags.R' 'value-box.R' 'version-default.R' 'versions.R'", + "RoxygenNote": "7.3.3", + "Collate": "'accordion.R' 'breakpoints.R' 'bs-current-theme.R' 'bs-dependencies.R' 'bs-global.R' 'bs-remove.R' 'bs-theme-layers.R' 'bs-theme-preset-bootswatch.R' 'bs-theme-preset-brand.R' 'bs-theme-preset-builtin.R' 'bs-theme-preset.R' 'utils.R' 'bs-theme-preview.R' 'bs-theme-update.R' 'bs-theme.R' 'bslib-package.R' 'buttons.R' 'card.R' 'deprecated.R' 'files.R' 'fill.R' 'imports.R' 'input-code-editor.R' 'input-dark-mode.R' 'input-submit.R' 'input-switch.R' 'layout.R' 'nav-items.R' 'nav-update.R' 'navbar_options.R' 'navs-legacy.R' 'navs.R' 'onLoad.R' 'page.R' 'popover.R' 'precompiled.R' 'print.R' 'shiny-devmode.R' 'sidebar.R' 'staticimports.R' 'toast.R' 'tooltip.R' 'utils-deps.R' 'utils-shiny.R' 'utils-tags.R' 'value-box.R' 'version-default.R' 'versions.R'", "NeedsCompilation": "no", - "Author": "Carson Sievert [aut, cre] (), Joe Cheng [aut], Garrick Aden-Buie [aut] (), Posit Software, PBC [cph, fnd], Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Javi Aguilar [ctb, cph] (Bootstrap colorpicker library), Thomas Park [ctb, cph] (Bootswatch library), PayPal [ctb, cph] (Bootstrap accessibility plugin)", + "Author": "Carson Sievert [aut, cre] (ORCID: ), Joe Cheng [aut], Garrick Aden-Buie [aut] (ORCID: ), Posit Software, PBC [cph, fnd], Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Javi Aguilar [ctb, cph] (Bootstrap colorpicker library), Thomas Park [ctb, cph] (Bootswatch library), PayPal [ctb, cph] (Bootstrap accessibility plugin)", "Maintainer": "Carson Sievert ", "Repository": "CRAN" }, @@ -1518,7 +1541,7 @@ "Version": "3.7.6", "Source": "Repository", "Title": "Call R from R", - "Authors@R": "c( person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )", "Description": "It is sometimes useful to perform a computation in a separate R process, without affecting the current R process at all. This packages does exactly that.", "License": "MIT + file LICENSE", "URL": "https://callr.r-lib.org, https://github.com/r-lib/callr", @@ -1547,17 +1570,17 @@ "Language": "en-US", "RoxygenNote": "7.3.1.9000", "NeedsCompilation": "no", - "Author": "G\u00e1bor Cs\u00e1rdi [aut, cre, cph] (), Winston Chang [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph, fnd]", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Gábor Csárdi [aut, cre, cph] (), Winston Chang [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph, fnd]", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "car": { "Package": "car", - "Version": "3.1-3", + "Version": "3.1-5", "Source": "Repository", - "Date": "2024-09-23", + "Date": "2026-01-05", "Title": "Companion to Applied Regression", - "Authors@R": "c(person(\"John\", \"Fox\", role = c(\"aut\", \"cre\"), email = \"jfox@mcmaster.ca\"), person(\"Sanford\", \"Weisberg\", role = \"aut\", email = \"sandy@umn.edu\"), person(\"Brad\", \"Price\", role = \"aut\", email = \"brad.price@mail.wvu.edu\"), person(\"Daniel\", \"Adler\", role=\"ctb\"), person(\"Douglas\", \"Bates\", role = \"ctb\"), person(\"Gabriel\", \"Baud-Bovy\", role = \"ctb\"), person(\"Ben\", \"Bolker\", role=\"ctb\"), person(\"Steve\", \"Ellison\", role=\"ctb\"), person(\"David\", \"Firth\", role = \"ctb\"), person(\"Michael\", \"Friendly\", role = \"ctb\"), person(\"Gregor\", \"Gorjanc\", role = \"ctb\"), person(\"Spencer\", \"Graves\", role = \"ctb\"), person(\"Richard\", \"Heiberger\", role = \"ctb\"), person(\"Pavel\", \"Krivitsky\", role = \"ctb\"), person(\"Rafael\", \"Laboissiere\", role = \"ctb\"), person(\"Martin\", \"Maechler\", role=\"ctb\"), person(\"Georges\", \"Monette\", role = \"ctb\"), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Henric\", \"Nilsson\", role = \"ctb\"), person(\"Derek\", \"Ogle\", role = \"ctb\"), person(\"Brian\", \"Ripley\", role = \"ctb\"), person(\"Tom\", \"Short\", role=\"ctb\"), person(\"William\", \"Venables\", role = \"ctb\"), person(\"Steve\", \"Walker\", role=\"ctb\"), person(\"David\", \"Winsemius\", role=\"ctb\"), person(\"Achim\", \"Zeileis\", role = \"ctb\"), person(\"R-Core\", role=\"ctb\"))", + "Authors@R": "c(person(\"John\", \"Fox\", role =\"aut\" , email = \"jfox@mcmaster.ca\"), person(\"Sanford\", \"Weisberg\", role = \"aut\", email = \"sandy@umn.edu\"), person(\"Brad\", \"Price\", role = c(\"aut\", \"cre\"), email = \"brad.price@mail.wvu.edu\"), person(\"Daniel\", \"Adler\", role=\"ctb\"), person(\"Douglas\", \"Bates\", role = \"ctb\"), person(\"Gabriel\", \"Baud-Bovy\", role = \"ctb\"), person(\"Ben\", \"Bolker\", role=\"ctb\"), person(\"Steve\", \"Ellison\", role=\"ctb\"), person(\"David\", \"Firth\", role = \"ctb\"), person(\"Michael\", \"Friendly\", role = \"ctb\"), person(\"Gregor\", \"Gorjanc\", role = \"ctb\"), person(\"Spencer\", \"Graves\", role = \"ctb\"), person(\"Richard\", \"Heiberger\", role = \"ctb\"), person(\"Pavel\", \"Krivitsky\", role = \"ctb\"), person(\"Rafael\", \"Laboissiere\", role = \"ctb\"), person(\"Martin\", \"Maechler\", role=\"ctb\"), person(\"Georges\", \"Monette\", role = \"ctb\"), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Henric\", \"Nilsson\", role = \"ctb\"), person(\"Derek\", \"Ogle\", role = \"ctb\"), person(\"Iain\", \"Proctor\", role = \"ctb\"), person(\"Brian\", \"Ripley\", role = \"ctb\"), person(\"Tom\", \"Short\", role=\"ctb\"), person(\"William\", \"Venables\", role = \"ctb\"), person(\"Steve\", \"Walker\", role=\"ctb\"), person(\"David\", \"Winsemius\", role=\"ctb\"), person(\"Achim\", \"Zeileis\", role = \"ctb\"), person(\"R-Core\", role=\"ctb\"))", "Depends": [ "R (>= 3.5.0)", "carData (>= 3.0-0)" @@ -1602,20 +1625,20 @@ "LazyLoad": "yes", "Description": "Functions to Accompany J. Fox and S. Weisberg, An R Companion to Applied Regression, Third Edition, Sage, 2019.", "License": "GPL (>= 2)", - "URL": "https://r-forge.r-project.org/projects/car/, https://CRAN.R-project.org/package=car, https://www.john-fox.ca/Companion/index.html", + "URL": "https://github.com/bprice2652/car_repo, https://CRAN.R-project.org/package=car, https://z.umn.edu/carbook", "VignetteBuilder": "knitr", "NeedsCompilation": "no", - "Author": "John Fox [aut, cre], Sanford Weisberg [aut], Brad Price [aut], Daniel Adler [ctb], Douglas Bates [ctb], Gabriel Baud-Bovy [ctb], Ben Bolker [ctb], Steve Ellison [ctb], David Firth [ctb], Michael Friendly [ctb], Gregor Gorjanc [ctb], Spencer Graves [ctb], Richard Heiberger [ctb], Pavel Krivitsky [ctb], Rafael Laboissiere [ctb], Martin Maechler [ctb], Georges Monette [ctb], Duncan Murdoch [ctb], Henric Nilsson [ctb], Derek Ogle [ctb], Brian Ripley [ctb], Tom Short [ctb], William Venables [ctb], Steve Walker [ctb], David Winsemius [ctb], Achim Zeileis [ctb], R-Core [ctb]", - "Maintainer": "John Fox ", + "Author": "John Fox [aut], Sanford Weisberg [aut], Brad Price [aut, cre], Daniel Adler [ctb], Douglas Bates [ctb], Gabriel Baud-Bovy [ctb], Ben Bolker [ctb], Steve Ellison [ctb], David Firth [ctb], Michael Friendly [ctb], Gregor Gorjanc [ctb], Spencer Graves [ctb], Richard Heiberger [ctb], Pavel Krivitsky [ctb], Rafael Laboissiere [ctb], Martin Maechler [ctb], Georges Monette [ctb], Duncan Murdoch [ctb], Henric Nilsson [ctb], Derek Ogle [ctb], Iain Proctor [ctb], Brian Ripley [ctb], Tom Short [ctb], William Venables [ctb], Steve Walker [ctb], David Winsemius [ctb], Achim Zeileis [ctb], R-Core [ctb]", + "Maintainer": "Brad Price ", "Repository": "CRAN" }, "carData": { "Package": "carData", - "Version": "3.0-5", + "Version": "3.0-6", "Source": "Repository", - "Date": "2022-01-05", + "Date": "2026-01-30", "Title": "Companion to Applied Regression Data Sets", - "Authors@R": "c(person(\"John\", \"Fox\", role = c(\"aut\", \"cre\"), email = \"jfox@mcmaster.ca\"), person(\"Sanford\", \"Weisberg\", role = \"aut\", email = \"sandy@umn.edu\"), person(\"Brad\", \"Price\", role = \"aut\", email = \"brad.price@mail.wvu.edu\"))", + "Authors@R": "c(person(\"John\", \"Fox\", role = \"aut\", email = \"jfox@mcmaster.ca\"), person(\"Sanford\", \"Weisberg\", role = \"aut\", email = \"sandy@umn.edu\"), person(\"Brad\", \"Price\", role = c(\"aut\", \"cre\"), email = \"brad.price@mail.wvu.edu\"))", "Depends": [ "R (>= 3.5.0)" ], @@ -1626,18 +1649,15 @@ "LazyData": "yes", "Description": "Datasets to Accompany J. Fox and S. Weisberg, An R Companion to Applied Regression, Third Edition, Sage (2019).", "License": "GPL (>= 2)", - "URL": "https://r-forge.r-project.org/projects/car/, https://CRAN.R-project.org/package=carData, https://socialsciences.mcmaster.ca/jfox/Books/Companion/index.html", - "Author": "John Fox [aut, cre], Sanford Weisberg [aut], Brad Price [aut]", - "Maintainer": "John Fox ", - "Repository": "CRAN", - "Repository/R-Forge/Project": "car", - "Repository/R-Forge/Revision": "694", - "Repository/R-Forge/DateTimeStamp": "2022-01-05 19:40:37", - "NeedsCompilation": "no" + "URL": "https://r-forge.r-project.org/projects/car/, https://CRAN.R-project.org/package=carData, https://z.umn.edu/carbook", + "NeedsCompilation": "no", + "Author": "John Fox [aut], Sanford Weisberg [aut], Brad Price [aut, cre]", + "Maintainer": "Brad Price ", + "Repository": "CRAN" }, "cards": { "Package": "cards", - "Version": "0.7.1.9008", + "Version": "0.7.1.9011", "Source": "GitHub", "Title": "Analysis Results Data", "Authors@R": "c( person(\"Daniel D.\", \"Sjoberg\", , \"danield.sjoberg@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-0862-2018\")), person(\"Becca\", \"Krouse\", , \"becca.z.krouse@gsk.com\", role = \"aut\"), person(\"Emily\", \"de la Rua\", , \"emily.de_la_rua@contractors.roche.com\", role = \"aut\", comment = c(ORCID = \"0009-0000-8738-5561\")), person(\"Malan\", \"Bosman\", , \"malanbos@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-3020-195X\")), person(\"F. Hoffmann-La Roche AG\", role = c(\"cph\", \"fnd\")), person(\"GlaxoSmithKline Research & Development Limited\", role = \"cph\") )", @@ -1673,11 +1693,11 @@ "Author": "Daniel D. Sjoberg [aut, cre] (ORCID: ), Becca Krouse [aut], Emily de la Rua [aut] (ORCID: ), Malan Bosman [aut] (ORCID: ), F. Hoffmann-La Roche AG [cph, fnd], GlaxoSmithKline Research & Development Limited [cph]", "Maintainer": "Daniel D. Sjoberg ", "RemoteType": "github", - "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "cards", "RemoteRef": "main", - "RemoteSha": "a7e651bb27e863dc0e589af67fb9cd3d81e8919f" + "RemoteSha": "a7c447f9e8d0f44375ec4d5f8af03ba31d7147a1", + "RemoteHost": "api.github.com" }, "cardx": { "Package": "cardx", @@ -1730,6 +1750,7 @@ "Author": "Daniel D. Sjoberg [aut, cre] (ORCID: ), Abinaya Yogasekaram [aut], Emily de la Rua [aut], Malcolm Barrett [ctb] (ORCID: ), F. Hoffmann-La Roche AG [cph, fnd]", "Maintainer": "Daniel D. Sjoberg ", "RemoteType": "github", + "Remotes": "insightsengineering/cards@main", "RemoteHost": "api.github.com", "RemoteUsername": "insightsengineering", "RemoteRepo": "cardx", @@ -1815,10 +1836,10 @@ }, "cli": { "Package": "cli", - "Version": "3.6.5", + "Version": "3.6.6", "Source": "Repository", "Title": "Helpers for Developing Command Line Interfaces", - "Authors@R": "c( person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"gabor@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Kirill\", \"M\u00fcller\", role = \"ctb\"), person(\"Salim\", \"Br\u00fcggemann\", , \"salim-b@pm.me\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"gabor@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Kirill\", \"Müller\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", , \"salim-b@pm.me\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "A suite of tools to build attractive command line interfaces ('CLIs'), from semantic elements: headings, lists, alerts, paragraphs, etc. Supports custom themes via a 'CSS'-like language. It also contains a number of lower level 'CLI' elements: rules, boxes, trees, and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI colors and text styles as well.", "License": "MIT + file LICENSE", "URL": "https://cli.r-lib.org, https://github.com/r-lib/cli", @@ -1853,11 +1874,12 @@ ], "Config/Needs/website": "r-lib/asciicast, bench, brio, cpp11, decor, desc, fansi, prettyunits, sessioninfo, tidyverse/tidytemplate, usethis, vctrs", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-25", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.2.9000", "NeedsCompilation": "yes", - "Author": "G\u00e1bor Cs\u00e1rdi [aut, cre], Hadley Wickham [ctb], Kirill M\u00fcller [ctb], Salim Br\u00fcggemann [ctb] (), Posit Software, PBC [cph, fnd]", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Gábor Csárdi [aut, cre], Hadley Wickham [ctb], Kirill Müller [ctb], Salim Brüggemann [ctb] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "clipr": { @@ -1980,7 +2002,7 @@ "NeedsCompilation": "yes", "Author": "Ross Ihaka [aut], Paul Murrell [aut] (ORCID: ), Kurt Hornik [aut] (ORCID: ), Jason C. Fisher [aut] (ORCID: ), Reto Stauffer [aut] (ORCID: ), Claus O. Wilke [aut] (ORCID: ), Claire D. McWhite [aut] (ORCID: ), Achim Zeileis [aut, cre] (ORCID: )", "Maintainer": "Achim Zeileis ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "commonmark": { "Package": "commonmark", @@ -2073,8 +2095,8 @@ }, "cowplot": { "Package": "cowplot", - "Version": "1.2.0.9000", - "Source": "GitHub", + "Version": "1.2.0", + "Source": "Repository", "Title": "Streamlined Plot Theme and Plot Annotations for 'ggplot2'", "Authors@R": "person( given = \"Claus O.\", family = \"Wilke\", role = c(\"aut\", \"cre\"), email = \"wilke@austin.utexas.edu\", comment = c(ORCID = \"0000-0002-7470-9261\") )", "Description": "Provides various features that help with creating publication-quality figures with 'ggplot2', such as a set of themes, functions to align plots and arrange them into complex compound figures, and functions that make it easy to annotate plots and or mix plots with images. The package was originally written for internal use in the Wilke lab, hence the name (Claus O. Wilke's plot package). It has also been used extensively in the book Fundamentals of Data Visualization.", @@ -2115,25 +2137,19 @@ "VignetteBuilder": "knitr", "Collate": "'add_sub.R' 'align_plots.R' 'as_grob.R' 'as_gtable.R' 'axis_canvas.R' 'cowplot.R' 'draw.R' 'get_plot_component.R' 'get_axes.R' 'get_titles.R' 'get_legend.R' 'get_panel.R' 'gtable.R' 'key_glyph.R' 'plot_grid.R' 'save.R' 'set_null_device.R' 'setup.R' 'stamp.R' 'themes.R' 'utils_ggplot2.R'", "RoxygenNote": "7.3.2", - "Roxygen": "list(markdown = TRUE)", "Encoding": "UTF-8", - "RemoteType": "github", - "RemoteHost": "api.github.com", - "RemoteRepo": "cowplot", - "RemoteUsername": "wilkelab", - "RemoteRef": "HEAD", - "RemoteSha": "b18d820d3af26b749235c4e4bc18bf416fba88e1", "NeedsCompilation": "no", "Author": "Claus O. Wilke [aut, cre] (ORCID: )", - "Maintainer": "Claus O. Wilke " + "Maintainer": "Claus O. Wilke ", + "Repository": "CRAN" }, "cpp11": { "Package": "cpp11", "Version": "0.5.4", "Source": "Repository", "Title": "A C++11 Interface for R's C Interface", + "Authors@R": "c( person(\"Davis\", \"Vaughan\", email = \"davis@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Jim\",\"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Romain\", \"François\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Benjamin\", \"Kietzman\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Provides a header only, C++11 interface to R's C interface. Compared to other approaches 'cpp11' strives to be safe against long jumps from the C API as well as C++ exceptions, conform to normal R function semantics and supports interaction with 'ALTREP' vectors.", - "Authors@R": "c( person(\"Davis\", \"Vaughan\", email = \"davis@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Jim\",\"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Romain\", \"Fran\u00e7ois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Benjamin\", \"Kietzman\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "License": "MIT + file LICENSE", "URL": "https://cpp11.r-lib.org, https://github.com/r-lib/cpp11", "BugReports": "https://github.com/r-lib/cpp11/issues", @@ -2164,23 +2180,22 @@ "withr" ], "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Config/Needs/cpp11/cpp_register": "brio, cli, decor, desc, glue, tibble, vctrs", "Encoding": "UTF-8", - "Roxygen": "list(markdown = TRUE)", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Davis Vaughan [aut, cre] (ORCID: ), Jim Hester [aut] (ORCID: ), Romain Fran\u00e7ois [aut] (ORCID: ), Benjamin Kietzman [ctb], Posit Software, PBC [cph, fnd]", + "Author": "Davis Vaughan [aut, cre] (ORCID: ), Jim Hester [aut] (ORCID: ), Romain François [aut] (ORCID: ), Benjamin Kietzman [ctb], Posit Software, PBC [cph, fnd]", "Maintainer": "Davis Vaughan ", - "Repository": "CRAN", - "Date": "2026-04-04" + "Repository": "CRAN" }, "crayon": { "Package": "crayon", "Version": "1.5.3", "Source": "Repository", "Title": "Colored Terminal Output", - "Authors@R": "c( person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Brodie\", \"Gaslam\", , \"brodie.gaslam@yahoo.com\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Brodie\", \"Gaslam\", , \"brodie.gaslam@yahoo.com\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "The crayon package is now superseded. Please use the 'cli' package for new projects. Colored terminal output on terminals that support 'ANSI' color and highlight codes. It also works in 'Emacs' 'ESS'. 'ANSI' color support is automatically detected. Colors and highlighting can be combined and nested. New styles can also be created easily. This package was inspired by the 'chalk' 'JavaScript' project.", "License": "MIT + file LICENSE", "URL": "https://r-lib.github.io/crayon/, https://github.com/r-lib/crayon", @@ -2201,8 +2216,8 @@ "RoxygenNote": "7.3.1", "Collate": "'aaa-rstudio-detect.R' 'aaaa-rematch2.R' 'aab-num-ansi-colors.R' 'aac-num-ansi-colors.R' 'ansi-256.R' 'ansi-palette.R' 'combine.R' 'string.R' 'utils.R' 'crayon-package.R' 'disposable.R' 'enc-utils.R' 'has_ansi.R' 'has_color.R' 'link.R' 'styles.R' 'machinery.R' 'parts.R' 'print.R' 'style-var.R' 'show.R' 'string_operations.R'", "NeedsCompilation": "no", - "Author": "G\u00e1bor Cs\u00e1rdi [aut, cre], Brodie Gaslam [ctb], Posit Software, PBC [cph, fnd]", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Gábor Csárdi [aut, cre], Brodie Gaslam [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "credentials": { @@ -2272,7 +2287,7 @@ }, "curl": { "Package": "curl", - "Version": "7.0.0", + "Version": "7.1.0", "Source": "Repository", "Type": "Package", "Title": "A Modern and Flexible Web Client for R", @@ -2372,11 +2387,11 @@ ], "RoxygenNote": "7.2.1", "NeedsCompilation": "no", - "Repository": "https://packagemanager.posit.co/cran/__linux__/noble/latest" + "Repository": "CRAN" }, "data.table": { "Package": "data.table", - "Version": "1.18.0", + "Version": "1.18.2.1", "Source": "Repository", "Title": "Extension of `data.frame`", "Depends": [ @@ -2402,19 +2417,19 @@ "VignetteBuilder": "knitr", "Encoding": "UTF-8", "ByteCompile": "TRUE", - "Authors@R": "c( person(\"Tyson\",\"Barrett\", role=c(\"aut\",\"cre\"), email=\"t.barrett88@gmail.com\", comment = c(ORCID=\"0000-0002-2137-1391\")), person(\"Matt\",\"Dowle\", role=\"aut\", email=\"mattjdowle@gmail.com\"), person(\"Arun\",\"Srinivasan\", role=\"aut\", email=\"asrini@pm.me\"), person(\"Jan\",\"Gorecki\", role=\"aut\", email=\"j.gorecki@wit.edu.pl\"), person(\"Michael\",\"Chirico\", role=\"aut\", email=\"michaelchirico4@gmail.com\", comment = c(ORCID=\"0000-0003-0787-087X\")), person(\"Toby\",\"Hocking\", role=\"aut\", email=\"toby.hocking@r-project.org\", comment = c(ORCID=\"0000-0002-3146-0865\")), person(\"Benjamin\",\"Schwendinger\",role=\"aut\", comment = c(ORCID=\"0000-0003-3315-8114\")), person(\"Ivan\", \"Krylov\", role=\"aut\", email=\"ikrylov@disroot.org\", comment = c(ORCID=\"0000-0002-0172-3812\")), person(\"Pasha\",\"Stetsenko\", role=\"ctb\"), person(\"Tom\",\"Short\", role=\"ctb\"), person(\"Steve\",\"Lianoglou\", role=\"ctb\"), person(\"Eduard\",\"Antonyan\", role=\"ctb\"), person(\"Markus\",\"Bonsch\", role=\"ctb\"), person(\"Hugh\",\"Parsonage\", role=\"ctb\"), person(\"Scott\",\"Ritchie\", role=\"ctb\"), person(\"Kun\",\"Ren\", role=\"ctb\"), person(\"Xianying\",\"Tan\", role=\"ctb\"), person(\"Rick\",\"Saporta\", role=\"ctb\"), person(\"Otto\",\"Seiskari\", role=\"ctb\"), person(\"Xianghui\",\"Dong\", role=\"ctb\"), person(\"Michel\",\"Lang\", role=\"ctb\"), person(\"Watal\",\"Iwasaki\", role=\"ctb\"), person(\"Seth\",\"Wenchel\", role=\"ctb\"), person(\"Karl\",\"Broman\", role=\"ctb\"), person(\"Tobias\",\"Schmidt\", role=\"ctb\"), person(\"David\",\"Arenburg\", role=\"ctb\"), person(\"Ethan\",\"Smith\", role=\"ctb\"), person(\"Francois\",\"Cocquemas\", role=\"ctb\"), person(\"Matthieu\",\"Gomez\", role=\"ctb\"), person(\"Philippe\",\"Chataignon\", role=\"ctb\"), person(\"Nello\",\"Blaser\", role=\"ctb\"), person(\"Dmitry\",\"Selivanov\", role=\"ctb\"), person(\"Andrey\",\"Riabushenko\", role=\"ctb\"), person(\"Cheng\",\"Lee\", role=\"ctb\"), person(\"Declan\",\"Groves\", role=\"ctb\"), person(\"Daniel\",\"Possenriede\", role=\"ctb\"), person(\"Felipe\",\"Parages\", role=\"ctb\"), person(\"Denes\",\"Toth\", role=\"ctb\"), person(\"Mus\",\"Yaramaz-David\", role=\"ctb\"), person(\"Ayappan\",\"Perumal\", role=\"ctb\"), person(\"James\",\"Sams\", role=\"ctb\"), person(\"Martin\",\"Morgan\", role=\"ctb\"), person(\"Michael\",\"Quinn\", role=\"ctb\"), person(given=\"@javrucebo\", role=\"ctb\", comment=\"GitHub user\"), person(\"Marc\",\"Halperin\", role=\"ctb\"), person(\"Roy\",\"Storey\", role=\"ctb\"), person(\"Manish\",\"Saraswat\", role=\"ctb\"), person(\"Morgan\",\"Jacob\", role=\"ctb\"), person(\"Michael\",\"Schubmehl\", role=\"ctb\"), person(\"Davis\",\"Vaughan\", role=\"ctb\"), person(\"Leonardo\",\"Silvestri\", role=\"ctb\"), person(\"Jim\",\"Hester\", role=\"ctb\"), person(\"Anthony\",\"Damico\", role=\"ctb\"), person(\"Sebastian\",\"Freundt\", role=\"ctb\"), person(\"David\",\"Simons\", role=\"ctb\"), person(\"Elliott\",\"Sales de Andrade\", role=\"ctb\"), person(\"Cole\",\"Miller\", role=\"ctb\"), person(\"Jens Peder\",\"Meldgaard\", role=\"ctb\"), person(\"Vaclav\",\"Tlapak\", role=\"ctb\"), person(\"Kevin\",\"Ushey\", role=\"ctb\"), person(\"Dirk\",\"Eddelbuettel\", role=\"ctb\"), person(\"Tony\",\"Fischetti\", role=\"ctb\"), person(\"Ofek\",\"Shilon\", role=\"ctb\"), person(\"Vadim\",\"Khotilovich\", role=\"ctb\"), person(\"Hadley\",\"Wickham\", role=\"ctb\"), person(\"Bennet\",\"Becker\", role=\"ctb\"), person(\"Kyle\",\"Haynes\", role=\"ctb\"), person(\"Boniface Christian\",\"Kamgang\", role=\"ctb\"), person(\"Olivier\",\"Delmarcell\", role=\"ctb\"), person(\"Josh\",\"O'Brien\", role=\"ctb\"), person(\"Dereck\",\"de Mezquita\", role=\"ctb\"), person(\"Michael\",\"Czekanski\", role=\"ctb\"), person(\"Dmitry\", \"Shemetov\", role=\"ctb\"), person(\"Nitish\", \"Jha\", role=\"ctb\"), person(\"Joshua\", \"Wu\", role=\"ctb\"), person(\"Iago\", \"Gin\u00e9-V\u00e1zquez\", role=\"ctb\"), person(\"Anirban\", \"Chetia\", role=\"ctb\"), person(\"Doris\", \"Amoakohene\", role=\"ctb\"), person(\"Angel\", \"Feliz\", role=\"ctb\"), person(\"Michael\",\"Young\", role=\"ctb\"), person(\"Mark\", \"Seeto\", role=\"ctb\"), person(\"Philippe\", \"Grosjean\", role=\"ctb\"), person(\"Vincent\", \"Runge\", role=\"ctb\"), person(\"Christian\", \"Wia\", role=\"ctb\"), person(\"Elise\", \"Maign\u00e9\", role=\"ctb\"), person(\"Vincent\", \"Rocher\", role=\"ctb\"), person(\"Vijay\", \"Lulla\", role=\"ctb\"), person(\"Alja\u017e\", \"Sluga\", role=\"ctb\"), person(\"Bill\", \"Evans\", role=\"ctb\"), person(\"Reino\", \"Bruner\", role=\"ctb\"), person(given=\"@badasahog\", role=\"ctb\", comment=\"GitHub user\"), person(\"Vinit\", \"Thakur\", role=\"ctb\"), person(\"Mukul\", \"Kumar\", role=\"ctb\"), person(\"Ildik\u00f3\", \"Czeller\", role=\"ctb\") )", + "Authors@R": "c( person(\"Tyson\",\"Barrett\", role=c(\"aut\",\"cre\"), email=\"t.barrett88@gmail.com\", comment = c(ORCID=\"0000-0002-2137-1391\")), person(\"Matt\",\"Dowle\", role=\"aut\", email=\"mattjdowle@gmail.com\"), person(\"Arun\",\"Srinivasan\", role=\"aut\", email=\"asrini@pm.me\"), person(\"Jan\",\"Gorecki\", role=\"aut\", email=\"j.gorecki@wit.edu.pl\"), person(\"Michael\",\"Chirico\", role=\"aut\", email=\"michaelchirico4@gmail.com\", comment = c(ORCID=\"0000-0003-0787-087X\")), person(\"Toby\",\"Hocking\", role=\"aut\", email=\"toby.hocking@r-project.org\", comment = c(ORCID=\"0000-0002-3146-0865\")), person(\"Benjamin\",\"Schwendinger\",role=\"aut\", comment = c(ORCID=\"0000-0003-3315-8114\")), person(\"Ivan\", \"Krylov\", role=\"aut\", email=\"ikrylov@disroot.org\", comment = c(ORCID=\"0000-0002-0172-3812\")), person(\"Pasha\",\"Stetsenko\", role=\"ctb\"), person(\"Tom\",\"Short\", role=\"ctb\"), person(\"Steve\",\"Lianoglou\", role=\"ctb\"), person(\"Eduard\",\"Antonyan\", role=\"ctb\"), person(\"Markus\",\"Bonsch\", role=\"ctb\"), person(\"Hugh\",\"Parsonage\", role=\"ctb\"), person(\"Scott\",\"Ritchie\", role=\"ctb\"), person(\"Kun\",\"Ren\", role=\"ctb\"), person(\"Xianying\",\"Tan\", role=\"ctb\"), person(\"Rick\",\"Saporta\", role=\"ctb\"), person(\"Otto\",\"Seiskari\", role=\"ctb\"), person(\"Xianghui\",\"Dong\", role=\"ctb\"), person(\"Michel\",\"Lang\", role=\"ctb\"), person(\"Watal\",\"Iwasaki\", role=\"ctb\"), person(\"Seth\",\"Wenchel\", role=\"ctb\"), person(\"Karl\",\"Broman\", role=\"ctb\"), person(\"Tobias\",\"Schmidt\", role=\"ctb\"), person(\"David\",\"Arenburg\", role=\"ctb\"), person(\"Ethan\",\"Smith\", role=\"ctb\"), person(\"Francois\",\"Cocquemas\", role=\"ctb\"), person(\"Matthieu\",\"Gomez\", role=\"ctb\"), person(\"Philippe\",\"Chataignon\", role=\"ctb\"), person(\"Nello\",\"Blaser\", role=\"ctb\"), person(\"Dmitry\",\"Selivanov\", role=\"ctb\"), person(\"Andrey\",\"Riabushenko\", role=\"ctb\"), person(\"Cheng\",\"Lee\", role=\"ctb\"), person(\"Declan\",\"Groves\", role=\"ctb\"), person(\"Daniel\",\"Possenriede\", role=\"ctb\"), person(\"Felipe\",\"Parages\", role=\"ctb\"), person(\"Denes\",\"Toth\", role=\"ctb\"), person(\"Mus\",\"Yaramaz-David\", role=\"ctb\"), person(\"Ayappan\",\"Perumal\", role=\"ctb\"), person(\"James\",\"Sams\", role=\"ctb\"), person(\"Martin\",\"Morgan\", role=\"ctb\"), person(\"Michael\",\"Quinn\", role=\"ctb\"), person(given=\"@javrucebo\", role=\"ctb\", comment=\"GitHub user\"), person(\"Marc\",\"Halperin\", role=\"ctb\"), person(\"Roy\",\"Storey\", role=\"ctb\"), person(\"Manish\",\"Saraswat\", role=\"ctb\"), person(\"Morgan\",\"Jacob\", role=\"ctb\"), person(\"Michael\",\"Schubmehl\", role=\"ctb\"), person(\"Davis\",\"Vaughan\", role=\"ctb\"), person(\"Leonardo\",\"Silvestri\", role=\"ctb\"), person(\"Jim\",\"Hester\", role=\"ctb\"), person(\"Anthony\",\"Damico\", role=\"ctb\"), person(\"Sebastian\",\"Freundt\", role=\"ctb\"), person(\"David\",\"Simons\", role=\"ctb\"), person(\"Elliott\",\"Sales de Andrade\", role=\"ctb\"), person(\"Cole\",\"Miller\", role=\"ctb\"), person(\"Jens Peder\",\"Meldgaard\", role=\"ctb\"), person(\"Vaclav\",\"Tlapak\", role=\"ctb\"), person(\"Kevin\",\"Ushey\", role=\"ctb\"), person(\"Dirk\",\"Eddelbuettel\", role=\"ctb\"), person(\"Tony\",\"Fischetti\", role=\"ctb\"), person(\"Ofek\",\"Shilon\", role=\"ctb\"), person(\"Vadim\",\"Khotilovich\", role=\"ctb\"), person(\"Hadley\",\"Wickham\", role=\"ctb\"), person(\"Bennet\",\"Becker\", role=\"ctb\"), person(\"Kyle\",\"Haynes\", role=\"ctb\"), person(\"Boniface Christian\",\"Kamgang\", role=\"ctb\"), person(\"Olivier\",\"Delmarcell\", role=\"ctb\"), person(\"Josh\",\"O'Brien\", role=\"ctb\"), person(\"Dereck\",\"de Mezquita\", role=\"ctb\"), person(\"Michael\",\"Czekanski\", role=\"ctb\"), person(\"Dmitry\", \"Shemetov\", role=\"ctb\"), person(\"Nitish\", \"Jha\", role=\"ctb\"), person(\"Joshua\", \"Wu\", role=\"ctb\"), person(\"Iago\", \"Giné-Vázquez\", role=\"ctb\"), person(\"Anirban\", \"Chetia\", role=\"ctb\"), person(\"Doris\", \"Amoakohene\", role=\"ctb\"), person(\"Angel\", \"Feliz\", role=\"ctb\"), person(\"Michael\",\"Young\", role=\"ctb\"), person(\"Mark\", \"Seeto\", role=\"ctb\"), person(\"Philippe\", \"Grosjean\", role=\"ctb\"), person(\"Vincent\", \"Runge\", role=\"ctb\"), person(\"Christian\", \"Wia\", role=\"ctb\"), person(\"Elise\", \"Maigné\", role=\"ctb\"), person(\"Vincent\", \"Rocher\", role=\"ctb\"), person(\"Vijay\", \"Lulla\", role=\"ctb\"), person(\"Aljaž\", \"Sluga\", role=\"ctb\"), person(\"Bill\", \"Evans\", role=\"ctb\"), person(\"Reino\", \"Bruner\", role=\"ctb\"), person(given=\"@badasahog\", role=\"ctb\", comment=\"GitHub user\"), person(\"Vinit\", \"Thakur\", role=\"ctb\"), person(\"Mukul\", \"Kumar\", role=\"ctb\"), person(\"Ildikó\", \"Czeller\", role=\"ctb\"), person(\"Manmita\", \"Das\", role=\"ctb\") )", "NeedsCompilation": "yes", - "Author": "Tyson Barrett [aut, cre] (ORCID: ), Matt Dowle [aut], Arun Srinivasan [aut], Jan Gorecki [aut], Michael Chirico [aut] (ORCID: ), Toby Hocking [aut] (ORCID: ), Benjamin Schwendinger [aut] (ORCID: ), Ivan Krylov [aut] (ORCID: ), Pasha Stetsenko [ctb], Tom Short [ctb], Steve Lianoglou [ctb], Eduard Antonyan [ctb], Markus Bonsch [ctb], Hugh Parsonage [ctb], Scott Ritchie [ctb], Kun Ren [ctb], Xianying Tan [ctb], Rick Saporta [ctb], Otto Seiskari [ctb], Xianghui Dong [ctb], Michel Lang [ctb], Watal Iwasaki [ctb], Seth Wenchel [ctb], Karl Broman [ctb], Tobias Schmidt [ctb], David Arenburg [ctb], Ethan Smith [ctb], Francois Cocquemas [ctb], Matthieu Gomez [ctb], Philippe Chataignon [ctb], Nello Blaser [ctb], Dmitry Selivanov [ctb], Andrey Riabushenko [ctb], Cheng Lee [ctb], Declan Groves [ctb], Daniel Possenriede [ctb], Felipe Parages [ctb], Denes Toth [ctb], Mus Yaramaz-David [ctb], Ayappan Perumal [ctb], James Sams [ctb], Martin Morgan [ctb], Michael Quinn [ctb], @javrucebo [ctb] (GitHub user), Marc Halperin [ctb], Roy Storey [ctb], Manish Saraswat [ctb], Morgan Jacob [ctb], Michael Schubmehl [ctb], Davis Vaughan [ctb], Leonardo Silvestri [ctb], Jim Hester [ctb], Anthony Damico [ctb], Sebastian Freundt [ctb], David Simons [ctb], Elliott Sales de Andrade [ctb], Cole Miller [ctb], Jens Peder Meldgaard [ctb], Vaclav Tlapak [ctb], Kevin Ushey [ctb], Dirk Eddelbuettel [ctb], Tony Fischetti [ctb], Ofek Shilon [ctb], Vadim Khotilovich [ctb], Hadley Wickham [ctb], Bennet Becker [ctb], Kyle Haynes [ctb], Boniface Christian Kamgang [ctb], Olivier Delmarcell [ctb], Josh O'Brien [ctb], Dereck de Mezquita [ctb], Michael Czekanski [ctb], Dmitry Shemetov [ctb], Nitish Jha [ctb], Joshua Wu [ctb], Iago Gin\u00e9-V\u00e1zquez [ctb], Anirban Chetia [ctb], Doris Amoakohene [ctb], Angel Feliz [ctb], Michael Young [ctb], Mark Seeto [ctb], Philippe Grosjean [ctb], Vincent Runge [ctb], Christian Wia [ctb], Elise Maign\u00e9 [ctb], Vincent Rocher [ctb], Vijay Lulla [ctb], Alja\u017e Sluga [ctb], Bill Evans [ctb], Reino Bruner [ctb], @badasahog [ctb] (GitHub user), Vinit Thakur [ctb], Mukul Kumar [ctb], Ildik\u00f3 Czeller [ctb]", + "Author": "Tyson Barrett [aut, cre] (ORCID: ), Matt Dowle [aut], Arun Srinivasan [aut], Jan Gorecki [aut], Michael Chirico [aut] (ORCID: ), Toby Hocking [aut] (ORCID: ), Benjamin Schwendinger [aut] (ORCID: ), Ivan Krylov [aut] (ORCID: ), Pasha Stetsenko [ctb], Tom Short [ctb], Steve Lianoglou [ctb], Eduard Antonyan [ctb], Markus Bonsch [ctb], Hugh Parsonage [ctb], Scott Ritchie [ctb], Kun Ren [ctb], Xianying Tan [ctb], Rick Saporta [ctb], Otto Seiskari [ctb], Xianghui Dong [ctb], Michel Lang [ctb], Watal Iwasaki [ctb], Seth Wenchel [ctb], Karl Broman [ctb], Tobias Schmidt [ctb], David Arenburg [ctb], Ethan Smith [ctb], Francois Cocquemas [ctb], Matthieu Gomez [ctb], Philippe Chataignon [ctb], Nello Blaser [ctb], Dmitry Selivanov [ctb], Andrey Riabushenko [ctb], Cheng Lee [ctb], Declan Groves [ctb], Daniel Possenriede [ctb], Felipe Parages [ctb], Denes Toth [ctb], Mus Yaramaz-David [ctb], Ayappan Perumal [ctb], James Sams [ctb], Martin Morgan [ctb], Michael Quinn [ctb], @javrucebo [ctb] (GitHub user), Marc Halperin [ctb], Roy Storey [ctb], Manish Saraswat [ctb], Morgan Jacob [ctb], Michael Schubmehl [ctb], Davis Vaughan [ctb], Leonardo Silvestri [ctb], Jim Hester [ctb], Anthony Damico [ctb], Sebastian Freundt [ctb], David Simons [ctb], Elliott Sales de Andrade [ctb], Cole Miller [ctb], Jens Peder Meldgaard [ctb], Vaclav Tlapak [ctb], Kevin Ushey [ctb], Dirk Eddelbuettel [ctb], Tony Fischetti [ctb], Ofek Shilon [ctb], Vadim Khotilovich [ctb], Hadley Wickham [ctb], Bennet Becker [ctb], Kyle Haynes [ctb], Boniface Christian Kamgang [ctb], Olivier Delmarcell [ctb], Josh O'Brien [ctb], Dereck de Mezquita [ctb], Michael Czekanski [ctb], Dmitry Shemetov [ctb], Nitish Jha [ctb], Joshua Wu [ctb], Iago Giné-Vázquez [ctb], Anirban Chetia [ctb], Doris Amoakohene [ctb], Angel Feliz [ctb], Michael Young [ctb], Mark Seeto [ctb], Philippe Grosjean [ctb], Vincent Runge [ctb], Christian Wia [ctb], Elise Maigné [ctb], Vincent Rocher [ctb], Vijay Lulla [ctb], Aljaž Sluga [ctb], Bill Evans [ctb], Reino Bruner [ctb], @badasahog [ctb] (GitHub user), Vinit Thakur [ctb], Mukul Kumar [ctb], Ildikó Czeller [ctb], Manmita Das [ctb]", "Maintainer": "Tyson Barrett ", "Repository": "CRAN" }, "datawizard": { "Package": "datawizard", - "Version": "1.3.0", - "Source": "Repository", + "Version": "1.3.1", + "Source": "GitHub", "Type": "Package", "Title": "Easy Data Wrangling and Statistical Transformations", - "Authors@R": "c( person(\"Indrajeet\", \"Patil\", , \"patilindrajeet.science@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(\"Etienne\", \"Bacher\", , \"etienne.bacher@protonmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-9271-5075\")), person(\"Dominique\", \"Makowski\", , \"dom.makowski@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-5375-9967\")), person(\"Daniel\", \"L\u00fcdecke\", , \"d.luedecke@uke.de\", role = \"aut\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(\"Mattan S.\", \"Ben-Shachar\", , \"matanshm@post.bgu.ac.il\", role = \"aut\", comment = c(ORCID = \"0000-0002-4287-4801\")), person(\"Brenton M.\", \"Wiernik\", , \"brenton@wiernik.org\", role = \"aut\", comment = c(ORCID = \"0000-0001-9560-6336\")), person(\"R\u00e9mi\", \"Th\u00e9riault\", , \"remi.theriault@mail.mcgill.ca\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4315-6788\")), person(\"Thomas J.\", \"Faulkenberry\", , \"faulkenberry@tarleton.edu\", role = \"rev\"), person(\"Robert\", \"Garrett\", , \"rcg4@illinois.edu\", role = \"rev\") )", + "Authors@R": "c( person(\"Indrajeet\", \"Patil\", , \"patilindrajeet.science@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(\"Etienne\", \"Bacher\", , \"etienne.bacher@protonmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-9271-5075\")), person(\"Dominique\", \"Makowski\", , \"dom.makowski@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-5375-9967\")), person(\"Daniel\", \"Lüdecke\", , \"d.luedecke@uke.de\", role = \"aut\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(\"Mattan S.\", \"Ben-Shachar\", , \"matanshm@post.bgu.ac.il\", role = \"aut\", comment = c(ORCID = \"0000-0002-4287-4801\")), person(\"Brenton M.\", \"Wiernik\", , \"brenton@wiernik.org\", role = \"aut\", comment = c(ORCID = \"0000-0001-9560-6336\")), person(\"Rémi\", \"Thériault\", , \"remi.theriault@mail.mcgill.ca\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4315-6788\")), person(\"Thomas J.\", \"Faulkenberry\", , \"faulkenberry@tarleton.edu\", role = \"rev\"), person(\"Robert\", \"Garrett\", , \"rcg4@illinois.edu\", role = \"rev\") )", "Maintainer": "Etienne Bacher ", "Description": "A lightweight package to assist in key steps involved in any data analysis workflow: (1) wrangling the raw data to get it in the needed form, (2) applying preprocessing steps and statistical transformations, and (3) compute statistical summaries of data properties and distributions. It is also the data wrangling backend for packages in 'easystats' ecosystem. References: Patil et al. (2022) .", "License": "MIT + file LICENSE", @@ -2424,7 +2439,7 @@ "R (>= 4.0)" ], "Imports": [ - "insight (>= 1.4.2)", + "insight (>= 1.4.6)", "stats", "utils" ], @@ -2438,6 +2453,7 @@ "dplyr (>= 1.1)", "effectsize", "emmeans", + "fixest", "gamm4", "ggplot2 (>= 3.5.0)", "gt", @@ -2448,6 +2464,7 @@ "mediation", "modelbased", "nanoparquet", + "openssl", "parameters (>= 0.21.7)", "performance (>= 0.14.0)", "poorman (>= 0.2.7)", @@ -2467,17 +2484,23 @@ "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Language": "en-US", + "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/Needs/website": "easystats/easystatstemplate", + "RemoteType": "github", + "RemoteHost": "api.github.com", + "RemoteRepo": "datawizard", + "RemoteUsername": "easystats", + "RemoteRef": "HEAD", + "RemoteSha": "89daeba7d094cb88d08997c2c232ba3a37243195", "NeedsCompilation": "no", - "Author": "Indrajeet Patil [aut] (ORCID: ), Etienne Bacher [aut, cre] (ORCID: ), Dominique Makowski [aut] (ORCID: ), Daniel L\u00fcdecke [aut] (ORCID: ), Mattan S. Ben-Shachar [aut] (ORCID: ), Brenton M. Wiernik [aut] (ORCID: ), R\u00e9mi Th\u00e9riault [ctb] (ORCID: ), Thomas J. Faulkenberry [rev], Robert Garrett [rev]", - "Repository": "CRAN" + "Author": "Indrajeet Patil [aut] (ORCID: ), Etienne Bacher [aut, cre] (ORCID: ), Dominique Makowski [aut] (ORCID: ), Daniel Lüdecke [aut] (ORCID: ), Mattan S. Ben-Shachar [aut] (ORCID: ), Brenton M. Wiernik [aut] (ORCID: ), Rémi Thériault [ctb] (ORCID: ), Thomas J. Faulkenberry [rev], Robert Garrett [rev]" }, "dbplyr": { "Package": "dbplyr", - "Version": "2.5.1", + "Version": "2.5.2", "Source": "Repository", "Type": "Package", "Title": "A 'dplyr' Back End for Databases", @@ -2541,8 +2564,8 @@ "Version": "1.4.3", "Source": "Repository", "Title": "Manipulate DESCRIPTION Files", - "Authors@R": "c( person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kirill\", \"M\u00fcller\", role = \"aut\"), person(\"Jim\", \"Hester\", , \"james.f.hester@gmail.com\", role = \"aut\"), person(\"Ma\u00eblle\", \"Salmon\", role = \"ctb\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kirill\", \"Müller\", role = \"aut\"), person(\"Jim\", \"Hester\", , \"james.f.hester@gmail.com\", role = \"aut\"), person(\"Maëlle\", \"Salmon\", role = \"ctb\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Maintainer": "Gábor Csárdi ", "Description": "Tools to read, write, create, and manipulate DESCRIPTION files. It is intended for packages that create or manipulate other packages.", "License": "MIT + file LICENSE", "URL": "https://desc.r-lib.org/, https://github.com/r-lib/desc", @@ -2571,12 +2594,12 @@ "RoxygenNote": "7.2.3", "Collate": "'assertions.R' 'authors-at-r.R' 'built.R' 'classes.R' 'collate.R' 'constants.R' 'deps.R' 'desc-package.R' 'description.R' 'encoding.R' 'find-package-root.R' 'latex.R' 'non-oo-api.R' 'package-archives.R' 'read.R' 'remotes.R' 'str.R' 'syntax_checks.R' 'urls.R' 'utils.R' 'validate.R' 'version.R'", "NeedsCompilation": "no", - "Author": "G\u00e1bor Cs\u00e1rdi [aut, cre], Kirill M\u00fcller [aut], Jim Hester [aut], Ma\u00eblle Salmon [ctb] (), Posit Software, PBC [cph, fnd]", + "Author": "Gábor Csárdi [aut, cre], Kirill Müller [aut], Jim Hester [aut], Maëlle Salmon [ctb] (), Posit Software, PBC [cph, fnd]", "Repository": "CRAN" }, "devtools": { "Package": "devtools", - "Version": "2.4.6", + "Version": "2.5.1", "Source": "Repository", "Title": "Tools to Make Developing R Packages Easier", "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", @@ -2589,28 +2612,25 @@ "usethis (>= 3.2.1)" ], "Imports": [ - "cli (>= 3.6.5)", + "cli (>= 3.6.6)", "desc (>= 1.4.3)", - "ellipsis (>= 0.3.2)", - "fs (>= 1.6.6)", - "lifecycle (>= 1.0.4)", + "ellipsis (>= 0.3.3)", + "fs (>= 2.0.1)", + "lifecycle (>= 1.0.5)", "memoise (>= 2.0.1)", "miniUI (>= 0.1.2)", + "pak (>= 0.9.3)", "pkgbuild (>= 1.4.8)", - "pkgdown (>= 2.1.3)", - "pkgload (>= 1.4.1)", + "pkgdown (>= 2.2.0)", + "pkgload (>= 1.5.1)", "profvis (>= 0.4.0)", "rcmdcheck (>= 1.4.0)", - "remotes (>= 2.5.0)", - "rlang (>= 1.1.6)", + "rlang (>= 1.2.0)", "roxygen2 (>= 7.3.3)", - "rversions (>= 2.1.2)", + "rversions (>= 3.0.0)", "sessioninfo (>= 1.2.3)", - "stats", - "testthat (>= 3.2.3)", - "tools", + "testthat (>= 3.3.2)", "urlchecker (>= 1.0.1)", - "utils", "withr (>= 3.0.2)" ], "Suggests": [ @@ -2622,21 +2642,20 @@ "DT (>= 0.23)", "foghorn (>= 1.4.2)", "gh (>= 1.3.0)", - "gmailr (>= 1.0.1)", - "httr (>= 1.4.3)", + "httr2 (>= 1.0.0)", "knitr (>= 1.39)", "lintr (>= 3.0.0)", - "MASS", - "mockery (>= 0.4.3)", - "pingr (>= 2.0.1)", - "rhub (>= 1.1.1)", + "quarto (>= 1.5.1)", + "remotes (>= 2.5.0)", "rmarkdown (>= 2.14)", "rstudioapi (>= 0.13)", - "spelling (>= 2.2)" + "spelling (>= 2.2)", + "xml2" ], - "VignetteBuilder": "knitr", + "VignetteBuilder": "knitr, quarto", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", "Encoding": "UTF-8", "Language": "en-US", "RoxygenNote": "7.3.3", @@ -2683,7 +2702,7 @@ "Package": "digest", "Version": "0.6.39", "Source": "Repository", - "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Antoine\", \"Lucas\", role=\"ctb\", comment = c(ORCID = \"0000-0002-8059-9767\")), person(\"Jarek\", \"Tuszynski\", role=\"ctb\"), person(\"Henrik\", \"Bengtsson\", role=\"ctb\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Simon\", \"Urbanek\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2297-1732\")), person(\"Mario\", \"Frasca\", role=\"ctb\"), person(\"Bryan\", \"Lewis\", role=\"ctb\"), person(\"Murray\", \"Stokely\", role=\"ctb\"), person(\"Hannes\", \"Muehleisen\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8552-0029\")), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Jim\", \"Hester\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Wush\", \"Wu\", role=\"ctb\", comment = c(ORCID = \"0000-0001-5180-0567\")), person(\"Qiang\", \"Kou\", role=\"ctb\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Thierry\", \"Onkelinx\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")), person(\"Michel\", \"Lang\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Viliam\", \"Simko\", role=\"ctb\"), person(\"Kurt\", \"Hornik\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Radford\", \"Neal\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2473-3407\")), person(\"Kendon\", \"Bell\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9093-8312\")), person(\"Matthew\", \"de Queljoe\", role=\"ctb\"), person(\"Dmitry\", \"Selivanov\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0492-6647\")), person(\"Ion\", \"Suruceanu\", role=\"ctb\", comment = c(ORCID = \"0009-0005-6446-4909\")), person(\"Bill\", \"Denney\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5759-428X\")), person(\"Dirk\", \"Schumacher\", role=\"ctb\"), person(\"Andr\u00e1s\", \"Svraka\", role=\"ctb\", comment = c(ORCID = \"0009-0008-8480-1329\")), person(\"Sergey\", \"Fedorov\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5970-7233\")), person(\"Will\", \"Landau\", role=\"ctb\", comment = c(ORCID = \"0000-0003-1878-3253\")), person(\"Floris\", \"Vanderhaeghe\", role=\"ctb\", comment = c(ORCID = \"0000-0002-6378-6229\")), person(\"Kevin\", \"Tappe\", role=\"ctb\"), person(\"Harris\", \"McGehee\", role=\"ctb\"), person(\"Tim\", \"Mastny\", role=\"ctb\"), person(\"Aaron\", \"Peikert\", role=\"ctb\", comment = c(ORCID = \"0000-0001-7813-818X\")), person(\"Mark\", \"van der Loo\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9807-4686\")), person(\"Chris\", \"Muir\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2555-3878\")), person(\"Moritz\", \"Beller\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4852-0526\")), person(\"Sebastian\", \"Campbell\", role=\"ctb\", comment = c(ORCID = \"0009-0000-5948-4503\")), person(\"Winston\", \"Chang\", role=\"ctb\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Dean\", \"Attali\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5645-3493\")), person(\"Michael\", \"Chirico\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Kevin\", \"Ushey\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Carl\", \"Pearson\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0701-7860\")))", + "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Antoine\", \"Lucas\", role=\"ctb\", comment = c(ORCID = \"0000-0002-8059-9767\")), person(\"Jarek\", \"Tuszynski\", role=\"ctb\"), person(\"Henrik\", \"Bengtsson\", role=\"ctb\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Simon\", \"Urbanek\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2297-1732\")), person(\"Mario\", \"Frasca\", role=\"ctb\"), person(\"Bryan\", \"Lewis\", role=\"ctb\"), person(\"Murray\", \"Stokely\", role=\"ctb\"), person(\"Hannes\", \"Muehleisen\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8552-0029\")), person(\"Duncan\", \"Murdoch\", role=\"ctb\"), person(\"Jim\", \"Hester\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Wush\", \"Wu\", role=\"ctb\", comment = c(ORCID = \"0000-0001-5180-0567\")), person(\"Qiang\", \"Kou\", role=\"ctb\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Thierry\", \"Onkelinx\", role=\"ctb\", comment = c(ORCID = \"0000-0001-8804-4216\")), person(\"Michel\", \"Lang\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Viliam\", \"Simko\", role=\"ctb\"), person(\"Kurt\", \"Hornik\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Radford\", \"Neal\", role=\"ctb\", comment = c(ORCID = \"0000-0002-2473-3407\")), person(\"Kendon\", \"Bell\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9093-8312\")), person(\"Matthew\", \"de Queljoe\", role=\"ctb\"), person(\"Dmitry\", \"Selivanov\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0492-6647\")), person(\"Ion\", \"Suruceanu\", role=\"ctb\", comment = c(ORCID = \"0009-0005-6446-4909\")), person(\"Bill\", \"Denney\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5759-428X\")), person(\"Dirk\", \"Schumacher\", role=\"ctb\"), person(\"András\", \"Svraka\", role=\"ctb\", comment = c(ORCID = \"0009-0008-8480-1329\")), person(\"Sergey\", \"Fedorov\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5970-7233\")), person(\"Will\", \"Landau\", role=\"ctb\", comment = c(ORCID = \"0000-0003-1878-3253\")), person(\"Floris\", \"Vanderhaeghe\", role=\"ctb\", comment = c(ORCID = \"0000-0002-6378-6229\")), person(\"Kevin\", \"Tappe\", role=\"ctb\"), person(\"Harris\", \"McGehee\", role=\"ctb\"), person(\"Tim\", \"Mastny\", role=\"ctb\"), person(\"Aaron\", \"Peikert\", role=\"ctb\", comment = c(ORCID = \"0000-0001-7813-818X\")), person(\"Mark\", \"van der Loo\", role=\"ctb\", comment = c(ORCID = \"0000-0002-9807-4686\")), person(\"Chris\", \"Muir\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2555-3878\")), person(\"Moritz\", \"Beller\", role=\"ctb\", comment = c(ORCID = \"0000-0003-4852-0526\")), person(\"Sebastian\", \"Campbell\", role=\"ctb\", comment = c(ORCID = \"0009-0000-5948-4503\")), person(\"Winston\", \"Chang\", role=\"ctb\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Dean\", \"Attali\", role=\"ctb\", comment = c(ORCID = \"0000-0002-5645-3493\")), person(\"Michael\", \"Chirico\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Kevin\", \"Ushey\", role=\"ctb\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Carl\", \"Pearson\", role=\"ctb\", comment = c(ORCID = \"0000-0003-0701-7860\")))", "Date": "2025-11-19", "Title": "Create Compact Hash Digests of R Objects", "Description": "Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as 'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.", @@ -2704,7 +2723,7 @@ "VignetteBuilder": "simplermarkdown", "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Antoine Lucas [ctb] (ORCID: ), Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] (ORCID: ), Simon Urbanek [ctb] (ORCID: ), Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb] (ORCID: ), Duncan Murdoch [ctb], Jim Hester [ctb] (ORCID: ), Wush Wu [ctb] (ORCID: ), Qiang Kou [ctb] (ORCID: ), Thierry Onkelinx [ctb] (ORCID: ), Michel Lang [ctb] (ORCID: ), Viliam Simko [ctb], Kurt Hornik [ctb] (ORCID: ), Radford Neal [ctb] (ORCID: ), Kendon Bell [ctb] (ORCID: ), Matthew de Queljoe [ctb], Dmitry Selivanov [ctb] (ORCID: ), Ion Suruceanu [ctb] (ORCID: ), Bill Denney [ctb] (ORCID: ), Dirk Schumacher [ctb], Andr\u00e1s Svraka [ctb] (ORCID: ), Sergey Fedorov [ctb] (ORCID: ), Will Landau [ctb] (ORCID: ), Floris Vanderhaeghe [ctb] (ORCID: ), Kevin Tappe [ctb], Harris McGehee [ctb], Tim Mastny [ctb], Aaron Peikert [ctb] (ORCID: ), Mark van der Loo [ctb] (ORCID: ), Chris Muir [ctb] (ORCID: ), Moritz Beller [ctb] (ORCID: ), Sebastian Campbell [ctb] (ORCID: ), Winston Chang [ctb] (ORCID: ), Dean Attali [ctb] (ORCID: ), Michael Chirico [ctb] (ORCID: ), Kevin Ushey [ctb] (ORCID: ), Carl Pearson [ctb] (ORCID: )", + "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Antoine Lucas [ctb] (ORCID: ), Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] (ORCID: ), Simon Urbanek [ctb] (ORCID: ), Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb] (ORCID: ), Duncan Murdoch [ctb], Jim Hester [ctb] (ORCID: ), Wush Wu [ctb] (ORCID: ), Qiang Kou [ctb] (ORCID: ), Thierry Onkelinx [ctb] (ORCID: ), Michel Lang [ctb] (ORCID: ), Viliam Simko [ctb], Kurt Hornik [ctb] (ORCID: ), Radford Neal [ctb] (ORCID: ), Kendon Bell [ctb] (ORCID: ), Matthew de Queljoe [ctb], Dmitry Selivanov [ctb] (ORCID: ), Ion Suruceanu [ctb] (ORCID: ), Bill Denney [ctb] (ORCID: ), Dirk Schumacher [ctb], András Svraka [ctb] (ORCID: ), Sergey Fedorov [ctb] (ORCID: ), Will Landau [ctb] (ORCID: ), Floris Vanderhaeghe [ctb] (ORCID: ), Kevin Tappe [ctb], Harris McGehee [ctb], Tim Mastny [ctb], Aaron Peikert [ctb] (ORCID: ), Mark van der Loo [ctb] (ORCID: ), Chris Muir [ctb] (ORCID: ), Moritz Beller [ctb] (ORCID: ), Sebastian Campbell [ctb] (ORCID: ), Winston Chang [ctb] (ORCID: ), Dean Attali [ctb] (ORCID: ), Michael Chirico [ctb] (ORCID: ), Kevin Ushey [ctb] (ORCID: ), Carl Pearson [ctb] (ORCID: )", "Maintainer": "Dirk Eddelbuettel ", "Repository": "CRAN" }, @@ -2713,7 +2732,7 @@ "Version": "4.7.1", "Source": "Repository", "Title": "Groupwise Statistics, LSmeans, Linear Estimates, Utilities", - "Authors@R": "c( person(given = \"Ulrich\", family = \"Halekoh\", email = \"uhalekoh@health.sdu.dk\", role = c(\"aut\", \"cph\")), person(given = \"S\u00f8ren\", family = \"H\u00f8jsgaard\", email = \"sorenh@math.aau.dk\", role = c(\"aut\", \"cre\", \"cph\")) )", + "Authors@R": "c( person(given = \"Ulrich\", family = \"Halekoh\", email = \"uhalekoh@health.sdu.dk\", role = c(\"aut\", \"cph\")), person(given = \"Søren\", family = \"Højsgaard\", email = \"sorenh@math.aau.dk\", role = c(\"aut\", \"cre\", \"cph\")) )", "Description": "Utility package containing: Main categories: Working with grouped data: 'do' something to data when stratified 'by' some variables. General linear estimates. Data handling utilities. Functional programming, in particular restrict functions to a smaller domain. Miscellaneous functions for data handling. Model stability in connection with model selection. Miscellaneous other tools.", "Encoding": "UTF-8", "VignetteBuilder": "knitr", @@ -2755,9 +2774,9 @@ ], "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Ulrich Halekoh [aut, cph], S\u00f8ren H\u00f8jsgaard [aut, cre, cph]", - "Maintainer": "S\u00f8ren H\u00f8jsgaard ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Author": "Ulrich Halekoh [aut, cph], Søren Højsgaard [aut, cre, cph]", + "Maintainer": "Søren Højsgaard ", + "Repository": "CRAN" }, "dobson": { "Package": "dobson", @@ -2822,7 +2841,7 @@ "NeedsCompilation": "no", "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "dplyr": { "Package": "dplyr", @@ -2830,13 +2849,13 @@ "Source": "Repository", "Type": "Package", "Title": "A Grammar of Data Manipulation", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Romain\", \"Fran\u00e7ois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Lionel\", \"Henry\", role = \"aut\"), person(\"Kirill\", \"M\u00fcller\", role = \"aut\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Romain\", \"François\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Lionel\", \"Henry\", role = \"aut\"), person(\"Kirill\", \"Müller\", role = \"aut\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "A fast, consistent tool for working with data frame like objects, both in memory and out of memory.", "License": "MIT + file LICENSE", "URL": "https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr", "BugReports": "https://github.com/tidyverse/dplyr/issues", "Depends": [ - "R (>= 3.5.0)" + "R (>= 4.1.0)" ], "Imports": [ "cli (>= 3.6.2)", @@ -2854,9 +2873,7 @@ "vctrs (>= 0.7.1)" ], "Suggests": [ - "bench", "broom", - "callr", "covr", "DBI", "dbplyr (>= 2.2.1)", @@ -2864,12 +2881,9 @@ "knitr", "Lahman", "lobstr", - "microbenchmark", "nycflights13", "purrr", "rmarkdown", - "RMySQL", - "RPostgreSQL", "RSQLite", "stringi (>= 1.7.6)", "testthat (>= 3.1.5)", @@ -2877,20 +2891,21 @@ "withr" ], "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse, shiny, pkgdown, tidyverse/tidytemplate", + "Config/build/compilation-database": "true", + "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Encoding": "UTF-8", "LazyData": "true", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut, cre] (), Romain Fran\u00e7ois [aut] (), Lionel Henry [aut], Kirill M\u00fcller [aut] (), Davis Vaughan [aut] (), Posit Software, PBC [cph, fnd]", + "Author": "Hadley Wickham [aut, cre] (ORCID: ), Romain François [aut] (ORCID: ), Lionel Henry [aut], Kirill Müller [aut] (ORCID: ), Davis Vaughan [aut] (ORCID: ), Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "dtplyr": { "Package": "dtplyr", - "Version": "1.3.2.9000", - "Source": "GitHub", + "Version": "1.3.3", + "Source": "Repository", "Title": "Data Table Back-End for 'dplyr'", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"cre\", \"aut\")), person(\"Maximilian\", \"Girlich\", role = \"aut\"), person(\"Mark\", \"Fairbanks\", role = \"aut\"), person(\"Ryan\", \"Dickerson\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Provides a data.table backend for 'dplyr'. The goal of 'dtplyr' is to allow you to write 'dplyr' code that is automatically translated to the equivalent, but usually much faster, data.table code.", @@ -2924,25 +2939,19 @@ "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Encoding": "UTF-8", - "Roxygen": "{library(tidyr); list(markdown = TRUE)}", - "RoxygenNote": "7.3.2.9000", - "RemoteType": "github", - "RemoteHost": "api.github.com", - "RemoteRepo": "dtplyr", - "RemoteUsername": "tidyverse", - "RemoteRef": "HEAD", - "RemoteSha": "6f205fa5dea507794b386e92f342eb179fa7d1ed", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "Hadley Wickham [cre, aut], Maximilian Girlich [aut], Mark Fairbanks [aut], Ryan Dickerson [aut], Posit Software, PBC [cph, fnd]", - "Maintainer": "Hadley Wickham " + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" }, "effectsize": { "Package": "effectsize", - "Version": "1.0.1", + "Version": "1.0.2", "Source": "Repository", "Type": "Package", "Title": "Indices of Effect Size", - "Authors@R": "c(person(given = \"Mattan S.\", family = \"Ben-Shachar\", role = c(\"aut\", \"cre\"), email = \"mattansb@msbstats.info\", comment = c(ORCID = \"0000-0002-4287-4801\")), person(given = \"Dominique\", family = \"Makowski\", role = \"aut\", email = \"dom.makowski@gmail.com\", comment = c(ORCID = \"0000-0001-5375-9967\")), person(given = \"Daniel\", family = \"L\u00fcdecke\", role = \"aut\", email = \"d.luedecke@uke.de\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(given = \"Indrajeet\", family = \"Patil\", role = \"aut\", email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(given = \"Brenton M.\", family = \"Wiernik\", role = \"aut\", email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\")), person(given = \"R\u00e9mi\", family = \"Th\u00e9riault\", role = \"aut\", email = \"remi.theriault@mail.mcgill.ca\", comment = c(ORCID = \"0000-0003-4315-6788\")), person(given = \"Ken\", family = \"Kelley\", role = \"ctb\"), person(given = \"David\", family = \"Stanley\", role = \"ctb\"), person(given = \"Aaron\", family = \"Caldwell\", role = \"ctb\", email = \"arcaldwell49@gmail.com\", comment = c(ORCID = \"0000-0002-4541-6283\")), person(given = \"Jessica\", family = \"Burnett\", role = \"rev\", email = \"jburnett@usgs.gov\", comment = c(ORCID = \"0000-0002-0896-5099\")), person(given = \"Johannes\", family = \"Karreth\", role = \"rev\", email = \"jkarreth@ursinus.edu\", comment = c(ORCID = \"0000-0003-4586-7153\")), person(given = \"Philip\", family = \"Waggoner\", role = c(\"aut\", \"ctb\"), email = \"philip.waggoner@gmail.com\", comment = c(ORCID = \"0000-0002-7825-7573\")))", + "Authors@R": "c(person(given = \"Mattan S.\", family = \"Ben-Shachar\", role = c(\"aut\", \"cre\"), email = \"mattansb@msbstats.info\", comment = c(ORCID = \"0000-0002-4287-4801\")), person(given = \"Dominique\", family = \"Makowski\", role = \"aut\", email = \"dom.makowski@gmail.com\", comment = c(ORCID = \"0000-0001-5375-9967\")), person(given = \"Daniel\", family = \"Lüdecke\", role = \"aut\", email = \"d.luedecke@uke.de\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(given = \"Indrajeet\", family = \"Patil\", role = \"aut\", email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(given = \"Brenton M.\", family = \"Wiernik\", role = \"aut\", email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\")), person(given = \"Rémi\", family = \"Thériault\", role = \"aut\", email = \"remi.theriault@mail.mcgill.ca\", comment = c(ORCID = \"0000-0003-4315-6788\")), person(given = \"Ken\", family = \"Kelley\", role = \"ctb\"), person(given = \"David\", family = \"Stanley\", role = \"ctb\"), person(given = \"Aaron\", family = \"Caldwell\", role = \"ctb\", email = \"arcaldwell49@gmail.com\", comment = c(ORCID = \"0000-0002-4541-6283\")), person(given = \"Jessica\", family = \"Burnett\", role = \"rev\", email = \"jburnett@usgs.gov\", comment = c(ORCID = \"0000-0002-0896-5099\")), person(given = \"Johannes\", family = \"Karreth\", role = \"rev\", email = \"jkarreth@ursinus.edu\", comment = c(ORCID = \"0000-0003-4586-7153\")), person(given = \"Philip\", family = \"Waggoner\", role = c(\"aut\", \"ctb\"), email = \"philip.waggoner@gmail.com\", comment = c(ORCID = \"0000-0002-7825-7573\")))", "Maintainer": "Mattan S. Ben-Shachar ", "Description": "Provide utilities to work with indices of effect size for a wide variety of models and hypothesis tests (see list of supported models using the function 'insight::supported_models()'), allowing computation of and conversion between indices such as Cohen's d, r, odds, etc. References: Ben-Shachar et al. (2020) .", "License": "MIT + file LICENSE", @@ -2952,11 +2961,11 @@ "R (>= 4.0)" ], "Imports": [ - "bayestestR (>= 0.16.0)", - "insight (>= 1.3.0)", - "parameters (>= 0.26.0)", - "performance (>= 0.14.0)", - "datawizard (>= 1.1.0)", + "bayestestR (>= 0.17.0)", + "insight (>= 1.4.5)", + "parameters (>= 0.28.3)", + "performance (>= 0.15.3)", + "datawizard (>= 1.3.0)", "stats", "utils" ], @@ -2986,12 +2995,12 @@ "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/Needs/website": "rstudio/bslib, r-lib/pkgdown, easystats/easystatstemplate", "NeedsCompilation": "no", - "Author": "Mattan S. Ben-Shachar [aut, cre] (ORCID: ), Dominique Makowski [aut] (ORCID: ), Daniel L\u00fcdecke [aut] (ORCID: ), Indrajeet Patil [aut] (ORCID: ), Brenton M. Wiernik [aut] (ORCID: ), R\u00e9mi Th\u00e9riault [aut] (ORCID: ), Ken Kelley [ctb], David Stanley [ctb], Aaron Caldwell [ctb] (ORCID: ), Jessica Burnett [rev] (ORCID: ), Johannes Karreth [rev] (ORCID: ), Philip Waggoner [aut, ctb] (ORCID: )", + "Author": "Mattan S. Ben-Shachar [aut, cre] (ORCID: ), Dominique Makowski [aut] (ORCID: ), Daniel Lüdecke [aut] (ORCID: ), Indrajeet Patil [aut] (ORCID: ), Brenton M. Wiernik [aut] (ORCID: ), Rémi Thériault [aut] (ORCID: ), Ken Kelley [ctb], David Stanley [ctb], Aaron Caldwell [ctb] (ORCID: ), Jessica Burnett [rev] (ORCID: ), Johannes Karreth [rev] (ORCID: ), Philip Waggoner [aut, ctb] (ORCID: )", "Repository": "CRAN" }, "eha": { @@ -3001,13 +3010,13 @@ "Encoding": "UTF-8", "Date": "2024-09-19", "Title": "Event History Analysis", - "Description": "Parametric proportional hazards fitting with left truncation and right censoring for common families of distributions, piecewise constant hazards, and discrete models. Parametric accelerated failure time models for left truncated and right censored data. Proportional hazards models for tabular and register data. Sampling of risk sets in Cox regression, selections in the Lexis diagram, bootstrapping. Brostr\u00f6m (2022) .", + "Description": "Parametric proportional hazards fitting with left truncation and right censoring for common families of distributions, piecewise constant hazards, and discrete models. Parametric accelerated failure time models for left truncated and right censored data. Proportional hazards models for tabular and register data. Sampling of risk sets in Cox regression, selections in the Lexis diagram, bootstrapping. Broström (2022) .", "BugReports": "https://github.com/goranbrostrom/eha/issues", "License": "GPL (>= 2)", "LazyData": "yes", "ByteCompile": "yes", "URL": "https://ehar.se/r/eha/", - "Authors@R": "c(person(\"G\u00f6ran\", \"Brostr\u00f6m\", role = c(\"aut\", \"cre\"), email = \"goran.brostrom@umu.se\"), person(\"Jianming\", \"Jin\", role = \"ctb\"))", + "Authors@R": "c(person(\"Göran\", \"Broström\", role = c(\"aut\", \"cre\"), email = \"goran.brostrom@umu.se\"), person(\"Jianming\", \"Jin\", role = \"ctb\"))", "Depends": [ "R (>= 3.5.0)" ], @@ -3017,7 +3026,7 @@ "survival (>= 3.0)" ], "NeedsCompilation": "yes", - "Maintainer": "G\u00f6ran Brostr\u00f6m ", + "Maintainer": "Göran Broström ", "RoxygenNote": "7.3.2", "Suggests": [ "knitr", @@ -3025,12 +3034,12 @@ "bookdown" ], "VignetteBuilder": "knitr, utils", - "Author": "G\u00f6ran Brostr\u00f6m [aut, cre], Jianming Jin [ctb]", + "Author": "Göran Broström [aut, cre], Jianming Jin [ctb]", "Repository": "CRAN" }, "ellipsis": { "Package": "ellipsis", - "Version": "0.3.2", + "Version": "0.3.3", "Source": "Repository", "Title": "Tools for Working with ...", "Description": "The ellipsis is a powerful tool for extending functions. Unfortunately this power comes at a cost: misspelled arguments will be silently ignored. The ellipsis package provides a collection of functions to catch problems and alert the user.", @@ -3044,20 +3053,20 @@ "R (>= 3.2)" ], "Imports": [ - "rlang (>= 0.3.0)" + "rlang (>= 1.1.7)" ], "Suggests": [ "covr", "testthat" ], - "NeedsCompilation": "yes", + "NeedsCompilation": "no", "Author": "Hadley Wickham [aut, cre], RStudio [cph]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "equatiomatic": { "Package": "equatiomatic", - "Version": "0.4.4", + "Version": "0.4.8", "Source": "Repository", "Title": "Transform Models into 'LaTeX' Equations", "Authors@R": "c(person(given = \"Daniel\", family = \"Anderson\", role = \"aut\", email = \"daniela@uoregon.edu\", comment = c(ORCID = \"0000-0003-4699-4680\")), person(given = \"Andrew\", family = \"Heiss\", role = \"aut\", email = \"andrew@andrewheiss.com\", comment = c(ORCID = \"0000-0002-3948-3914\")), person(given = \"Jay\", family = \"Sumners\", role = \"aut\", email = \"jay.sumners@gmail.com\"), person(given = \"Joshua\", family = \"Rosenberg\", role = \"ctb\", email = \"jmrosenberg@utk.edu\", comment = c(ORCID = \"0000-0003-2170-0447\")), person(given = \"Jonathan\", family = \"Sidi\", role = \"ctb\", email = \"yonis@metrumrg.com\", comment = c(ORCID = \"0000-0002-4222-1819\")), person(given = \"Ellis\", family = \"Hughes\", role = \"ctb\", email = \"ellishughes@live.com\", comment = c(ORCID = \"0000-0003-0637-4436\")), person(given = \"Thomas\", family = \"Fung\", role = \"ctb\", email = \"thomas.fung.dr@gmail.com\", comment = c(ORCID = \"0000-0003-2601-0728\")), person(given = \"Reza\", family = \"Norouzian\", role = \"ctb\", email = \"rnorouzian@gmail.com\", comment = c(ORCID = \"0000-0002-0531-6886\")), person(given = \"Indrajeet\", family = \"Patil\", role = \"ctb\", email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(given = \"Quinn\", family = \"White\", role = \"ctb\", email = \"quinnarlise@gmail.com\", comment = c(ORCID = \"0000-0001-5399-0237\")), person(given = \"David\", family = \"Kane\", role = \"ctb\", email = \"dave.kane@gmail.com\"), person(given = \"Philippe\", family = \"Grosjean\", role = \"cre\", email = \"phgrosjean@sciviews.org\", comment = c(ORCID = \"0000-0002-2694-9471\")), person(given = \"Teun\", family = \"van den Brand\", role = \"ctb\", email = \"t.vandenbrand@nki.nl\", comment = c(ORCID = \"0000-0002-9335-7468\")), person(given = \"Guyliann\", family = \"Engels\", role = \"ctb\", email = \"guyliann.engels@umons.ac.be\", comment = c(ORCID = \"0000-0001-9514-1014\")))", @@ -3111,7 +3120,7 @@ "Source": "Repository", "Type": "Package", "Title": "Parsing and Evaluation Tools that Provide More Details than the Default", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Yihui\", \"Xie\", role = \"aut\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Michael\", \"Lawrence\", role = \"ctb\"), person(\"Thomas\", \"Kluyver\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Barret\", \"Schloerke\", role = \"ctb\"), person(\"Adam\", \"Ryczkowski\", role = \"ctb\"), person(\"Hiroaki\", \"Yutani\", role = \"ctb\"), person(\"Michel\", \"Lang\", role = \"ctb\"), person(\"Karolis\", \"Koncevi\u010dius\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Yihui\", \"Xie\", role = \"aut\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Michael\", \"Lawrence\", role = \"ctb\"), person(\"Thomas\", \"Kluyver\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Barret\", \"Schloerke\", role = \"ctb\"), person(\"Adam\", \"Ryczkowski\", role = \"ctb\"), person(\"Hiroaki\", \"Yutani\", role = \"ctb\"), person(\"Michel\", \"Lang\", role = \"ctb\"), person(\"Karolis\", \"Koncevičius\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Parsing and evaluation tools that make it easy to recreate the command line behaviour of R.", "License": "MIT + file LICENSE", "URL": "https://evaluate.r-lib.org/, https://github.com/r-lib/evaluate", @@ -3137,16 +3146,16 @@ "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut, cre], Yihui Xie [aut] (ORCID: ), Michael Lawrence [ctb], Thomas Kluyver [ctb], Jeroen Ooms [ctb], Barret Schloerke [ctb], Adam Ryczkowski [ctb], Hiroaki Yutani [ctb], Michel Lang [ctb], Karolis Koncevi\u010dius [ctb], Posit Software, PBC [cph, fnd]", + "Author": "Hadley Wickham [aut, cre], Yihui Xie [aut] (ORCID: ), Michael Lawrence [ctb], Thomas Kluyver [ctb], Jeroen Ooms [ctb], Barret Schloerke [ctb], Adam Ryczkowski [ctb], Hiroaki Yutani [ctb], Michel Lang [ctb], Karolis Koncevičius [ctb], Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "exactRankTests": { "Package": "exactRankTests", - "Version": "0.8-35", + "Version": "0.8-36", "Source": "Repository", "Title": "Exact Distributions for Rank and Permutation Tests", - "Date": "2022-04-25", + "Date": "2026-03-09", "Authors@R": "c(person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\"), person(\"Kurt\", \"Hornik\", role = \"aut\"))", "Description": "Computes exact conditional p-values and quantiles using an implementation of the Shift-Algorithm by Streitberg & Roehmel.", "Depends": [ @@ -3192,7 +3201,7 @@ "NeedsCompilation": "yes", "Author": "Brodie Gaslam [aut, cre], Elliott Sales De Andrade [ctb], R Core Team [cph] (UTF8 byte length calcs from src/util.c), Michael Chirico [ctb] (ORCID: ), Unicode, Inc. [cph, dtc] (Unicode Character Database derivative data in src/width.c)", "Maintainer": "Brodie Gaslam ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "farver": { "Package": "farver", @@ -3200,7 +3209,7 @@ "Source": "Repository", "Type": "Package", "Title": "High Performance Colour Space Manipulation", - "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Berendea\", \"Nicolae\", role = \"aut\", comment = \"Author of the ColorSpace C++ library\"), person(\"Romain\", \"Fran\u00e7ois\", , \"romain@purrple.cat\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Berendea\", \"Nicolae\", role = \"aut\", comment = \"Author of the ColorSpace C++ library\"), person(\"Romain\", \"François\", , \"romain@purrple.cat\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "The encoding of colour can be handled in many different ways, using different colour spaces. As different colour spaces have different uses, efficient conversion between these representations are important. The 'farver' package provides a set of functions that gives access to very fast colour space conversion and comparisons implemented in C++, and offers speed improvements over the 'convertColor' function in the 'grDevices' package.", "License": "MIT + file LICENSE", "URL": "https://farver.data-imaginist.com, https://github.com/thomasp85/farver", @@ -3213,7 +3222,7 @@ "Encoding": "UTF-8", "RoxygenNote": "7.3.1", "NeedsCompilation": "yes", - "Author": "Thomas Lin Pedersen [cre, aut] (), Berendea Nicolae [aut] (Author of the ColorSpace C++ library), Romain Fran\u00e7ois [aut] (), Posit, PBC [cph, fnd]", + "Author": "Thomas Lin Pedersen [cre, aut] (), Berendea Nicolae [aut] (Author of the ColorSpace C++ library), Romain François [aut] (), Posit, PBC [cph, fnd]", "Maintainer": "Thomas Lin Pedersen ", "Repository": "CRAN" }, @@ -3239,10 +3248,10 @@ }, "fitdistrplus": { "Package": "fitdistrplus", - "Version": "1.2-4", + "Version": "1.2-6", "Source": "Repository", "Title": "Help to Fit of a Parametric Distribution to Non-Censored or Censored Data", - "Authors@R": "c(person(\"Marie-Laure\", \"Delignette-Muller\", role = \"aut\", email = \"marielaure.delignettemuller@vetagro-sup.fr\", comment = c(ORCID = \"0000-0001-5453-3994\")), person(\"Christophe\", \"Dutang\", role = \"aut\", email = \"christophe.dutang@ensimag.fr\", comment = c(ORCID = \"0000-0001-6732-1501\")), person(\"Regis\", \"Pouillot\", role = \"ctb\"), person(\"Jean-Baptiste\", \"Denis\", role = \"ctb\"), person(\"Aur\u00e9lie\", \"Siberchicot\", role = c(\"aut\", \"cre\"), email = \"aurelie.siberchicot@univ-lyon1.fr\", comment = c(ORCID = \"0000-0002-7638-8318\")))", + "Authors@R": "c(person(\"Marie-Laure\", \"Delignette-Muller\", role = \"aut\", email = \"marielaure.delignettemuller@vetagro-sup.fr\", comment = c(ORCID = \"0000-0001-5453-3994\")), person(\"Christophe\", \"Dutang\", role = \"aut\", email = \"christophe.dutang@ensimag.fr\", comment = c(ORCID = \"0000-0001-6732-1501\")), person(\"Regis\", \"Pouillot\", role = \"ctb\"), person(\"Jean-Baptiste\", \"Denis\", role = \"ctb\"), person(\"Aurélie\", \"Siberchicot\", role = c(\"aut\", \"cre\"), email = \"aurelie.siberchicot@univ-lyon1.fr\", comment = c(ORCID = \"0000-0002-7638-8318\")))", "Description": "Extends the fitdistr() function (of the MASS package) with several functions to help the fit of a parametric distribution to non-censored or censored data. Censored data may contain left censored, right censored and interval censored values, with several lower and upper bounds. In addition to maximum likelihood estimation (MLE), the package provides moment matching (MME), quantile matching (QME), maximum goodness-of-fit estimation (MGE) and maximum spacing estimation (MSE) methods (available only for non-censored data). Weighted versions of MLE, MME, QME and MSE are available. See e.g. Casella & Berger (2002), Statistical inference, Pacific Grove, for a general introduction to parametric estimation.", "Depends": [ "R (>= 3.5.0)", @@ -3275,8 +3284,8 @@ "BugReports": "https://github.com/lbbe-software/fitdistrplus/issues", "Contact": "Marie-Laure Delignette-Muller or Christophe Dutang ", "NeedsCompilation": "no", - "Author": "Marie-Laure Delignette-Muller [aut] (ORCID: ), Christophe Dutang [aut] (ORCID: ), Regis Pouillot [ctb], Jean-Baptiste Denis [ctb], Aur\u00e9lie Siberchicot [aut, cre] (ORCID: )", - "Maintainer": "Aur\u00e9lie Siberchicot ", + "Author": "Marie-Laure Delignette-Muller [aut] (ORCID: ), Christophe Dutang [aut] (ORCID: ), Regis Pouillot [ctb], Jean-Baptiste Denis [ctb], Aurélie Siberchicot [aut, cre] (ORCID: )", + "Maintainer": "Aurélie Siberchicot ", "Repository": "CRAN" }, "fontawesome": { @@ -3434,19 +3443,18 @@ ], "LazyData": "yes", "ByteCompile": "TRUE", - "Authors@R": "c( person(\"Rob\", \"Hyndman\", email = \"Rob.Hyndman@monash.edu\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0002-2140-5352\")), person(\"George\", \"Athanasopoulos\", role = \"aut\", comment = c(ORCID = \"0000-0002-5389-2802\")), person(\"Christoph\", \"Bergmeir\", role = \"aut\", comment = c(ORCID = \"0000-0002-3665-9021\")), person(\"Gabriel\", \"Caceres\", role = \"aut\", comment = c(ORCID = \"0000-0002-2947-2023\")), person(\"Leanne\", \"Chhay\", role = \"aut\"), person(\"Kirill\", \"Kuroptev\", role = \"aut\"), person(\"Mitchell\", \"O'Hara-Wild\", role = \"aut\", comment = c(ORCID = \"0000-0001-6729-7695\")), person(\"Fotios\", \"Petropoulos\", role = \"aut\", comment = c(ORCID = \"0000-0003-3039-4955\")), person(\"Slava\", \"Razbash\", role = \"aut\"), person(\"Earo\", \"Wang\", role = \"aut\", comment = c(ORCID = \"0000-0001-6448-5260\")), person(\"Farah\", \"Yasmeen\", role = \"aut\", comment = c(ORCID = \"0000-0002-1479-5401\")), person(\"Federico\", \"Garza\", role = \"ctb\"), person(\"Daniele\", \"Girolimetto\", role = \"ctb\"), person(\"Ross\", \"Ihaka\", role = c(\"ctb\", \"cph\")), person(\"R Core Team\", role = c(\"ctb\", \"cph\")), person(\"Daniel\", \"Reid\", role = \"ctb\"), person(\"David\", \"Shaub\", role = \"ctb\"), person(\"Yuan\", \"Tang\", role = \"ctb\", comment = c(ORCID = \"0000-0001-5243-233X\")), person(\"Xiaoqian\", \"Wang\", role = \"ctb\"), person(\"Zhenyu\", \"Zhou\", role = \"ctb\") )", + "Authors@R": "c( person(\"Rob\", \"Hyndman\", email = \"Rob.Hyndman@monash.edu\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0002-2140-5352\")), person(\"George\", \"Athanasopoulos\", role = \"aut\", comment = c(ORCID = \"0000-0002-5389-2802\")), person(\"Christoph\", \"Bergmeir\", role = \"aut\", comment = c(ORCID = \"0000-0002-3665-9021\")), person(\"Gabriel\", \"Caceres\", role = \"aut\", comment = c(ORCID = \"0000-0002-2947-2023\")), person(\"Leanne\", \"Chhay\", role = \"aut\"), person(\"Kirill\", \"Kuroptev\", role = \"aut\"), person(\"Maximilian\", \"Mücke\", role = \"aut\", comment = c(ORCID = \"0009-0000-9432-9795\")), person(\"Mitchell\", \"O'Hara-Wild\", role = \"aut\", comment = c(ORCID = \"0000-0001-6729-7695\")), person(\"Fotios\", \"Petropoulos\", role = \"aut\", comment = c(ORCID = \"0000-0003-3039-4955\")), person(\"Slava\", \"Razbash\", role = \"aut\"), person(\"Earo\", \"Wang\", role = \"aut\", comment = c(ORCID = \"0000-0001-6448-5260\")), person(\"Farah\", \"Yasmeen\", role = \"aut\", comment = c(ORCID = \"0000-0002-1479-5401\")), person(\"Federico\", \"Garza\", role = \"ctb\"), person(\"Daniele\", \"Girolimetto\", role = \"ctb\"), person(\"Ross\", \"Ihaka\", role = c(\"ctb\", \"cph\")), person(\"R Core Team\", role = c(\"ctb\", \"cph\")), person(\"Daniel\", \"Reid\", role = \"ctb\"), person(\"David\", \"Shaub\", role = \"ctb\"), person(\"Yuan\", \"Tang\", role = \"ctb\", comment = c(ORCID = \"0000-0001-5243-233X\")), person(\"Xiaoqian\", \"Wang\", role = \"ctb\"), person(\"Zhenyu\", \"Zhou\", role = \"ctb\") )", "BugReports": "https://github.com/robjhyndman/forecast/issues", "License": "GPL-3", "URL": "https://pkg.robjhyndman.com/forecast/, https://github.com/robjhyndman/forecast", "VignetteBuilder": "knitr", + "RoxygenNote": "7.3.3", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "NeedsCompilation": "yes", - "Author": "Rob Hyndman [aut, cre, cph] (), George Athanasopoulos [aut] (), Christoph Bergmeir [aut] (), Gabriel Caceres [aut] (), Leanne Chhay [aut], Kirill Kuroptev [aut], Mitchell O'Hara-Wild [aut] (), Fotios Petropoulos [aut] (), Slava Razbash [aut], Earo Wang [aut] (), Farah Yasmeen [aut] (), Federico Garza [ctb], Daniele Girolimetto [ctb], Ross Ihaka [ctb, cph], R Core Team [ctb, cph], Daniel Reid [ctb], David Shaub [ctb], Yuan Tang [ctb] (), Xiaoqian Wang [ctb], Zhenyu Zhou [ctb]", + "Author": "Rob Hyndman [aut, cre, cph] (ORCID: ), George Athanasopoulos [aut] (ORCID: ), Christoph Bergmeir [aut] (ORCID: ), Gabriel Caceres [aut] (ORCID: ), Leanne Chhay [aut], Kirill Kuroptev [aut], Maximilian Mücke [aut] (ORCID: ), Mitchell O'Hara-Wild [aut] (ORCID: ), Fotios Petropoulos [aut] (ORCID: ), Slava Razbash [aut], Earo Wang [aut] (ORCID: ), Farah Yasmeen [aut] (ORCID: ), Federico Garza [ctb], Daniele Girolimetto [ctb], Ross Ihaka [ctb, cph], R Core Team [ctb, cph], Daniel Reid [ctb], David Shaub [ctb], Yuan Tang [ctb] (ORCID: ), Xiaoqian Wang [ctb], Zhenyu Zhou [ctb]", "Maintainer": "Rob Hyndman ", - "Repository": "https://packagemanager.posit.co/cran/latest", - "Date/Publication": "2026-03-18 06:13:07 UTC" + "Repository": "CRAN" }, "fracdiff": { "Package": "fracdiff", @@ -3472,20 +3480,20 @@ "NeedsCompilation": "yes", "Author": "Martin Maechler [aut, cre] (), Chris Fraley [ctb, cph] (S original; Fortran code), Friedrich Leisch [ctb] (R port, ), Valderio Reisen [ctb] (fdGPH() & fdSperio()), Artur Lemonte [ctb] (fdGPH() & fdSperio()), Rob Hyndman [ctb] (residuals() & fitted(), )", "Maintainer": "Martin Maechler ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "fs": { "Package": "fs", - "Version": "1.6.6", + "Version": "2.1.0", "Source": "Repository", "Title": "Cross-Platform File System Operations Based on 'libuv'", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", , \"jeroenooms@gmail.com\", role = \"cre\"), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "A cross-platform interface to file system operations, built on top of the 'libuv' C library.", "License": "MIT + file LICENSE", "URL": "https://fs.r-lib.org, https://github.com/r-lib/fs", "BugReports": "https://github.com/r-lib/fs/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "methods" @@ -3503,64 +3511,60 @@ "withr" ], "VignetteBuilder": "knitr", - "ByteCompile": "true", + "SystemRequirements": "libuv: libuv-devel (rpm) or libuv1-dev (deb). Alternatively to build the vendored libuv 'cmake' is required. GNU make.", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-23", "Copyright": "file COPYRIGHTS", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.2.3", - "SystemRequirements": "GNU make", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Jim Hester [aut], Hadley Wickham [aut], G\u00e1bor Cs\u00e1rdi [aut, cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd]", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Jim Hester [aut], Hadley Wickham [aut], Gábor Csárdi [aut], Jeroen Ooms [cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, "furrr": { "Package": "furrr", - "Version": "0.3.1", + "Version": "0.4.0", "Source": "Repository", "Title": "Apply Mapping Functions in Parallel using Futures", - "Authors@R": "c( person(\"Davis\", \"Vaughan\", , \"davis@rstudio.com\", role = c(\"aut\", \"cre\")), person(\"Matt\", \"Dancho\", , \"mdancho@business-science.io\", role = \"aut\"), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Henrik\", \"Bengtsson\", , \"henrikb@braju.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-7579-5165\")), person(\"Matt\", \"Dancho\", , \"mdancho@business-science.io\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Implementations of the family of map() functions from 'purrr' that can be resolved using any 'future'-supported backend, e.g. parallel on the local machine or distributed on a compute cluster.", "License": "MIT + file LICENSE", - "URL": "https://github.com/DavisVaughan/furrr, https://furrr.futureverse.org/", - "BugReports": "https://github.com/DavisVaughan/furrr/issues", + "URL": "https://github.com/futureverse/furrr, https://furrr.futureverse.org/", + "BugReports": "https://github.com/futureverse/furrr/issues", "Depends": [ - "future (>= 1.25.0)", - "R (>= 3.4.0)" + "future (>= 1.70.0)", + "R (>= 4.1.0)" ], "Imports": [ - "globals (>= 0.14.0)", - "lifecycle (>= 1.0.1)", - "purrr (>= 0.3.4)", - "rlang (>= 1.0.2)", - "vctrs (>= 0.4.1)" + "globals (>= 0.19.1)", + "purrr (>= 1.2.1)", + "rlang (>= 1.1.7)", + "vctrs (>= 0.7.0)" ], "Suggests": [ "carrier", "covr", - "dplyr (>= 0.7.4)", + "dplyr (>= 1.1.4)", "knitr", - "listenv (>= 0.6.0)", - "magrittr", - "rmarkdown", - "testthat (>= 3.0.0)", - "tidyselect", - "withr" + "parallelly (>= 1.46.1)", + "testthat (>= 3.3.2)", + "tidyselect" ], "Config/Needs/website": "progressr", "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.2.1", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Davis Vaughan [aut, cre], Matt Dancho [aut], RStudio [cph, fnd]", - "Maintainer": "Davis Vaughan ", + "Author": "Davis Vaughan [aut, cre] (ORCID: ), Henrik Bengtsson [aut] (ORCID: ), Matt Dancho [aut], Posit Software, PBC [cph, fnd]", + "Maintainer": "Davis Vaughan ", "Repository": "CRAN" }, "future": { "Package": "future", - "Version": "1.68.0", + "Version": "1.70.0", "Source": "Repository", "Title": "Unified Parallel and Distributed Processing in R for Everyone", "Depends": [ @@ -3572,6 +3576,7 @@ "listenv (>= 0.8.0)", "parallel", "parallelly (>= 1.44.0)", + "tools", "utils" ], "Suggests": [ @@ -3591,15 +3596,15 @@ "Language": "en-US", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", - "Collate": "'000.bquote.R' '000.import.R' '000.re-exports.R' '010.tweakable.R' '010.utils-parallelly.R' 'backend_api-01-FutureBackend-class.R' 'backend_api-03.MultiprocessFutureBackend-class.R' 'backend_api-11.ClusterFutureBackend-class.R' 'backend_api-11.MulticoreFutureBackend-class.R' 'backend_api-11.SequentialFutureBackend-class.R' 'backend_api-13.MultisessionFutureBackend-class.R' 'backend_api-ConstantFuture-class.R' 'backend_api-Future-class.R' 'backend_api-FutureRegistry.R' 'backend_api-UniprocessFuture-class.R' 'backend_api-evalFuture.R' 'core_api-cancel.R' 'core_api-future.R' 'core_api-reset.R' 'core_api-resolved.R' 'core_api-value.R' 'delayed_api-futureAssign.R' 'delayed_api-futureOf.R' 'demo_api-mandelbrot.R' 'infix_api-01-futureAssign_OP.R' 'infix_api-02-globals_OP.R' 'infix_api-03-seed_OP.R' 'infix_api-04-stdout_OP.R' 'infix_api-05-conditions_OP.R' 'infix_api-06-lazy_OP.R' 'infix_api-07-label_OP.R' 'infix_api-08-plan_OP.R' 'infix_api-09-tweak_OP.R' 'protected_api-FutureCondition-class.R' 'protected_api-FutureGlobals-class.R' 'protected_api-FutureResult-class.R' 'protected_api-futures.R' 'protected_api-globals.R' 'protected_api-journal.R' 'protected_api-resolve.R' 'protected_api-signalConditions.R' 'testme.R' 'utils-basic.R' 'utils-conditions.R' 'utils-connections.R' 'utils-debug.R' 'utils-immediateCondition.R' 'utils-marshalling.R' 'utils-objectSize.R' 'utils-options.R' 'utils-prune_pkg_code.R' 'utils-registerClusterTypes.R' 'utils-rng_utils.R' 'utils-signalEarly.R' 'utils-stealth_sample.R' 'utils-sticky_globals.R' 'utils-tweakExpression.R' 'utils-uuid.R' 'utils-whichIndex.R' 'utils_api-backtrace.R' 'utils_api-capture_journals.R' 'utils_api-futureCall.R' 'utils_api-futureSessionInfo.R' 'utils_api-makeClusterFuture.R' 'utils_api-minifuture.R' 'utils_api-nbrOfWorkers.R' 'utils_api-plan.R' 'utils_api-plan-with.R' 'utils_api-sessionDetails.R' 'utils_api-tweak.R' 'zzz.R'", + "Collate": "'000.bquote.R' '000.import.R' '000.re-exports.R' '009.deprecation.R' '010.tweakable.R' '010.utils-parallelly.R' 'backend_api-01-FutureBackend-class.R' 'backend_api-03.MultiprocessFutureBackend-class.R' 'backend_api-11.ClusterFutureBackend-class.R' 'backend_api-11.MulticoreFutureBackend-class.R' 'backend_api-11.SequentialFutureBackend-class.R' 'backend_api-13.MultisessionFutureBackend-class.R' 'backend_api-ConstantFuture-class.R' 'backend_api-Future-class.R' 'backend_api-FutureRegistry.R' 'backend_api-UniprocessFuture-class.R' 'backend_api-evalFuture.R' 'core_api-cancel.R' 'core_api-future.R' 'core_api-reset.R' 'core_api-resolved.R' 'core_api-value.R' 'delayed_api-futureAssign.R' 'delayed_api-futureOf.R' 'demo_api-mandelbrot.R' 'infix_api-01-futureAssign_OP.R' 'infix_api-02-globals_OP.R' 'infix_api-03-seed_OP.R' 'infix_api-04-stdout_OP.R' 'infix_api-05-conditions_OP.R' 'infix_api-06-lazy_OP.R' 'infix_api-07-label_OP.R' 'infix_api-08-plan_OP.R' 'infix_api-09-tweak_OP.R' 'protected_api-FutureCondition-class.R' 'protected_api-FutureGlobals-class.R' 'protected_api-FutureResult-class.R' 'protected_api-futures.R' 'protected_api-globals.R' 'protected_api-journal.R' 'protected_api-resolve.R' 'protected_api-result.R' 'protected_api-signalConditions.R' 'testme.R' 'utils-basic.R' 'utils-conditions.R' 'utils-connections.R' 'utils-debug.R' 'utils-immediateCondition.R' 'utils-marshalling.R' 'utils-objectSize.R' 'utils-options.R' 'utils-prune_pkg_code.R' 'utils-registerClusterTypes.R' 'utils-rng_utils.R' 'utils-signalEarly.R' 'utils-stealth_sample.R' 'utils-sticky_globals.R' 'utils-tweakExpression.R' 'utils-uuid.R' 'utils-whichIndex.R' 'utils_api-backtrace.R' 'utils_api-capture_journals.R' 'utils_api-futureCall.R' 'utils_api-futureSessionInfo.R' 'utils_api-makeClusterFuture.R' 'utils_api-minifuture.R' 'utils_api-nbrOfWorkers.R' 'utils_api-plan.R' 'utils_api-plan-with.R' 'utils_api-sessionDetails.R' 'utils_api-tweak.R' 'zzz.R'", "NeedsCompilation": "no", "Author": "Henrik Bengtsson [aut, cre, cph] (ORCID: )", "Maintainer": "Henrik Bengtsson ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "gargle": { "Package": "gargle", - "Version": "1.6.0", + "Version": "1.6.1", "Source": "Repository", "Title": "Utilities for Working with Google APIs", "Authors@R": "c( person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Craig\", \"Citro\", , \"craigcitro@google.com\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Google Inc\", role = \"cph\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -3608,7 +3613,7 @@ "URL": "https://gargle.r-lib.org, https://github.com/r-lib/gargle", "BugReports": "https://github.com/r-lib/gargle/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "cli (>= 3.0.1)", @@ -3640,7 +3645,7 @@ "Config/testthat/edition": "3", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.3.2.9000", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "Jennifer Bryan [aut, cre] (ORCID: ), Craig Citro [aut], Hadley Wickham [aut] (ORCID: ), Google Inc [cph], Posit Software, PBC [cph, fnd]", "Maintainer": "Jennifer Bryan ", @@ -3680,7 +3685,7 @@ }, "gert": { "Package": "gert", - "Version": "2.2.0", + "Version": "2.3.1", "Source": "Repository", "Type": "Package", "Title": "Simple Git Client for R", @@ -3705,13 +3710,13 @@ ], "VignetteBuilder": "knitr", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2.9000", + "RoxygenNote": "7.3.3", "SystemRequirements": "libgit2 (>= 1.0): libgit2-devel (rpm) or libgit2-dev (deb)", "Language": "en-US", "NeedsCompilation": "yes", "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Jennifer Bryan [ctb] (ORCID: )", "Maintainer": "Jeroen Ooms ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "ggdag": { "Package": "ggdag", @@ -3759,7 +3764,7 @@ "NeedsCompilation": "no", "Author": "Malcolm Barrett [aut, cre] ()", "Maintainer": "Malcolm Barrett ", - "Repository": "https://packagemanager.posit.co/cran/__linux__/noble/latest" + "Repository": "CRAN" }, "ggeffects": { "Package": "ggeffects", @@ -3768,8 +3773,8 @@ "Type": "Package", "Encoding": "UTF-8", "Title": "Create Tidy Data Frames of Marginal Effects for 'ggplot' from Model Outputs", - "Authors@R": "c( person(\"Daniel\", \"L\u00fcdecke\", role = c(\"aut\", \"cre\"), email = \"d.luedecke@uke.de\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(\"Frederik\", \"Aust\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4900-788X\")), person(\"Sam\", \"Crawley\", role = \"ctb\", email = \"sam@crawley.nz\", comment = c(ORCID = \"0000-0002-7847-0411\")), person(c(\"Mattan\", \"S.\"), \"Ben-Shachar\", role = \"ctb\", email = \"matanshm@post.bgu.ac.il\", comment = c(ORCID = \"0000-0002-4287-4801\")), person(c(\"Sean\", \"C.\"), \"Anderson\", role = \"ctb\", email = \"sean@seananderson.ca\", comment = c(ORCID = \"0000-0001-9563-1937\")) )", - "Maintainer": "Daniel L\u00fcdecke ", + "Authors@R": "c( person(\"Daniel\", \"Lüdecke\", role = c(\"aut\", \"cre\"), email = \"d.luedecke@uke.de\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(\"Frederik\", \"Aust\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4900-788X\")), person(\"Sam\", \"Crawley\", role = \"ctb\", email = \"sam@crawley.nz\", comment = c(ORCID = \"0000-0002-7847-0411\")), person(c(\"Mattan\", \"S.\"), \"Ben-Shachar\", role = \"ctb\", email = \"matanshm@post.bgu.ac.il\", comment = c(ORCID = \"0000-0002-4287-4801\")), person(c(\"Sean\", \"C.\"), \"Anderson\", role = \"ctb\", email = \"sean@seananderson.ca\", comment = c(ORCID = \"0000-0001-9563-1937\")) )", + "Maintainer": "Daniel Lüdecke ", "Description": "Compute marginal effects and adjusted predictions from statistical models and returns the result as tidy data frames. These data frames are ready to use with the 'ggplot2'-package. Effects and predictions can be calculated for many different models. Interaction terms, splines and polynomial terms are also supported. The main functions are ggpredict(), ggemmeans() and ggeffect(). There is a generic plot()-method to plot the results using 'ggplot2'.", "Depends": [ "R (>= 3.6)" @@ -3867,7 +3872,7 @@ "License": "MIT + file LICENSE", "LazyData": "true", "NeedsCompilation": "no", - "Author": "Daniel L\u00fcdecke [aut, cre] (ORCID: ), Frederik Aust [ctb] (ORCID: ), Sam Crawley [ctb] (ORCID: ), Mattan S. Ben-Shachar [ctb] (ORCID: ), Sean C. Anderson [ctb] (ORCID: )", + "Author": "Daniel Lüdecke [aut, cre] (ORCID: ), Frederik Aust [ctb] (ORCID: ), Sam Crawley [ctb] (ORCID: ), Mattan S. Ben-Shachar [ctb] (ORCID: ), Sean C. Anderson [ctb] (ORCID: )", "Repository": "CRAN" }, "ggforce": { @@ -3920,7 +3925,7 @@ "Collate": "'aaa.R' 'shape.R' 'arc_bar.R' 'arc.R' 'autodensity.R' 'autohistogram.R' 'autopoint.R' 'bezier.R' 'bspline.R' 'bspline_closed.R' 'circle.R' 'concaveman.R' 'cpp11.R' 'diagonal.R' 'diagonal_wide.R' 'ellipse.R' 'errorbar.R' 'facet_grid_paginate.R' 'facet_matrix.R' 'facet_row.R' 'facet_stereo.R' 'facet_wrap_paginate.R' 'facet_zoom.R' 'ggforce-package.R' 'ggproto-classes.R' 'interpolate.R' 'labeller.R' 'link.R' 'mark_circle.R' 'mark_ellipse.R' 'mark_hull.R' 'mark_label.R' 'mark_rect.R' 'parallel_sets.R' 'position-jitternormal.R' 'position_auto.R' 'position_floatstack.R' 'regon.R' 'scale-depth.R' 'scale-unit.R' 'sina.R' 'spiro.R' 'themes.R' 'trans.R' 'trans_linear.R' 'utilities.R' 'voronoi.R' 'zzz.R'", "NeedsCompilation": "yes", "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: ), RStudio [cph]", - "Repository": "https://packagemanager.posit.co/cran/__linux__/noble/latest" + "Repository": "CRAN" }, "ggfortify": { "Package": "ggfortify", @@ -3929,7 +3934,7 @@ "Type": "Package", "Title": "Data Visualization Tools for Statistical Analysis Results", "Date": "2025-07-26", - "Authors@R": "c( person(\"Masaaki\", \"Horikoshi\", role = c(\"aut\"), email = \"sinhrks@gmail.com\"), person(\"Yuan\", \"Tang\", role = c(\"aut\", \"cre\"), email = \"terrytangyuan@gmail.com\", comment = c(ORCID = \"0000-0001-5243-233X\")), person(\"Austin\", \"Dickey\", role = c(\"ctb\")), person(\"Matthias\", \"Greni\u00e9\", role = c(\"ctb\")), person(\"Ryan\", \"Thompson\", role = c(\"ctb\")), person(\"Luciano\", \"Selzer\", role = c(\"ctb\")), person(\"Dario\", \"Strbenac\", role = c(\"ctb\")), person(\"Kirill\", \"Voronin\", role = c(\"ctb\")), person(\"Damir\", \"Pulatov\", role = c(\"ctb\")) )", + "Authors@R": "c( person(\"Masaaki\", \"Horikoshi\", role = c(\"aut\"), email = \"sinhrks@gmail.com\"), person(\"Yuan\", \"Tang\", role = c(\"aut\", \"cre\"), email = \"terrytangyuan@gmail.com\", comment = c(ORCID = \"0000-0001-5243-233X\")), person(\"Austin\", \"Dickey\", role = c(\"ctb\")), person(\"Matthias\", \"Grenié\", role = c(\"ctb\")), person(\"Ryan\", \"Thompson\", role = c(\"ctb\")), person(\"Luciano\", \"Selzer\", role = c(\"ctb\")), person(\"Dario\", \"Strbenac\", role = c(\"ctb\")), person(\"Kirill\", \"Voronin\", role = c(\"ctb\")), person(\"Damir\", \"Pulatov\", role = c(\"ctb\")) )", "Maintainer": "Yuan Tang ", "URL": "https://github.com/sinhrks/ggfortify", "BugReports": "https://github.com/sinhrks/ggfortify/issues", @@ -3982,12 +3987,12 @@ ], "RoxygenNote": "7.3.2", "NeedsCompilation": "no", - "Author": "Masaaki Horikoshi [aut], Yuan Tang [aut, cre] (ORCID: ), Austin Dickey [ctb], Matthias Greni\u00e9 [ctb], Ryan Thompson [ctb], Luciano Selzer [ctb], Dario Strbenac [ctb], Kirill Voronin [ctb], Damir Pulatov [ctb]", + "Author": "Masaaki Horikoshi [aut], Yuan Tang [aut, cre] (ORCID: ), Austin Dickey [ctb], Matthias Grenié [ctb], Ryan Thompson [ctb], Luciano Selzer [ctb], Dario Strbenac [ctb], Kirill Voronin [ctb], Damir Pulatov [ctb]", "Repository": "CRAN" }, "ggplot2": { "Package": "ggplot2", - "Version": "4.0.1", + "Version": "4.0.3", "Source": "Repository", "Title": "Create Elegant Data Visualisations Using the Grammar of Graphics", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Winston\", \"Chang\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Lionel\", \"Henry\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Kohske\", \"Takahashi\", role = \"aut\"), person(\"Claus\", \"Wilke\", role = \"aut\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(\"Kara\", \"Woo\", role = \"aut\", comment = c(ORCID = \"0000-0002-5125-4188\")), person(\"Hiroaki\", \"Yutani\", role = \"aut\", comment = c(ORCID = \"0000-0002-3385-7233\")), person(\"Dewey\", \"Dunnington\", role = \"aut\", comment = c(ORCID = \"0000-0002-9415-4582\")), person(\"Teun\", \"van den Brand\", role = \"aut\", comment = c(ORCID = \"0000-0002-9335-7468\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", @@ -4056,22 +4061,21 @@ "NeedsCompilation": "no", "Author": "Hadley Wickham [aut] (ORCID: ), Winston Chang [aut] (ORCID: ), Lionel Henry [aut], Thomas Lin Pedersen [aut, cre] (ORCID: ), Kohske Takahashi [aut], Claus Wilke [aut] (ORCID: ), Kara Woo [aut] (ORCID: ), Hiroaki Yutani [aut] (ORCID: ), Dewey Dunnington [aut] (ORCID: ), Teun van den Brand [aut] (ORCID: ), Posit, PBC [cph, fnd] (ROR: )", "Maintainer": "Thomas Lin Pedersen ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "ggpubr": { "Package": "ggpubr", - "Version": "0.6.2", + "Version": "0.6.3", "Source": "Repository", "Type": "Package", "Title": "'ggplot2' Based Publication Ready Plots", - "Date": "2025-10-17", - "Authors@R": "c( person(\"Alboukadel\", \"Kassambara\", role = c(\"aut\", \"cre\"), email = \"alboukadel.kassambara@gmail.com\"))", + "Authors@R": "c( person(\"Alboukadel\", \"Kassambara\", role = c(\"aut\", \"cre\"), email = \"alboukadel.kassambara@gmail.com\"), person(\"Laszlo\", \"Erdey\", role = \"ctb\", email = \"erdey.laszlo@econ.unideb.hu\", comment = \"Faculty of Economics and Business, University of Debrecen, Hungary\"))", "Description": "The 'ggplot2' package is excellent and flexible for elegant data visualization in R. However the default generated plots requires some formatting before we can send them for publication. Furthermore, to customize a 'ggplot', the syntax is opaque and this raises the level of difficulty for researchers with no advanced R programming skills. 'ggpubr' provides some easy-to-use functions for creating and customizing 'ggplot2'- based publication ready plots.", "License": "GPL (>= 2)", "LazyData": "TRUE", "Encoding": "UTF-8", "Depends": [ - "R (>= 3.1.0)", + "R (>= 4.1.0)", "ggplot2 (>= 3.5.2)" ], "Imports": [ @@ -4082,7 +4086,7 @@ "utils", "tidyr (>= 1.3.0)", "purrr", - "dplyr (>= 0.7.1)", + "dplyr (>= 1.1.0)", "cowplot (>= 1.1.1)", "ggsignif", "scales", @@ -4103,10 +4107,10 @@ ], "URL": "https://rpkgs.datanovia.com/ggpubr/", "BugReports": "https://github.com/kassambara/ggpubr/issues", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "Collate": "'utilities_color.R' 'utilities_base.R' 'desc_statby.R' 'utilities.R' 'add_summary.R' 'annotate_figure.R' 'as_ggplot.R' 'as_npc.R' 'axis_scale.R' 'background_image.R' 'bgcolor.R' 'border.R' 'compare_means.R' 'create_aes.R' 'diff_express.R' 'facet.R' 'font.R' 'gene_citation.R' 'gene_expression.R' 'geom_bracket.R' 'geom_exec.R' 'utils-aes.R' 'utils_stat_test_label.R' 'geom_pwc.R' 'get_breaks.R' 'get_coord.R' 'get_legend.R' 'get_palette.R' 'ggadd.R' 'ggadjust_pvalue.R' 'ggarrange.R' 'ggballoonplot.R' 'ggpar.R' 'ggbarplot.R' 'ggboxplot.R' 'ggdensity.R' 'ggpie.R' 'ggdonutchart.R' 'stat_conf_ellipse.R' 'stat_chull.R' 'ggdotchart.R' 'ggdotplot.R' 'ggecdf.R' 'ggerrorplot.R' 'ggexport.R' 'gghistogram.R' 'ggline.R' 'ggmaplot.R' 'ggpaired.R' 'ggparagraph.R' 'ggpubr-package.R' 'ggpubr_args.R' 'ggpubr_options.R' 'ggqqplot.R' 'utilities_label.R' 'stat_cor.R' 'stat_stars.R' 'ggscatter.R' 'ggscatterhist.R' 'ggstripchart.R' 'ggsummarystats.R' 'ggtext.R' 'ggtexttable.R' 'ggviolin.R' 'gradient_color.R' 'grids.R' 'npc_to_data_coord.R' 'reexports.R' 'rotate.R' 'rotate_axis_text.R' 'rremove.R' 'set_palette.R' 'shared_docs.R' 'show_line_types.R' 'show_point_shapes.R' 'stat_anova_test.R' 'stat_central_tendency.R' 'stat_compare_means.R' 'stat_friedman_test.R' 'stat_kruskal_test.R' 'stat_mean.R' 'stat_overlay_normal_density.R' 'stat_pvalue_manual.R' 'stat_regline_equation.R' 'stat_welch_anova_test.R' 'text_grob.R' 'theme_pubr.R' 'theme_transparent.R' 'utils-geom-signif.R' 'utils-pipe.R' 'utils-tidyr.R'", "NeedsCompilation": "no", - "Author": "Alboukadel Kassambara [aut, cre]", + "Author": "Alboukadel Kassambara [aut, cre], Laszlo Erdey [ctb] (Faculty of Economics and Business, University of Debrecen, Hungary)", "Maintainer": "Alboukadel Kassambara ", "Repository": "CRAN" }, @@ -4168,25 +4172,26 @@ "BugReports": "https://github.com/thomasp85/ggraph/issues", "NeedsCompilation": "yes", "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: ), RStudio [cph]", - "Repository": "https://packagemanager.posit.co/cran/__linux__/noble/latest" + "Repository": "CRAN" }, "ggrepel": { "Package": "ggrepel", - "Version": "0.9.6", + "Version": "0.9.8", "Source": "Repository", - "Authors@R": "c( person(\"Kamil\", \"Slowikowski\", email = \"kslowikowski@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-2843-6370\")), person(\"Alicia\", \"Schep\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3915-0618\")), person(\"Sean\", \"Hughes\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9409-9405\")), person(\"Trung Kien\", \"Dang\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7562-6495\")), person(\"Saulius\", \"Lukauskas\", role = \"ctb\"), person(\"Jean-Olivier\", \"Irisson\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4920-3880\")), person(\"Zhian N\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(\"Thompson\", \"Ryan\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0450-8181\")), person(\"Dervieux\", \"Christophe\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Yutani\", \"Hiroaki\", role = \"ctb\"), person(\"Pierre\", \"Gramme\", role = \"ctb\"), person(\"Amir Masoud\", \"Abdol\", role = \"ctb\"), person(\"Malcolm\", \"Barrett\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Robrecht\", \"Cannoodt\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3641-729X\")), person(\"Micha\u0142\", \"Krassowski\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9638-7785\")), person(\"Michael\", \"Chirico\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Pedro\", \"Aphalo\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3385-972X\")), person(\"Francis\", \"Barton\", role = \"ctb\") )", + "Authors@R": "c( person(\"Kamil\", \"Slowikowski\", email = \"kslowikowski@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-2843-6370\")), person(\"Teun\", \"van den Brand\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9335-7468\")), person(\"Alicia\", \"Schep\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3915-0618\")), person(\"Sean\", \"Hughes\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9409-9405\")), person(\"Trung Kien\", \"Dang\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7562-6495\")), person(\"Saulius\", \"Lukauskas\", role = \"ctb\"), person(\"Jean-Olivier\", \"Irisson\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4920-3880\")), person(\"Zhian N\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(\"Thompson\", \"Ryan\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0450-8181\")), person(\"Dervieux\", \"Christophe\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4474-2498\")), person(\"Yutani\", \"Hiroaki\", role = \"ctb\"), person(\"Pierre\", \"Gramme\", role = \"ctb\"), person(\"Amir Masoud\", \"Abdol\", role = \"ctb\"), person(\"Malcolm\", \"Barrett\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Robrecht\", \"Cannoodt\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3641-729X\")), person(\"Michał\", \"Krassowski\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9638-7785\")), person(\"Michael\", \"Chirico\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Pedro\", \"Aphalo\", role = \"ctb\", comment = c(ORCID = \"0000-0003-3385-972X\")), person(\"Francis\", \"Barton\", role = \"ctb\") )", "Title": "Automatically Position Non-Overlapping Text Labels with 'ggplot2'", "Description": "Provides text and label geoms for 'ggplot2' that help to avoid overlapping text labels. Labels repel away from each other and away from the data points.", "Depends": [ - "R (>= 3.0.0)", - "ggplot2 (>= 2.2.0)" + "R (>= 4.1.0)", + "ggplot2 (>= 3.5.2)" ], "Imports": [ "grid", "Rcpp", - "rlang (>= 0.3.0)", - "scales (>= 0.5.0)", - "withr (>= 2.5.0)" + "rlang (>= 1.1.6)", + "S7", + "scales (>= 1.4.0)", + "withr (>= 3.0.2)" ], "Suggests": [ "knitr", @@ -4203,29 +4208,32 @@ "dplyr", "magrittr", "readr", - "stringr" + "stringr", + "marquee", + "rsvg", + "sf" ], "VignetteBuilder": "knitr", "License": "GPL-3 | file LICENSE", "URL": "https://ggrepel.slowkow.com/, https://github.com/slowkow/ggrepel", "BugReports": "https://github.com/slowkow/ggrepel/issues", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.3", "LinkingTo": [ "Rcpp" ], "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "Kamil Slowikowski [aut, cre] (), Alicia Schep [ctb] (), Sean Hughes [ctb] (), Trung Kien Dang [ctb] (), Saulius Lukauskas [ctb], Jean-Olivier Irisson [ctb] (), Zhian N Kamvar [ctb] (), Thompson Ryan [ctb] (), Dervieux Christophe [ctb] (), Yutani Hiroaki [ctb], Pierre Gramme [ctb], Amir Masoud Abdol [ctb], Malcolm Barrett [ctb] (), Robrecht Cannoodt [ctb] (), Micha\u0142 Krassowski [ctb] (), Michael Chirico [ctb] (), Pedro Aphalo [ctb] (), Francis Barton [ctb]", + "Author": "Kamil Slowikowski [aut, cre] (ORCID: ), Teun van den Brand [ctb] (ORCID: ), Alicia Schep [ctb] (ORCID: ), Sean Hughes [ctb] (ORCID: ), Trung Kien Dang [ctb] (ORCID: ), Saulius Lukauskas [ctb], Jean-Olivier Irisson [ctb] (ORCID: ), Zhian N Kamvar [ctb] (ORCID: ), Thompson Ryan [ctb] (ORCID: ), Dervieux Christophe [ctb] (ORCID: ), Yutani Hiroaki [ctb], Pierre Gramme [ctb], Amir Masoud Abdol [ctb], Malcolm Barrett [ctb] (ORCID: ), Robrecht Cannoodt [ctb] (ORCID: ), Michał Krassowski [ctb] (ORCID: ), Michael Chirico [ctb] (ORCID: ), Pedro Aphalo [ctb] (ORCID: ), Francis Barton [ctb]", "Maintainer": "Kamil Slowikowski ", "Repository": "CRAN" }, "ggsci": { "Package": "ggsci", - "Version": "4.2.0", + "Version": "5.0.0", "Source": "Repository", "Type": "Package", "Title": "Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'", - "Authors@R": "c( person(\"Nan\", \"Xiao\", email = \"me@nanx.me\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0002-0250-5673\")), person(\"Joshua\", \"Cook\", email = \"joshuacook0023@gmail.com\", role = \"ctb\"), person(\"Clara\", \"J\u00e9gousse\", email = \"cat3@hi.is\", role = \"ctb\"), person(\"Hui\", \"Chen\", email = \"huichen@zju.edu.cn\", role = \"ctb\"), person(\"Miaozhu\", \"Li\", email = \"miaozhu.li@duke.edu\", role = \"ctb\"), person(\"iTerm2-Color-Schemes contributors\", role = c(\"ctb\", \"cph\"), comment = \"iTerm2-Color-Schemes project\"), person(\"Winston\", \"Chang\", role = c(\"ctb\", \"cph\"), comment = \"staticimports.R\") )", + "Authors@R": "c( person(\"Nan\", \"Xiao\", email = \"me@nanx.me\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0002-0250-5673\")), person(\"Joshua\", \"Cook\", email = \"joshuacook0023@gmail.com\", role = \"ctb\"), person(\"Clara\", \"Jégousse\", email = \"cat3@hi.is\", role = \"ctb\"), person(\"Hui\", \"Chen\", email = \"huichen@zju.edu.cn\", role = \"ctb\"), person(\"Miaozhu\", \"Li\", email = \"miaozhu.li@duke.edu\", role = \"ctb\"), person(\"iTerm2-Color-Schemes contributors\", role = c(\"ctb\", \"cph\"), comment = \"iTerm2-Color-Schemes project\"), person(\"Winston\", \"Chang\", role = c(\"ctb\", \"cph\"), comment = \"staticimports.R\") )", "Maintainer": "Nan Xiao ", "Description": "A collection of 'ggplot2' color palettes inspired by plots in scientific journals, data visualization libraries, science fiction movies, and TV shows.", "License": "GPL (>= 3)", @@ -4250,7 +4258,7 @@ "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Nan Xiao [aut, cre, cph] (ORCID: ), Joshua Cook [ctb], Clara J\u00e9gousse [ctb], Hui Chen [ctb], Miaozhu Li [ctb], iTerm2-Color-Schemes contributors [ctb, cph] (iTerm2-Color-Schemes project), Winston Chang [ctb, cph] (staticimports.R)", + "Author": "Nan Xiao [aut, cre, cph] (ORCID: ), Joshua Cook [ctb], Clara Jégousse [ctb], Hui Chen [ctb], Miaozhu Li [ctb], iTerm2-Color-Schemes contributors [ctb, cph] (iTerm2-Color-Schemes project), Winston Chang [ctb, cph] (staticimports.R)", "Repository": "CRAN" }, "ggsignif": { @@ -4319,14 +4327,14 @@ "NeedsCompilation": "no", "Author": "Claus O. Wilke [aut] (), Brenton M. Wiernik [aut, cre] (, @bmwiernik)", "Maintainer": "Brenton M. Wiernik ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "gh": { "Package": "gh", "Version": "1.5.0", "Source": "Repository", "Title": "'GitHub' 'API'", - "Authors@R": "c( person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = c(\"cre\", \"ctb\")), person(\"Jennifer\", \"Bryan\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"cre\", \"ctb\")), person(\"Jennifer\", \"Bryan\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Minimal client to access the 'GitHub' 'API'.", "License": "MIT + file LICENSE", "URL": "https://gh.r-lib.org/, https://github.com/r-lib/gh#readme", @@ -4362,8 +4370,8 @@ "Language": "en-US", "RoxygenNote": "7.3.2.9000", "NeedsCompilation": "no", - "Author": "G\u00e1bor Cs\u00e1rdi [cre, ctb], Jennifer Bryan [aut], Hadley Wickham [aut], Posit Software, PBC [cph, fnd] (ROR: )", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Gábor Csárdi [cre, ctb], Jennifer Bryan [aut], Hadley Wickham [aut], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "gitcreds": { @@ -4371,7 +4379,7 @@ "Version": "0.1.2", "Source": "Repository", "Title": "Query 'git' Credentials from 'R'", - "Authors@R": "c( person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", "Description": "Query, set, delete credentials from the 'git' credential store. Manage 'GitHub' tokens and other 'git' credentials. This package is to be used by other packages that need to authenticate to 'GitHub' and/or other 'git' repositories.", "License": "MIT + file LICENSE", "URL": "https://gitcreds.r-lib.org/, https://github.com/r-lib/gitcreds", @@ -4396,16 +4404,16 @@ "SystemRequirements": "git", "Config/testthat/edition": "3", "NeedsCompilation": "no", - "Author": "G\u00e1bor Cs\u00e1rdi [aut, cre], RStudio [cph, fnd]", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Gábor Csárdi [aut, cre], RStudio [cph, fnd]", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "glmmTMB": { "Package": "glmmTMB", - "Version": "1.1.13", + "Version": "1.1.14", "Source": "Repository", "Title": "Generalized Linear Mixed Models using Template Model Builder", - "Authors@R": "c(person(\"Mollie\",\"Brooks\", comment=c(ORCID=\"0000-0001-6963-8326\"), role = c(\"aut\", \"cre\"), email = \"mollieebrooks@gmail.com\"), person(\"Ben\",\"Bolker\", role=\"aut\", comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"Kasper\",\"Kristensen\",role=\"aut\"), person(\"Martin\",\"Maechler\", role=\"aut\", comment=c(ORCID=\"0000-0002-8685-9910\")), person(\"Arni\",\"Magnusson\", role=\"aut\", comment=c(ORCID=\"0000-0003-2769-6741\")), person(\"Maeve\",\"McGillycuddy\", role=\"ctb\"), person(\"Hans\",\"Skaug\",role=\"aut\", comment=c(ORCID=\"0000-0003-4235-2592\")), person(\"Anders\",\"Nielsen\", role=\"aut\", comment=c(ORCID=\"0000-0001-9683-9262\")), person(\"Casper\",\"Berg\", role=\"aut\", comment=c(ORCID=\"0000-0002-3812-5269\")), person(\"Koen\",\"van Bentham\", role=\"aut\"), person(\"Nafis\",\"Sadat\",role=\"ctb\", comment=c(ORCID=\"0000-0001-5715-616X\")), person(\"Daniel\",\"L\u00fcdecke\", role=\"ctb\", comment=c(ORCID=\"0000-0002-8895-3206\")), person(\"Russ\",\"Lenth\", role=\"ctb\"), person(\"Joseph\", \"O'Brien\", role = \"ctb\", comment = c(ORCID = \"0000-0001-9851-5077\")), person(\"Charles J.\",\"Geyer\", role=\"ctb\"), person(\"Mikael\",\"Jagan\", role=\"ctb\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Brenton\", \"Wiernik\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9560-6336\")), person(\"Daniel B.\", \"Stouffer\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9436-9674\")), person(\"Michael\", \"Agronah\", role = \"ctb\", comment = c(ORCID = \"0009-0007-2655-4094\")), person(\"Hatice T\u00fcl K\u00fcbra\", \"Akdur\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2144-0518\")), person(\"Daniel\", \"Saban\u00e9s Bov\u00e9\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0176-9239\")), person(\"Nikolas\", \"Krieger\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4581-3545\")) )", + "Authors@R": "c(person(\"Mollie\",\"Brooks\", comment=c(ORCID=\"0000-0001-6963-8326\"), role = c(\"aut\", \"cre\"), email = \"mollieebrooks@gmail.com\"), person(\"Ben\",\"Bolker\", role=\"aut\", comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"Kasper\",\"Kristensen\",role=\"aut\"), person(\"Martin\",\"Maechler\", role=\"aut\", comment=c(ORCID=\"0000-0002-8685-9910\")), person(\"Arni\",\"Magnusson\", role=\"aut\", comment=c(ORCID=\"0000-0003-2769-6741\")), person(\"Maeve\",\"McGillycuddy\", role=\"ctb\"), person(\"Hans\",\"Skaug\",role=\"aut\", comment=c(ORCID=\"0000-0003-4235-2592\")), person(\"Anders\",\"Nielsen\", role=\"aut\", comment=c(ORCID=\"0000-0001-9683-9262\")), person(\"Casper\",\"Berg\", role=\"aut\", comment=c(ORCID=\"0000-0002-3812-5269\")), person(\"Koen\",\"van Bentham\", role=\"aut\"), person(\"Nafis\",\"Sadat\",role=\"ctb\", comment=c(ORCID=\"0000-0001-5715-616X\")), person(\"Daniel\",\"Lüdecke\", role=\"ctb\", comment=c(ORCID=\"0000-0002-8895-3206\")), person(\"Russ\",\"Lenth\", role=\"ctb\"), person(\"Joseph\", \"O'Brien\", role = \"ctb\", comment = c(ORCID = \"0000-0001-9851-5077\")), person(\"Charles J.\",\"Geyer\", role=\"ctb\"), person(\"Mikael\",\"Jagan\", role=\"ctb\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Brenton\", \"Wiernik\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9560-6336\")), person(\"Daniel B.\", \"Stouffer\", role=\"ctb\", comment = c(ORCID = \"0000-0001-9436-9674\")), person(\"Michael\", \"Agronah\", role = \"ctb\", comment = c(ORCID = \"0009-0007-2655-4094\")), person(\"Hatice Tül Kübra\", \"Akdur\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2144-0518\")), person(\"Daniel\", \"Sabanés Bové\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0176-9239\")), person(\"Nikolas\", \"Krieger\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4581-3545\")), person(\"Coralie\", \"Williams\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1312-4953\")) )", "Description": "Fit linear and generalized linear mixed models with various extensions, including zero-inflation. The models are fitted using maximum likelihood estimation via 'TMB' (Template Model Builder). Random effects are assumed to be Gaussian on the scale of the linear predictor and are integrated out using the Laplace approximation. Gradients are calculated using automatic differentiation.", "License": "AGPL-3", "Depends": [ @@ -4419,7 +4427,7 @@ "nlme", "numDeriv", "mgcv", - "reformulas (>= 0.2.0)", + "reformulas (>= 0.4.3.1)", "pbkrtest", "sandwich" ], @@ -4462,7 +4470,8 @@ "ade4", "ape", "gsl", - "lmerTest" + "lmerTest", + "metafor" ], "SystemRequirements": "GNU make", "VignetteBuilder": "knitr, rmarkdown", @@ -4472,7 +4481,7 @@ "NeedsCompilation": "yes", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", - "Author": "Mollie Brooks [aut, cre] (ORCID: ), Ben Bolker [aut] (ORCID: ), Kasper Kristensen [aut], Martin Maechler [aut] (ORCID: ), Arni Magnusson [aut] (ORCID: ), Maeve McGillycuddy [ctb], Hans Skaug [aut] (ORCID: ), Anders Nielsen [aut] (ORCID: ), Casper Berg [aut] (ORCID: ), Koen van Bentham [aut], Nafis Sadat [ctb] (ORCID: ), Daniel L\u00fcdecke [ctb] (ORCID: ), Russ Lenth [ctb], Joseph O'Brien [ctb] (ORCID: ), Charles J. Geyer [ctb], Mikael Jagan [ctb] (ORCID: ), Brenton Wiernik [ctb] (ORCID: ), Daniel B. Stouffer [ctb] (ORCID: ), Michael Agronah [ctb] (ORCID: ), Hatice T\u00fcl K\u00fcbra Akdur [ctb] (ORCID: ), Daniel Saban\u00e9s Bov\u00e9 [ctb] (ORCID: ), Nikolas Krieger [ctb] (ORCID: )", + "Author": "Mollie Brooks [aut, cre] (ORCID: ), Ben Bolker [aut] (ORCID: ), Kasper Kristensen [aut], Martin Maechler [aut] (ORCID: ), Arni Magnusson [aut] (ORCID: ), Maeve McGillycuddy [ctb], Hans Skaug [aut] (ORCID: ), Anders Nielsen [aut] (ORCID: ), Casper Berg [aut] (ORCID: ), Koen van Bentham [aut], Nafis Sadat [ctb] (ORCID: ), Daniel Lüdecke [ctb] (ORCID: ), Russ Lenth [ctb], Joseph O'Brien [ctb] (ORCID: ), Charles J. Geyer [ctb], Mikael Jagan [ctb] (ORCID: ), Brenton Wiernik [ctb] (ORCID: ), Daniel B. Stouffer [ctb] (ORCID: ), Michael Agronah [ctb] (ORCID: ), Hatice Tül Kübra Akdur [ctb] (ORCID: ), Daniel Sabanés Bové [ctb] (ORCID: ), Nikolas Krieger [ctb] (ORCID: ), Coralie Williams [ctb] (ORCID: )", "Maintainer": "Mollie Brooks ", "Repository": "CRAN" }, @@ -4551,7 +4560,7 @@ }, "globals": { "Package": "globals", - "Version": "0.18.0", + "Version": "0.19.1", "Source": "Repository", "Depends": [ "R (>= 3.1.2)" @@ -4569,7 +4578,7 @@ "Encoding": "UTF-8", "URL": "https://globals.futureverse.org, https://github.com/futureverse/globals", "BugReports": "https://github.com/futureverse/globals/issues", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "Henrik Bengtsson [aut, cre, cph], Davis Vaughan [ctb]", "Maintainer": "Henrik Bengtsson ", @@ -4577,16 +4586,16 @@ }, "glue": { "Package": "glue", - "Version": "1.8.0", + "Version": "1.8.1", "Source": "Repository", "Title": "Interpreted String Literals", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "An implementation of interpreted string literals, inspired by Python's Literal String Interpolation and Docstrings and Julia's Triple-Quoted String Literals .", "License": "MIT + file LICENSE", "URL": "https://glue.tidyverse.org/, https://github.com/tidyverse/glue", "BugReports": "https://github.com/tidyverse/glue/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "methods" @@ -4596,7 +4605,6 @@ "DBI (>= 1.2.0)", "dplyr", "knitr", - "magrittr", "rlang", "rmarkdown", "RSQLite", @@ -4609,10 +4617,11 @@ "ByteCompile": "true", "Config/Needs/website": "bench, forcats, ggbeeswarm, ggplot2, R.utils, rprintf, tidyr, tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2026-04-16", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Jim Hester [aut] (), Jennifer Bryan [aut, cre] (), Posit Software, PBC [cph, fnd]", + "Author": "Jim Hester [aut] (ORCID: ), Jennifer Bryan [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, @@ -4771,7 +4780,7 @@ "NeedsCompilation": "yes", "Author": "David Schoch [aut, cre] (ORCID: )", "Maintainer": "David Schoch ", - "Repository": "https://packagemanager.posit.co/cran/__linux__/noble/latest" + "Repository": "CRAN" }, "gridExtra": { "Package": "gridExtra", @@ -4805,7 +4814,7 @@ }, "gridtext": { "Package": "gridtext", - "Version": "0.1.5", + "Version": "0.1.6", "Source": "Repository", "Type": "Package", "Title": "Improved Text Rendering Support for 'Grid' Graphics", @@ -4841,11 +4850,10 @@ ], "Encoding": "UTF-8", "RoxygenNote": "7.1.1", - "SystemRequirements": "C++11", "NeedsCompilation": "yes", - "Author": "Claus O. Wilke [aut] (), Brenton M. Wiernik [aut, cre] (, @bmwiernik)", + "Author": "Claus O. Wilke [aut] (ORCID: ), Brenton M. Wiernik [aut, cre] (ORCID: , Twitter: @bmwiernik)", "Maintainer": "Brenton M. Wiernik ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "gt": { "Package": "gt", @@ -4853,7 +4861,7 @@ "Source": "Repository", "Type": "Package", "Title": "Easily Create Presentation-Ready Display Tables", - "Authors@R": "c( person(\"Richard\", \"Iannone\", , \"rich@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Shannon\", \"Haughton\", , \"shannon.l.haughton@gsk.com\", role = \"aut\"), person(\"Ellis\", \"Hughes\", , \"ellis.h.hughes@gsk.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-0637-4436\")), person(\"Alexandra\", \"Lauer\", , \"alexandralauer1@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-4191-6301\")), person(\"Romain\", \"Fran\u00e7ois\", , \"romain@tada.science\", role = \"aut\"), person(\"JooYoung\", \"Seo\", , \"jseo1005@illinois.edu\", role = \"aut\", comment = c(ORCID = \"0000-0002-4064-6012\")), person(\"Ken\", \"Brevoort\", , \"ken@brevoort.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-4001-8358\")), person(\"Olivier\", \"Roy\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Richard\", \"Iannone\", , \"rich@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Shannon\", \"Haughton\", , \"shannon.l.haughton@gsk.com\", role = \"aut\"), person(\"Ellis\", \"Hughes\", , \"ellis.h.hughes@gsk.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-0637-4436\")), person(\"Alexandra\", \"Lauer\", , \"alexandralauer1@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-4191-6301\")), person(\"Romain\", \"François\", , \"romain@tada.science\", role = \"aut\"), person(\"JooYoung\", \"Seo\", , \"jseo1005@illinois.edu\", role = \"aut\", comment = c(ORCID = \"0000-0002-4064-6012\")), person(\"Ken\", \"Brevoort\", , \"ken@brevoort.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-4001-8358\")), person(\"Olivier\", \"Roy\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Build display tables from tabular data with an easy-to-use set of functions. With its progressive approach, we can construct display tables with a cohesive set of table parts. Table values can be formatted using any of the included formatting functions. Footnotes and cell styles can be precisely added through a location targeting system. The way in which 'gt' handles things for you means that you don't often have to worry about the fine details.", "License": "MIT + file LICENSE", "URL": "https://gt.rstudio.com, https://github.com/rstudio/gt", @@ -4914,10 +4922,9 @@ "LazyData": "true", "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Richard Iannone [aut, cre] (ORCID: ), Joe Cheng [aut], Barret Schloerke [aut] (ORCID: ), Shannon Haughton [aut], Ellis Hughes [aut] (ORCID: ), Alexandra Lauer [aut] (ORCID: ), Romain Fran\u00e7ois [aut], JooYoung Seo [aut] (ORCID: ), Ken Brevoort [aut] (ORCID: ), Olivier Roy [aut], Posit Software, PBC [cph, fnd]", + "Author": "Richard Iannone [aut, cre] (ORCID: ), Joe Cheng [aut], Barret Schloerke [aut] (ORCID: ), Shannon Haughton [aut], Ellis Hughes [aut] (ORCID: ), Alexandra Lauer [aut] (ORCID: ), Romain François [aut], JooYoung Seo [aut] (ORCID: ), Ken Brevoort [aut] (ORCID: ), Olivier Roy [aut], Posit Software, PBC [cph, fnd]", "Maintainer": "Richard Iannone ", - "Repository": "CRAN", - "Date/Publication": "2026-01-22 06:10:50 UTC" + "Repository": "CRAN" }, "gtable": { "Package": "gtable", @@ -5029,6 +5036,7 @@ "Author": "Daniel D. Sjoberg [aut, cre] (ORCID: ), Joseph Larmarange [aut] (ORCID: ), Michael Curry [aut] (ORCID: ), Emily de la Rua [aut] (ORCID: ), Jessica Lavery [aut] (ORCID: ), Karissa Whiting [aut] (ORCID: ), Emily C. Zabor [aut] (ORCID: ), Xing Bai [ctb], Malcolm Barrett [ctb] (ORCID: ), Esther Drill [ctb] (ORCID: ), Jessica Flynn [ctb] (ORCID: ), Margie Hannum [ctb] (ORCID: ), Stephanie Lobaugh [ctb], Shannon Pileggi [ctb] (ORCID: ), Amy Tin [ctb] (ORCID: ), Gustavo Zapata Wainberg [ctb] (ORCID: )", "Maintainer": "Daniel D. Sjoberg ", "RemoteType": "github", + "Remotes": "insightsengineering/cards@main, insightsengineering/cardx@main", "RemoteHost": "api.github.com", "RemoteUsername": "ddsjoberg", "RemoteRepo": "gtsummary", @@ -5118,13 +5126,13 @@ "Config/testthat/edition": "3", "Config/Needs/website": "tidyverse/tidytemplate", "NeedsCompilation": "no", - "Author": "Kirill M\u00fcller [aut, cre] (ORCID: ), Jennifer Bryan [ctb] (ORCID: )", - "Maintainer": "Kirill M\u00fcller ", + "Author": "Kirill Müller [aut, cre] (ORCID: ), Jennifer Bryan [ctb] (ORCID: )", + "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "highr": { "Package": "highr", - "Version": "0.11", + "Version": "0.12", "Source": "Repository", "Type": "Package", "Title": "Syntax Highlighting for R Source Code", @@ -5146,9 +5154,9 @@ "BugReports": "https://github.com/yihui/highr/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Yihui Xie [aut, cre] (), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]", + "Author": "Yihui Xie [aut, cre] (ORCID: ), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, @@ -5158,7 +5166,7 @@ "Source": "Repository", "Title": "Pretty Time of Day", "Date": "2025-10-11", - "Authors@R": "c( person(\"Kirill\", \"M\u00fcller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\"), person(\"Posit Software, PBC\", role = \"fnd\", comment = c(ROR = \"03wc8by49\")) )", + "Authors@R": "c( person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\"), person(\"Posit Software, PBC\", role = \"fnd\", comment = c(ROR = \"03wc8by49\")) )", "Description": "Implements an S3 class for storing and formatting time-of-day values, based on the 'difftime' class.", "License": "MIT + file LICENSE", "URL": "https://hms.tidyverse.org/, https://github.com/tidyverse/hms", @@ -5182,8 +5190,8 @@ "Encoding": "UTF-8", "RoxygenNote": "7.3.3.9000", "NeedsCompilation": "no", - "Author": "Kirill M\u00fcller [aut, cre] (ORCID: ), R Consortium [fnd], Posit Software, PBC [fnd] (ROR: )", - "Maintainer": "Kirill M\u00fcller ", + "Author": "Kirill Müller [aut, cre] (ORCID: ), R Consortium [fnd], Posit Software, PBC [fnd] (ROR: )", + "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "htmltools": { @@ -5264,14 +5272,14 @@ }, "httpuv": { "Package": "httpuv", - "Version": "1.6.16", + "Version": "1.6.17", "Source": "Repository", "Type": "Package", "Title": "HTTP and WebSocket Server Library", - "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit, PBC\", \"fnd\", role = \"cph\"), person(\"Hector\", \"Corrada Bravo\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Andrzej\", \"Krzemienski\", role = \"cph\", comment = \"optional.hpp\"), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library, see src/libuv/AUTHORS file\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file\"), person(\"Niels\", \"Provos\", role = \"cph\", comment = \"libuv subcomponent: tree.h\"), person(\"Internet Systems Consortium, Inc.\", role = \"cph\", comment = \"libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c\"), person(\"Alexander\", \"Chemeris\", role = \"cph\", comment = \"libuv subcomponent: stdint-msvc2008.h (from msinttypes)\"), person(\"Google, Inc.\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Sony Mobile Communcations AB\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Berkeley Software Design Inc.\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Kenneth\", \"MacKay\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016)\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Steve\", \"Reid\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"James\", \"Brown\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"Bob\", \"Trower\", role = \"aut\", comment = \"base64 implementation\"), person(\"Alexander\", \"Peslyak\", role = \"aut\", comment = \"MD5 implementation\"), person(\"Trantor Standard Systems\", role = \"cph\", comment = \"base64 implementation\"), person(\"Igor\", \"Sysoev\", role = \"cph\", comment = \"http-parser\") )", + "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Hector\", \"Corrada Bravo\", role = \"ctb\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\"), person(\"Andrzej\", \"Krzemienski\", role = \"cph\", comment = \"optional.hpp\"), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library, see src/libuv/AUTHORS file\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file\"), person(\"Niels\", \"Provos\", role = \"cph\", comment = \"libuv subcomponent: tree.h\"), person(\"Internet Systems Consortium, Inc.\", role = \"cph\", comment = \"libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c\"), person(\"Alexander\", \"Chemeris\", role = \"cph\", comment = \"libuv subcomponent: stdint-msvc2008.h (from msinttypes)\"), person(\"Google, Inc.\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Sony Mobile Communcations AB\", role = \"cph\", comment = \"libuv subcomponent: pthread-fixes.c\"), person(\"Berkeley Software Design Inc.\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Kenneth\", \"MacKay\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016)\", role = \"cph\", comment = \"libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c\"), person(\"Steve\", \"Reid\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"James\", \"Brown\", role = \"aut\", comment = \"SHA-1 implementation\"), person(\"Bob\", \"Trower\", role = \"aut\", comment = \"base64 implementation\"), person(\"Alexander\", \"Peslyak\", role = \"aut\", comment = \"MD5 implementation\"), person(\"Trantor Standard Systems\", role = \"cph\", comment = \"base64 implementation\"), person(\"Igor\", \"Sysoev\", role = \"cph\", comment = \"http-parser\") )", "Description": "Provides low-level socket and protocol support for handling HTTP and WebSocket requests directly from within R. It is primarily intended as a building block for other packages, rather than making it particularly easy to create complete web applications using httpuv alone. httpuv is built on top of the libuv and http-parser C libraries, both of which were developed by Joyent, Inc. (See LICENSE file for libuv and http-parser license information.)", "License": "GPL (>= 2) | file LICENSE", - "URL": "https://github.com/rstudio/httpuv", + "URL": "https://rstudio.github.io/httpuv/, https://github.com/rstudio/httpuv", "BugReports": "https://github.com/rstudio/httpuv/issues", "Depends": [ "R (>= 2.15.1)" @@ -5287,37 +5295,40 @@ "callr", "curl", "jsonlite", - "testthat", + "testthat (>= 3.0.0)", "websocket" ], "LinkingTo": [ "later", "Rcpp" ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-07-01", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "SystemRequirements": "GNU make, zlib", - "Collate": "'RcppExports.R' 'httpuv.R' 'random_port.R' 'server.R' 'staticServer.R' 'static_paths.R' 'utils.R'", + "Collate": "'RcppExports.R' 'httpuv-package.R' 'httpuv.R' 'random_port.R' 'server.R' 'staticServer.R' 'static_paths.R' 'utils.R'", "NeedsCompilation": "yes", - "Author": "Joe Cheng [aut], Winston Chang [aut, cre], Posit, PBC fnd [cph], Hector Corrada Bravo [ctb], Jeroen Ooms [ctb], Andrzej Krzemienski [cph] (optional.hpp), libuv project contributors [cph] (libuv library, see src/libuv/AUTHORS file), Joyent, Inc. and other Node contributors [cph] (libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file), Niels Provos [cph] (libuv subcomponent: tree.h), Internet Systems Consortium, Inc. [cph] (libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c), Alexander Chemeris [cph] (libuv subcomponent: stdint-msvc2008.h (from msinttypes)), Google, Inc. [cph] (libuv subcomponent: pthread-fixes.c), Sony Mobile Communcations AB [cph] (libuv subcomponent: pthread-fixes.c), Berkeley Software Design Inc. [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Kenneth MacKay [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016) [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Steve Reid [aut] (SHA-1 implementation), James Brown [aut] (SHA-1 implementation), Bob Trower [aut] (base64 implementation), Alexander Peslyak [aut] (MD5 implementation), Trantor Standard Systems [cph] (base64 implementation), Igor Sysoev [cph] (http-parser)", + "Author": "Joe Cheng [aut], Winston Chang [aut, cre], Posit, PBC [cph, fnd] (ROR: ), Hector Corrada Bravo [ctb], Jeroen Ooms [ctb], Andrzej Krzemienski [cph] (optional.hpp), libuv project contributors [cph] (libuv library, see src/libuv/AUTHORS file), Joyent, Inc. and other Node contributors [cph] (libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file), Niels Provos [cph] (libuv subcomponent: tree.h), Internet Systems Consortium, Inc. [cph] (libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c), Alexander Chemeris [cph] (libuv subcomponent: stdint-msvc2008.h (from msinttypes)), Google, Inc. [cph] (libuv subcomponent: pthread-fixes.c), Sony Mobile Communcations AB [cph] (libuv subcomponent: pthread-fixes.c), Berkeley Software Design Inc. [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Kenneth MacKay [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016) [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Steve Reid [aut] (SHA-1 implementation), James Brown [aut] (SHA-1 implementation), Bob Trower [aut] (base64 implementation), Alexander Peslyak [aut] (MD5 implementation), Trantor Standard Systems [cph] (base64 implementation), Igor Sysoev [cph] (http-parser)", "Maintainer": "Winston Chang ", "Repository": "CRAN" }, "httr": { "Package": "httr", - "Version": "1.4.7", + "Version": "1.4.8", "Source": "Repository", "Title": "Tools for Working with URLs and HTTP", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Useful tools for working with HTTP organised by HTTP verbs (GET(), POST(), etc). Configuration functions make it easy to control additional request components (authenticate(), add_headers() and so on).", "License": "MIT + file LICENSE", "URL": "https://httr.r-lib.org/, https://github.com/r-lib/httr", "BugReports": "https://github.com/r-lib/httr/issues", "Depends": [ - "R (>= 3.5)" + "R (>= 3.6)" ], "Imports": [ - "curl (>= 5.0.2)", + "curl (>= 5.1.0)", "jsonlite", "mime", "openssl (>= 0.8)", @@ -5337,9 +5348,9 @@ "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut, cre], Posit, PBC [cph, fnd]", + "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, @@ -5401,7 +5412,7 @@ "NeedsCompilation": "no", "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd], Maximilian Girlich [ctb]", "Maintainer": "Hadley Wickham ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "hunspell": { "Package": "hunspell", @@ -5437,7 +5448,7 @@ "NeedsCompilation": "yes", "Author": "Jeroen Ooms [aut, cre], Authors of libhunspell [cph] (see AUTHORS file)", "Maintainer": "Jeroen Ooms ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "ids": { "Package": "ids", @@ -5468,10 +5479,10 @@ }, "igraph": { "Package": "igraph", - "Version": "2.2.3", + "Version": "2.3.0", "Source": "Repository", "Title": "Network Analysis and Visualization", - "Authors@R": "c( person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Tam\u00e1s\", \"Nepusz\", , \"ntamas@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-1451-338X\")), person(\"Vincent\", \"Traag\", role = \"aut\", comment = c(ORCID = \"0000-0003-3170-3879\")), person(\"Szabolcs\", \"Horv\u00e1t\", , \"szhorvat@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-3100-523X\")), person(\"Fabio\", \"Zanini\", , \"fabio.zanini@unsw.edu.au\", role = \"aut\", comment = c(ORCID = \"0000-0001-7097-8539\")), person(\"Daniel\", \"Noom\", role = \"aut\"), person(\"Kirill\", \"M\u00fcller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Michael\", \"Antonov\", role = \"ctb\"), person(\"Chan Zuckerberg Initiative\", role = \"fnd\", comment = c(ROR = \"02qenvm24\")), person(\"David\", \"Schoch\", , \"david.schoch@cynkra.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-2952-4812\")), person(\"Ma\u00eblle\", \"Salmon\", , \"maelle@cynkra.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-2815-0399\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Tamás\", \"Nepusz\", , \"ntamas@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-1451-338X\")), person(\"Vincent\", \"Traag\", role = \"aut\", comment = c(ORCID = \"0000-0003-3170-3879\")), person(\"Szabolcs\", \"Horvát\", , \"szhorvat@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-3100-523X\")), person(\"Fabio\", \"Zanini\", , \"fabio.zanini@unsw.edu.au\", role = \"aut\", comment = c(ORCID = \"0000-0001-7097-8539\")), person(\"Daniel\", \"Noom\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Michael\", \"Antonov\", role = \"ctb\"), person(\"Chan Zuckerberg Initiative\", role = \"fnd\", comment = c(ROR = \"02qenvm24\")), person(\"David\", \"Schoch\", , \"david.schoch@cynkra.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-2952-4812\")), person(\"Maëlle\", \"Salmon\", , \"maelle@cynkra.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"R Consortium\", role = \"fnd\", comment = c(ROR = \"01z833950\")) )", "Description": "Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.", "License": "GPL (>= 2)", "URL": "https://r.igraph.org/, https://igraph.org/, https://igraph.discourse.group/", @@ -5519,8 +5530,9 @@ "Config/build/compilation-database": "false", "Config/build/never-clean": "true", "Config/comment/compilation-database": "Generate manually with pkgload:::generate_db() for faster pkgload::load_all()", - "Config/Needs/build": "r-lib/roxygen2, devtools, irlba, pkgconfig, igraph/igraph.r2cdocs, moodymudskipper/devtag", + "Config/Needs/build": "devtools, irlba, pkgconfig", "Config/Needs/coverage": "covr", + "Config/Needs/roxygen2": "r-lib/roxygen2, igraph/igraph.r2cdocs, moodymudskipper/devtag", "Config/Needs/website": "here, readr, tibble, xmlparsedata, xml2", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", @@ -5529,9 +5541,9 @@ "RoxygenNote": "7.3.3.9000", "SystemRequirements": "libxml2 (optional), glpk (>= 4.57, optional)", "NeedsCompilation": "yes", - "Author": "G\u00e1bor Cs\u00e1rdi [aut] (ORCID: ), Tam\u00e1s Nepusz [aut] (ORCID: ), Vincent Traag [aut] (ORCID: ), Szabolcs Horv\u00e1t [aut] (ORCID: ), Fabio Zanini [aut] (ORCID: ), Daniel Noom [aut], Kirill M\u00fcller [aut, cre] (ORCID: ), Michael Antonov [ctb], Chan Zuckerberg Initiative [fnd] (ROR: ), David Schoch [aut] (ORCID: ), Ma\u00eblle Salmon [aut] (ORCID: )", - "Maintainer": "Kirill M\u00fcller ", - "Repository": "https://packagemanager.posit.co/cran/__linux__/noble/latest" + "Author": "Gábor Csárdi [aut] (ORCID: ), Tamás Nepusz [aut] (ORCID: ), Vincent Traag [aut] (ORCID: ), Szabolcs Horvát [aut] (ORCID: ), Fabio Zanini [aut] (ORCID: ), Daniel Noom [aut], Kirill Müller [aut, cre] (ORCID: ), Michael Antonov [ctb], Chan Zuckerberg Initiative [fnd] (ROR: ), David Schoch [aut] (ORCID: ), Maëlle Salmon [aut] (ORCID: ), R Consortium [fnd] (ROR: )", + "Maintainer": "Kirill Müller ", + "Repository": "CRAN" }, "ini": { "Package": "ini", @@ -5556,12 +5568,12 @@ }, "insight": { "Package": "insight", - "Version": "1.4.4", + "Version": "1.5.0", "Source": "Repository", "Type": "Package", "Title": "Easy Access to Model Information for Various Model Objects", - "Authors@R": "c(person(given = \"Daniel\", family = \"L\u00fcdecke\", role = c(\"aut\", \"cre\"), email = \"officialeasystats@gmail.com\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(given = \"Dominique\", family = \"Makowski\", role = c(\"aut\", \"ctb\"), email = \"dom.makowski@gmail.com\", comment = c(ORCID = \"0000-0001-5375-9967\")), person(given = \"Indrajeet\", family = \"Patil\", role = c(\"aut\", \"ctb\"), email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(given = \"Philip\", family = \"Waggoner\", role = c(\"aut\", \"ctb\"), email = \"philip.waggoner@gmail.com\", comment = c(ORCID = \"0000-0002-7825-7573\")), person(given = \"Mattan S.\", family = \"Ben-Shachar\", role = c(\"aut\", \"ctb\"), email = \"matanshm@post.bgu.ac.il\", comment = c(ORCID = \"0000-0002-4287-4801\")), person(given = \"Brenton M.\", family = \"Wiernik\", role = c(\"aut\", \"ctb\"), email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\")), person(given = \"Vincent\", family = \"Arel-Bundock\", email = \"vincent.arel-bundock@umontreal.ca\", role = c(\"aut\", \"ctb\"), comment = c(ORCID = \"0000-0003-2042-7063\")), person(given = \"Etienne\", family = \"Bacher\", email = \"etienne.bacher@protonmail.com\", role = c(\"aut\", \"ctb\"), comment = c(ORCID = \"0000-0002-9271-5075\")), person(given = \"Alex\", family = \"Hayes\", role = c(\"rev\"), email = \"alexpghayes@gmail.com\", comment = c(ORCID = \"0000-0002-4985-5160\")), person(given = \"Grant\", family = \"McDermott\", role = c(\"ctb\"), email = \"grantmcd@uoregon.edu\", comment = c(ORCID = \"0000-0001-7883-8573\")), person(given = \"R\u00e9mi\", family = \"Th\u00e9riault\", role = \"ctb\", email = \"remi.theriault@mail.mcgill.ca\", comment = c(ORCID = \"0000-0003-4315-6788\")), person(given = \"Alex\", family = \"Reinhart\", role = \"ctb\", email = \"areinhar@stat.cmu.edu\", comment = c(ORCID = \"0000-0002-6658-514X\")))", - "Maintainer": "Daniel L\u00fcdecke ", + "Authors@R": "c(person(given = \"Daniel\", family = \"Lüdecke\", role = c(\"aut\", \"cre\"), email = \"officialeasystats@gmail.com\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(given = \"Dominique\", family = \"Makowski\", role = c(\"aut\", \"ctb\"), email = \"dom.makowski@gmail.com\", comment = c(ORCID = \"0000-0001-5375-9967\")), person(given = \"Indrajeet\", family = \"Patil\", role = c(\"aut\", \"ctb\"), email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(given = \"Philip\", family = \"Waggoner\", role = c(\"aut\", \"ctb\"), email = \"philip.waggoner@gmail.com\", comment = c(ORCID = \"0000-0002-7825-7573\")), person(given = \"Mattan S.\", family = \"Ben-Shachar\", role = c(\"aut\", \"ctb\"), email = \"matanshm@post.bgu.ac.il\", comment = c(ORCID = \"0000-0002-4287-4801\")), person(given = \"Brenton M.\", family = \"Wiernik\", role = c(\"aut\", \"ctb\"), email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\")), person(given = \"Vincent\", family = \"Arel-Bundock\", email = \"vincent.arel-bundock@umontreal.ca\", role = c(\"aut\", \"ctb\"), comment = c(ORCID = \"0000-0003-2042-7063\")), person(given = \"Etienne\", family = \"Bacher\", email = \"etienne.bacher@protonmail.com\", role = c(\"aut\", \"ctb\"), comment = c(ORCID = \"0000-0002-9271-5075\")), person(given = \"Alex\", family = \"Hayes\", role = c(\"rev\"), email = \"alexpghayes@gmail.com\", comment = c(ORCID = \"0000-0002-4985-5160\")), person(given = \"Grant\", family = \"McDermott\", role = c(\"ctb\"), email = \"grantmcd@uoregon.edu\", comment = c(ORCID = \"0000-0001-7883-8573\")), person(given = \"Rémi\", family = \"Thériault\", role = \"ctb\", email = \"remi.theriault@mail.mcgill.ca\", comment = c(ORCID = \"0000-0003-4315-6788\")), person(given = \"Alex\", family = \"Reinhart\", role = \"ctb\", email = \"areinhar@stat.cmu.edu\", comment = c(ORCID = \"0000-0002-6658-514X\")))", + "Maintainer": "Daniel Lüdecke ", "Description": "A tool to provide an easy, intuitive and consistent access to information contained in various R models, like model formulas, model terms, information about random effects, data that was used to fit the model or data from response variables. 'insight' mainly revolves around two types of functions: Functions that find (the names of) information, starting with 'find_', and functions that get the underlying data, starting with 'get_'. The package has a consistent syntax and works with many different model objects, where otherwise functions to access these information are missing.", "License": "GPL-3", "URL": "https://easystats.github.io/insight/", @@ -5678,6 +5690,8 @@ "quantreg", "Rcpp", "RcppEigen", + "reformulas", + "recipes", "rmarkdown", "rms", "robustbase", @@ -5685,6 +5699,7 @@ "rpart", "rstanarm (>= 2.21.1)", "rstantools (>= 2.1.0)", + "rstpm2", "rstudioapi", "RWiener", "sandwich", @@ -5698,6 +5713,7 @@ "survival", "svylme", "testthat", + "tidymodels", "tinytable (>= 0.13.0)", "TMB", "truncreg", @@ -5705,7 +5721,8 @@ "tweedie", "VGAM", "WeightIt", - "withr" + "withr", + "workflows" ], "VignetteBuilder": "knitr", "Encoding": "UTF-8", @@ -5716,8 +5733,8 @@ "Config/Needs/website": "easystats/easystatstemplate", "Config/Needs/check": "stan-dev/cmdstanr", "NeedsCompilation": "no", - "Author": "Daniel L\u00fcdecke [aut, cre] (ORCID: ), Dominique Makowski [aut, ctb] (ORCID: ), Indrajeet Patil [aut, ctb] (ORCID: ), Philip Waggoner [aut, ctb] (ORCID: ), Mattan S. Ben-Shachar [aut, ctb] (ORCID: ), Brenton M. Wiernik [aut, ctb] (ORCID: ), Vincent Arel-Bundock [aut, ctb] (ORCID: ), Etienne Bacher [aut, ctb] (ORCID: ), Alex Hayes [rev] (ORCID: ), Grant McDermott [ctb] (ORCID: ), R\u00e9mi Th\u00e9riault [ctb] (ORCID: ), Alex Reinhart [ctb] (ORCID: )", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Author": "Daniel Lüdecke [aut, cre] (ORCID: ), Dominique Makowski [aut, ctb] (ORCID: ), Indrajeet Patil [aut, ctb] (ORCID: ), Philip Waggoner [aut, ctb] (ORCID: ), Mattan S. Ben-Shachar [aut, ctb] (ORCID: ), Brenton M. Wiernik [aut, ctb] (ORCID: ), Vincent Arel-Bundock [aut, ctb] (ORCID: ), Etienne Bacher [aut, ctb] (ORCID: ), Alex Hayes [rev] (ORCID: ), Grant McDermott [ctb] (ORCID: ), Rémi Thériault [ctb] (ORCID: ), Alex Reinhart [ctb] (ORCID: )", + "Repository": "CRAN" }, "isoband": { "Package": "isoband", @@ -5759,7 +5776,7 @@ "NeedsCompilation": "yes", "Author": "Hadley Wickham [aut] (ORCID: ), Claus O. Wilke [aut] (Original author, ORCID: ), Thomas Lin Pedersen [aut, cre] (ORCID: ), Posit, PBC [cph, fnd] (ROR: )", "Maintainer": "Thomas Lin Pedersen ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "iterators": { "Package": "iterators", @@ -5786,12 +5803,12 @@ }, "jose": { "Package": "jose", - "Version": "1.2.1", + "Version": "2.0.0", "Source": "Repository", "Type": "Package", "Title": "JavaScript Object Signing and Encryption", "Authors@R": "person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\"))", - "Description": "Read and write JSON Web Keys (JWK, rfc7517), generate and verify JSON Web Signatures (JWS, rfc7515) and encode/decode JSON Web Tokens (JWT, rfc7519) . These standards provide modern signing and encryption formats that are natively supported by browsers via the JavaScript WebCryptoAPI , and used by services like OAuth 2.0, LetsEncrypt, and Github Apps.", + "Description": "Read and write JSON Web Keys (JWK, rfc7517), generate and verify JSON Web Signatures (JWS, rfc7515) and encode/decode JSON Web Tokens (JWT, rfc7519) . These standards provide modern signing and encryption formats that are natively supported by browsers via the JavaScript WebCryptoAPI , and used by services like OAuth 2.0, LetsEncrypt, and Github Apps.", "License": "MIT + file LICENSE", "URL": "https://r-lib.r-universe.dev/jose", "BugReports": "https://github.com/r-lib/jose/issues", @@ -5801,7 +5818,7 @@ "Imports": [ "jsonlite" ], - "RoxygenNote": "7.1.2", + "RoxygenNote": "7.3.3.9000", "VignetteBuilder": "knitr", "Suggests": [ "spelling", @@ -5812,7 +5829,7 @@ "Encoding": "UTF-8", "Language": "en-US", "NeedsCompilation": "no", - "Author": "Jeroen Ooms [aut, cre] ()", + "Author": "Jeroen Ooms [aut, cre] (ORCID: )", "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, @@ -5833,8 +5850,7 @@ "URL": "https://www.rforge.net/jpeg/", "BugReports": "https://github.com/s-u/jpeg/issues", "NeedsCompilation": "yes", - "Repository": "https://packagemanager.posit.co/cran/latest", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "jquerylib": { "Package": "jquerylib", @@ -5918,7 +5934,7 @@ "Source": "Repository", "Type": "Package", "Title": "Construct Complex Table with 'kable' and Pipe Syntax", - "Authors@R": "c( person('Hao', 'Zhu', email = 'haozhu233@gmail.com', role = c('aut', 'cre'), comment = c(ORCID = '0000-0002-3386-6076')), person('Thomas', 'Travison', role = 'ctb'), person('Timothy', 'Tsai', role = 'ctb'), person('Will', 'Beasley', email = 'wibeasley@hotmail.com', role = 'ctb'), person('Yihui', 'Xie', email = 'xie@yihui.name', role = 'ctb'), person('GuangChuang', 'Yu', email = 'guangchuangyu@gmail.com', role = 'ctb'), person('St\u00e9phane', 'Laurent', role = 'ctb'), person('Rob', 'Shepherd', role = 'ctb'), person('Yoni', 'Sidi', role = 'ctb'), person('Brian', 'Salzer', role = 'ctb'), person('George', 'Gui', role = 'ctb'), person('Yeliang', 'Fan', role = 'ctb'), person('Duncan', 'Murdoch', role = 'ctb'), person('Vincent', 'Arel-Bundock', role = 'ctb'), person('Bill', 'Evans', role = 'ctb') )", + "Authors@R": "c( person('Hao', 'Zhu', email = 'haozhu233@gmail.com', role = c('aut', 'cre'), comment = c(ORCID = '0000-0002-3386-6076')), person('Thomas', 'Travison', role = 'ctb'), person('Timothy', 'Tsai', role = 'ctb'), person('Will', 'Beasley', email = 'wibeasley@hotmail.com', role = 'ctb'), person('Yihui', 'Xie', email = 'xie@yihui.name', role = 'ctb'), person('GuangChuang', 'Yu', email = 'guangchuangyu@gmail.com', role = 'ctb'), person('Stéphane', 'Laurent', role = 'ctb'), person('Rob', 'Shepherd', role = 'ctb'), person('Yoni', 'Sidi', role = 'ctb'), person('Brian', 'Salzer', role = 'ctb'), person('George', 'Gui', role = 'ctb'), person('Yeliang', 'Fan', role = 'ctb'), person('Duncan', 'Murdoch', role = 'ctb'), person('Vincent', 'Arel-Bundock', role = 'ctb'), person('Bill', 'Evans', role = 'ctb') )", "Description": "Build complex HTML or 'LaTeX' tables using 'kable()' from 'knitr' and the piping syntax from 'magrittr'. Function 'kable()' is a light weight table generator coming from 'knitr'. This package simplifies the way to manipulate the HTML or 'LaTeX' codes generated by 'kable()' and allows users to construct complex tables and customize styles using a readable syntax.", "License": "MIT + file LICENSE", "URL": "http://haozhu233.github.io/kableExtra/, https://github.com/haozhu233/kableExtra", @@ -5957,40 +5973,17 @@ "RoxygenNote": "7.2.3", "Language": "en-US", "NeedsCompilation": "no", - "Author": "Hao Zhu [aut, cre] (), Thomas Travison [ctb], Timothy Tsai [ctb], Will Beasley [ctb], Yihui Xie [ctb], GuangChuang Yu [ctb], St\u00e9phane Laurent [ctb], Rob Shepherd [ctb], Yoni Sidi [ctb], Brian Salzer [ctb], George Gui [ctb], Yeliang Fan [ctb], Duncan Murdoch [ctb], Vincent Arel-Bundock [ctb], Bill Evans [ctb]", + "Author": "Hao Zhu [aut, cre] (), Thomas Travison [ctb], Timothy Tsai [ctb], Will Beasley [ctb], Yihui Xie [ctb], GuangChuang Yu [ctb], Stéphane Laurent [ctb], Rob Shepherd [ctb], Yoni Sidi [ctb], Brian Salzer [ctb], George Gui [ctb], Yeliang Fan [ctb], Duncan Murdoch [ctb], Vincent Arel-Bundock [ctb], Bill Evans [ctb]", "Maintainer": "Hao Zhu ", "Repository": "CRAN" }, - "km.ci": { - "Package": "km.ci", - "Version": "0.5-6", - "Source": "Repository", - "Type": "Package", - "Title": "Confidence Intervals for the Kaplan-Meier Estimator", - "Date": "2022-04-04", - "Author": "Ralf Strobl ", - "Maintainer": "Tobias Verbeke ", - "Depends": [ - "R (>= 3.5.0)" - ], - "Imports": [ - "stats", - "survival" - ], - "Description": "Computes various confidence intervals for the Kaplan-Meier estimator, namely: Peto's CI, Rothman CI, CI's based on Greenwood's variance, Thomas and Grunkemeier CI and the simultaneous confidence bands by Nair and Hall and Wellner.", - "License": "GPL (>= 2)", - "Encoding": "UTF-8", - "Repository": "CRAN", - "RoxygenNote": "7.1.2", - "NeedsCompilation": "no" - }, "knitr": { "Package": "knitr", "Version": "1.51", "Source": "Repository", "Type": "Package", "Title": "A General-Purpose Package for Dynamic Report Generation in R", - "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Abhraneel\", \"Sarma\", role = \"ctb\"), person(\"Adam\", \"Vogt\", role = \"ctb\"), person(\"Alastair\", \"Andrew\", role = \"ctb\"), person(\"Alex\", \"Zvoleff\", role = \"ctb\"), person(\"Amar\", \"Al-Zubaidi\", role = \"ctb\"), person(\"Andre\", \"Simon\", role = \"ctb\", comment = \"the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de\"), person(\"Aron\", \"Atkins\", role = \"ctb\"), person(\"Aaron\", \"Wolen\", role = \"ctb\"), person(\"Ashley\", \"Manton\", role = \"ctb\"), person(\"Atsushi\", \"Yasumoto\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8335-495X\")), person(\"Ben\", \"Baumer\", role = \"ctb\"), person(\"Brian\", \"Diggs\", role = \"ctb\"), person(\"Brian\", \"Zhang\", role = \"ctb\"), person(\"Bulat\", \"Yapparov\", role = \"ctb\"), person(\"Cassio\", \"Pereira\", role = \"ctb\"), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person(\"David\", \"Hall\", role = \"ctb\"), person(\"David\", \"Hugh-Jones\", role = \"ctb\"), person(\"David\", \"Robinson\", role = \"ctb\"), person(\"Doug\", \"Hemken\", role = \"ctb\"), person(\"Duncan\", \"Murdoch\", role = \"ctb\"), person(\"Elio\", \"Campitelli\", role = \"ctb\"), person(\"Ellis\", \"Hughes\", role = \"ctb\"), person(\"Emily\", \"Riederer\", role = \"ctb\"), person(\"Fabian\", \"Hirschmann\", role = \"ctb\"), person(\"Fitch\", \"Simeon\", role = \"ctb\"), person(\"Forest\", \"Fang\", role = \"ctb\"), person(c(\"Frank\", \"E\", \"Harrell\", \"Jr\"), role = \"ctb\", comment = \"the Sweavel package at inst/misc/Sweavel.sty\"), person(\"Garrick\", \"Aden-Buie\", role = \"ctb\"), person(\"Gregoire\", \"Detrez\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Hao\", \"Zhu\", role = \"ctb\"), person(\"Heewon\", \"Jeon\", role = \"ctb\"), person(\"Henrik\", \"Bengtsson\", role = \"ctb\"), person(\"Hiroaki\", \"Yutani\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Hodges\", \"Daniel\", role = \"ctb\"), person(\"Jacob\", \"Bien\", role = \"ctb\"), person(\"Jake\", \"Burkhead\", role = \"ctb\"), person(\"James\", \"Manton\", role = \"ctb\"), person(\"Jared\", \"Lander\", role = \"ctb\"), person(\"Jason\", \"Punyon\", role = \"ctb\"), person(\"Javier\", \"Luraschi\", role = \"ctb\"), person(\"Jeff\", \"Arnold\", role = \"ctb\"), person(\"Jenny\", \"Bryan\", role = \"ctb\"), person(\"Jeremy\", \"Ashkenas\", role = c(\"ctb\", \"cph\"), comment = \"the CSS file at inst/misc/docco-classic.css\"), person(\"Jeremy\", \"Stephens\", role = \"ctb\"), person(\"Jim\", \"Hester\", role = \"ctb\"), person(\"Joe\", \"Cheng\", role = \"ctb\"), person(\"Johannes\", \"Ranke\", role = \"ctb\"), person(\"John\", \"Honaker\", role = \"ctb\"), person(\"John\", \"Muschelli\", role = \"ctb\"), person(\"Jonathan\", \"Keane\", role = \"ctb\"), person(\"JJ\", \"Allaire\", role = \"ctb\"), person(\"Johan\", \"Toloe\", role = \"ctb\"), person(\"Jonathan\", \"Sidi\", role = \"ctb\"), person(\"Joseph\", \"Larmarange\", role = \"ctb\"), person(\"Julien\", \"Barnier\", role = \"ctb\"), person(\"Kaiyin\", \"Zhong\", role = \"ctb\"), person(\"Kamil\", \"Slowikowski\", role = \"ctb\"), person(\"Karl\", \"Forner\", role = \"ctb\"), person(c(\"Kevin\", \"K.\"), \"Smith\", role = \"ctb\"), person(\"Kirill\", \"Mueller\", role = \"ctb\"), person(\"Kohske\", \"Takahashi\", role = \"ctb\"), person(\"Lorenz\", \"Walthert\", role = \"ctb\"), person(\"Lucas\", \"Gallindo\", role = \"ctb\"), person(\"Marius\", \"Hofert\", role = \"ctb\"), person(\"Martin\", \"Modr\u00e1k\", role = \"ctb\"), person(\"Michael\", \"Chirico\", role = \"ctb\"), person(\"Michael\", \"Friendly\", role = \"ctb\"), person(\"Michal\", \"Bojanowski\", role = \"ctb\"), person(\"Michel\", \"Kuhlmann\", role = \"ctb\"), person(\"Miller\", \"Patrick\", role = \"ctb\"), person(\"Nacho\", \"Caballero\", role = \"ctb\"), person(\"Nick\", \"Salkowski\", role = \"ctb\"), person(\"Niels Richard\", \"Hansen\", role = \"ctb\"), person(\"Noam\", \"Ross\", role = \"ctb\"), person(\"Obada\", \"Mahdi\", role = \"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role = \"ctb\", comment=c(ORCID = \"0000-0002-9101-3362\")), person(\"Pedro\", \"Faria\", role = \"ctb\"), person(\"Qiang\", \"Li\", role = \"ctb\"), person(\"Ramnath\", \"Vaidyanathan\", role = \"ctb\"), person(\"Richard\", \"Cotton\", role = \"ctb\"), person(\"Robert\", \"Krzyzanowski\", role = \"ctb\"), person(\"Rodrigo\", \"Copetti\", role = \"ctb\"), person(\"Romain\", \"Francois\", role = \"ctb\"), person(\"Ruaridh\", \"Williamson\", role = \"ctb\"), person(\"Sagiru\", \"Mati\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1413-3974\")), person(\"Scott\", \"Kostyshak\", role = \"ctb\"), person(\"Sebastian\", \"Meyer\", role = \"ctb\"), person(\"Sietse\", \"Brouwer\", role = \"ctb\"), person(c(\"Simon\", \"de\"), \"Bernard\", role = \"ctb\"), person(\"Sylvain\", \"Rousseau\", role = \"ctb\"), person(\"Taiyun\", \"Wei\", role = \"ctb\"), person(\"Thibaut\", \"Assus\", role = \"ctb\"), person(\"Thibaut\", \"Lamadon\", role = \"ctb\"), person(\"Thomas\", \"Leeper\", role = \"ctb\"), person(\"Tim\", \"Mastny\", role = \"ctb\"), person(\"Tom\", \"Torsney-Weir\", role = \"ctb\"), person(\"Trevor\", \"Davis\", role = \"ctb\"), person(\"Viktoras\", \"Veitas\", role = \"ctb\"), person(\"Weicheng\", \"Zhu\", role = \"ctb\"), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Zachary\", \"Foster\", role = \"ctb\"), person(\"Zhian N.\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Abhraneel\", \"Sarma\", role = \"ctb\"), person(\"Adam\", \"Vogt\", role = \"ctb\"), person(\"Alastair\", \"Andrew\", role = \"ctb\"), person(\"Alex\", \"Zvoleff\", role = \"ctb\"), person(\"Amar\", \"Al-Zubaidi\", role = \"ctb\"), person(\"Andre\", \"Simon\", role = \"ctb\", comment = \"the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de\"), person(\"Aron\", \"Atkins\", role = \"ctb\"), person(\"Aaron\", \"Wolen\", role = \"ctb\"), person(\"Ashley\", \"Manton\", role = \"ctb\"), person(\"Atsushi\", \"Yasumoto\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8335-495X\")), person(\"Ben\", \"Baumer\", role = \"ctb\"), person(\"Brian\", \"Diggs\", role = \"ctb\"), person(\"Brian\", \"Zhang\", role = \"ctb\"), person(\"Bulat\", \"Yapparov\", role = \"ctb\"), person(\"Cassio\", \"Pereira\", role = \"ctb\"), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person(\"David\", \"Hall\", role = \"ctb\"), person(\"David\", \"Hugh-Jones\", role = \"ctb\"), person(\"David\", \"Robinson\", role = \"ctb\"), person(\"Doug\", \"Hemken\", role = \"ctb\"), person(\"Duncan\", \"Murdoch\", role = \"ctb\"), person(\"Elio\", \"Campitelli\", role = \"ctb\"), person(\"Ellis\", \"Hughes\", role = \"ctb\"), person(\"Emily\", \"Riederer\", role = \"ctb\"), person(\"Fabian\", \"Hirschmann\", role = \"ctb\"), person(\"Fitch\", \"Simeon\", role = \"ctb\"), person(\"Forest\", \"Fang\", role = \"ctb\"), person(c(\"Frank\", \"E\", \"Harrell\", \"Jr\"), role = \"ctb\", comment = \"the Sweavel package at inst/misc/Sweavel.sty\"), person(\"Garrick\", \"Aden-Buie\", role = \"ctb\"), person(\"Gregoire\", \"Detrez\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Hao\", \"Zhu\", role = \"ctb\"), person(\"Heewon\", \"Jeon\", role = \"ctb\"), person(\"Henrik\", \"Bengtsson\", role = \"ctb\"), person(\"Hiroaki\", \"Yutani\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Hodges\", \"Daniel\", role = \"ctb\"), person(\"Jacob\", \"Bien\", role = \"ctb\"), person(\"Jake\", \"Burkhead\", role = \"ctb\"), person(\"James\", \"Manton\", role = \"ctb\"), person(\"Jared\", \"Lander\", role = \"ctb\"), person(\"Jason\", \"Punyon\", role = \"ctb\"), person(\"Javier\", \"Luraschi\", role = \"ctb\"), person(\"Jeff\", \"Arnold\", role = \"ctb\"), person(\"Jenny\", \"Bryan\", role = \"ctb\"), person(\"Jeremy\", \"Ashkenas\", role = c(\"ctb\", \"cph\"), comment = \"the CSS file at inst/misc/docco-classic.css\"), person(\"Jeremy\", \"Stephens\", role = \"ctb\"), person(\"Jim\", \"Hester\", role = \"ctb\"), person(\"Joe\", \"Cheng\", role = \"ctb\"), person(\"Johannes\", \"Ranke\", role = \"ctb\"), person(\"John\", \"Honaker\", role = \"ctb\"), person(\"John\", \"Muschelli\", role = \"ctb\"), person(\"Jonathan\", \"Keane\", role = \"ctb\"), person(\"JJ\", \"Allaire\", role = \"ctb\"), person(\"Johan\", \"Toloe\", role = \"ctb\"), person(\"Jonathan\", \"Sidi\", role = \"ctb\"), person(\"Joseph\", \"Larmarange\", role = \"ctb\"), person(\"Julien\", \"Barnier\", role = \"ctb\"), person(\"Kaiyin\", \"Zhong\", role = \"ctb\"), person(\"Kamil\", \"Slowikowski\", role = \"ctb\"), person(\"Karl\", \"Forner\", role = \"ctb\"), person(c(\"Kevin\", \"K.\"), \"Smith\", role = \"ctb\"), person(\"Kirill\", \"Mueller\", role = \"ctb\"), person(\"Kohske\", \"Takahashi\", role = \"ctb\"), person(\"Lorenz\", \"Walthert\", role = \"ctb\"), person(\"Lucas\", \"Gallindo\", role = \"ctb\"), person(\"Marius\", \"Hofert\", role = \"ctb\"), person(\"Martin\", \"Modrák\", role = \"ctb\"), person(\"Michael\", \"Chirico\", role = \"ctb\"), person(\"Michael\", \"Friendly\", role = \"ctb\"), person(\"Michal\", \"Bojanowski\", role = \"ctb\"), person(\"Michel\", \"Kuhlmann\", role = \"ctb\"), person(\"Miller\", \"Patrick\", role = \"ctb\"), person(\"Nacho\", \"Caballero\", role = \"ctb\"), person(\"Nick\", \"Salkowski\", role = \"ctb\"), person(\"Niels Richard\", \"Hansen\", role = \"ctb\"), person(\"Noam\", \"Ross\", role = \"ctb\"), person(\"Obada\", \"Mahdi\", role = \"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role = \"ctb\", comment=c(ORCID = \"0000-0002-9101-3362\")), person(\"Pedro\", \"Faria\", role = \"ctb\"), person(\"Qiang\", \"Li\", role = \"ctb\"), person(\"Ramnath\", \"Vaidyanathan\", role = \"ctb\"), person(\"Richard\", \"Cotton\", role = \"ctb\"), person(\"Robert\", \"Krzyzanowski\", role = \"ctb\"), person(\"Rodrigo\", \"Copetti\", role = \"ctb\"), person(\"Romain\", \"Francois\", role = \"ctb\"), person(\"Ruaridh\", \"Williamson\", role = \"ctb\"), person(\"Sagiru\", \"Mati\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1413-3974\")), person(\"Scott\", \"Kostyshak\", role = \"ctb\"), person(\"Sebastian\", \"Meyer\", role = \"ctb\"), person(\"Sietse\", \"Brouwer\", role = \"ctb\"), person(c(\"Simon\", \"de\"), \"Bernard\", role = \"ctb\"), person(\"Sylvain\", \"Rousseau\", role = \"ctb\"), person(\"Taiyun\", \"Wei\", role = \"ctb\"), person(\"Thibaut\", \"Assus\", role = \"ctb\"), person(\"Thibaut\", \"Lamadon\", role = \"ctb\"), person(\"Thomas\", \"Leeper\", role = \"ctb\"), person(\"Tim\", \"Mastny\", role = \"ctb\"), person(\"Tom\", \"Torsney-Weir\", role = \"ctb\"), person(\"Trevor\", \"Davis\", role = \"ctb\"), person(\"Viktoras\", \"Veitas\", role = \"ctb\"), person(\"Weicheng\", \"Zhu\", role = \"ctb\"), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Zachary\", \"Foster\", role = \"ctb\"), person(\"Zhian N.\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.", "Depends": [ "R (>= 3.6.0)" @@ -6045,9 +6038,9 @@ "Collate": "'block.R' 'cache.R' 'citation.R' 'hooks-html.R' 'plot.R' 'utils.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks.R' 'otel.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'", "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Yihui Xie [aut, cre] (ORCID: , URL: https://yihui.org), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (ORCID: ), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin Modr\u00e1k [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky [ctb] (ORCID: ), Pedro Faria [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Rodrigo Copetti [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Sagiru Mati [ctb] (ORCID: ), Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. Kamvar [ctb] (ORCID: ), Posit Software, PBC [cph, fnd]", + "Author": "Yihui Xie [aut, cre] (ORCID: , URL: https://yihui.org), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (ORCID: ), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin Modrák [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky [ctb] (ORCID: ), Pedro Faria [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Rodrigo Copetti [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Sagiru Mati [ctb] (ORCID: ), Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. Kamvar [ctb] (ORCID: ), Posit Software, PBC [cph, fnd]", "Maintainer": "Yihui Xie ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "labeling": { "Package": "labeling", @@ -6075,7 +6068,7 @@ "Type": "Package", "Title": "Manipulating Labelled Data", "Maintainer": "Joseph Larmarange ", - "Authors@R": "c( person(\"Joseph\", \"Larmarange\", email = \"joseph@larmarange.net\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-7097-700X\")), person(\"Daniel\", \"Ludecke\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Michal\", \"Bojanowski\", role = \"ctb\"), person(\"Fran\u00e7ois\", \"Briatte\", role = \"ctb\") )", + "Authors@R": "c( person(\"Joseph\", \"Larmarange\", email = \"joseph@larmarange.net\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-7097-700X\")), person(\"Daniel\", \"Ludecke\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Michal\", \"Bojanowski\", role = \"ctb\"), person(\"François\", \"Briatte\", role = \"ctb\") )", "Description": "Work with labelled data imported from 'SPSS' or 'Stata' with 'haven' or 'foreign'. This package provides useful functions to deal with \"haven_labelled\" and \"haven_labelled_spss\" classes introduced by 'haven' package.", "License": "GPL (>= 3)", "Encoding": "UTF-8", @@ -6116,27 +6109,31 @@ "Config/testthat/edition": "3", "Config/Needs/check": "memisc", "NeedsCompilation": "no", - "Author": "Joseph Larmarange [aut, cre] (ORCID: ), Daniel Ludecke [ctb], Hadley Wickham [ctb], Michal Bojanowski [ctb], Fran\u00e7ois Briatte [ctb]", + "Author": "Joseph Larmarange [aut, cre] (ORCID: ), Daniel Ludecke [ctb], Hadley Wickham [ctb], Michal Bojanowski [ctb], François Briatte [ctb]", "Repository": "CRAN" }, "later": { "Package": "later", - "Version": "1.4.4", + "Version": "1.4.8", "Source": "Repository", "Type": "Package", "Title": "Utilities for Scheduling Functions to Execute Later with Event Loops", - "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\"), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Charlie\", \"Gao\", , \"charlie.gao@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0750-061X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\"), person(\"Evan\", \"Nemerson\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\") )", + "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Charlie\", \"Gao\", , \"charlie.gao@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-0750-061X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\"), person(\"Evan\", \"Nemerson\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\") )", "Description": "Executes arbitrary R or C functions some time after the current time, after the R execution stack has emptied. The functions are scheduled in an event loop.", "License": "MIT + file LICENSE", "URL": "https://later.r-lib.org, https://github.com/r-lib/later", "BugReports": "https://github.com/r-lib/later/issues", + "Depends": [ + "R (>= 3.5)" + ], "Imports": [ - "Rcpp (>= 0.12.9)", + "Rcpp (>= 1.0.10)", "rlang" ], "Suggests": [ "knitr", "nanonext", + "promises", "rmarkdown", "testthat (>= 3.0.0)" ], @@ -6144,13 +6141,14 @@ "Rcpp" ], "VignetteBuilder": "knitr", + "Config/build/compilation-database": "true", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Config/usethis/last-upkeep": "2025-07-18", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Winston Chang [aut], Joe Cheng [aut], Charlie Gao [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: ), Marcus Geelnard [ctb, cph] (TinyCThread library, https://tinycthread.github.io/), Evan Nemerson [ctb, cph] (TinyCThread library, https://tinycthread.github.io/)", + "Author": "Winston Chang [aut] (ORCID: ), Joe Cheng [aut], Charlie Gao [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: ), Marcus Geelnard [ctb, cph] (TinyCThread library, https://tinycthread.github.io/), Evan Nemerson [ctb, cph] (TinyCThread library, https://tinycthread.github.io/)", "Maintainer": "Charlie Gao ", "Repository": "CRAN" }, @@ -6160,7 +6158,7 @@ "Source": "Repository", "Type": "Package", "Title": "Use LaTeX Expressions in Plots", - "Date": "2022-11-27", + "Date": "2024-07-05", "Authors@R": "person(\"Stefano\", \"Meschiari\", email=\"stefano.meschiari@gmail.com\", role=c(\"aut\", \"cre\"))", "Description": "Parses and converts LaTeX math formulas to R's plotmath expressions, used to enter mathematical formulas and symbols to be rendered as text, axis labels, etc. throughout R's plotting system.", "License": "MIT + file LICENSE", @@ -6183,19 +6181,18 @@ "dplyr" ], "VignetteBuilder": "knitr", - "RoxygenNote": "7.1.2", + "RoxygenNote": "7.2.3", "Language": "en-US", "NeedsCompilation": "no", "Author": "Stefano Meschiari [aut, cre]", "Maintainer": "Stefano Meschiari ", - "Repository": "CRAN", - "Date/Publication": "2026-01-09 09:00:29 UTC" + "Repository": "CRAN" }, "lattice": { "Package": "lattice", - "Version": "0.22-7", + "Version": "0.22-9", "Source": "Repository", - "Date": "2025-03-31", + "Date": "2026-02-03", "Priority": "recommended", "Title": "Trellis Graphics for R", "Authors@R": "c(person(\"Deepayan\", \"Sarkar\", role = c(\"aut\", \"cre\"), email = \"deepayan.sarkar@r-project.org\", comment = c(ORCID = \"0000-0003-4107-1553\")), person(\"Felix\", \"Andrews\", role = \"ctb\"), person(\"Kevin\", \"Wright\", role = \"ctb\", comment = \"documentation\"), person(\"Neil\", \"Klepeis\", role = \"ctb\"), person(\"Johan\", \"Larsson\", role = \"ctb\", comment = \"miscellaneous improvements\"), person(\"Zhijian (Jason)\", \"Wen\", role = \"cph\", comment = \"filled contour code\"), person(\"Paul\", \"Murrell\", role = \"ctb\", email = \"paul@stat.auckland.ac.nz\"), person(\"Stefan\", \"Eng\", role = \"ctb\", comment = \"violin plot improvements\"), person(\"Achim\", \"Zeileis\", role = \"ctb\", comment = \"modern colors\"), person(\"Alexandre\", \"Courtiol\", role = \"ctb\", comment = \"generics for larrows, lpolygon, lrect and lsegments\") )", @@ -6226,7 +6223,7 @@ "URL": "https://lattice.r-forge.r-project.org/", "BugReports": "https://github.com/deepayan/lattice/issues", "NeedsCompilation": "yes", - "Author": "Deepayan Sarkar [aut, cre] (), Felix Andrews [ctb], Kevin Wright [ctb] (documentation), Neil Klepeis [ctb], Johan Larsson [ctb] (miscellaneous improvements), Zhijian (Jason) Wen [cph] (filled contour code), Paul Murrell [ctb], Stefan Eng [ctb] (violin plot improvements), Achim Zeileis [ctb] (modern colors), Alexandre Courtiol [ctb] (generics for larrows, lpolygon, lrect and lsegments)", + "Author": "Deepayan Sarkar [aut, cre] (ORCID: ), Felix Andrews [ctb], Kevin Wright [ctb] (documentation), Neil Klepeis [ctb], Johan Larsson [ctb] (miscellaneous improvements), Zhijian (Jason) Wen [cph] (filled contour code), Paul Murrell [ctb], Stefan Eng [ctb] (violin plot improvements), Achim Zeileis [ctb] (modern colors), Alexandre Courtiol [ctb] (generics for larrows, lpolygon, lrect and lsegments)", "Maintainer": "Deepayan Sarkar ", "Repository": "CRAN" }, @@ -6238,10 +6235,12 @@ "Description": "An alternative approach to non-standard evaluation using formulas. Provides a full implementation of LISP style 'quasiquotation', making it easier to generate code with other code.", "Authors@R": "c( person(\"Hadley\", \"Wickham\", ,\"hadley@rstudio.com\", c(\"aut\", \"cre\")), person(\"RStudio\", role = \"cph\") )", "License": "GPL-3", - "LazyData": "true", "Depends": [ "R (>= 3.1.0)" ], + "Imports": [ + "rlang" + ], "Suggests": [ "knitr", "rmarkdown (>= 0.2.65)", @@ -6249,15 +6248,12 @@ "covr" ], "VignetteBuilder": "knitr", - "RoxygenNote": "6.1.1", + "RoxygenNote": "7.3.3", + "Config/build/compilation-database": "true", "NeedsCompilation": "yes", "Author": "Hadley Wickham [aut, cre], RStudio [cph]", "Maintainer": "Hadley Wickham ", - "Repository": "CRAN", - "Imports": [ - "rlang" - ], - "Date": "2026-04-04" + "Repository": "CRAN" }, "lifecycle": { "Package": "lifecycle", @@ -6274,29 +6270,28 @@ ], "Imports": [ "cli (>= 3.4.0)", - "glue", "rlang (>= 1.1.0)" ], "Suggests": [ "covr", - "crayon", "knitr", - "lintr", + "lintr (>= 3.1.0)", "rmarkdown", "testthat (>= 3.0.1)", "tibble", "tidyverse", "tools", "vctrs", - "withr" + "withr", + "xml2" ], "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate, usethis", "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.2.1", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut] (), Posit Software, PBC [cph, fnd]", + "Author": "Lionel Henry [aut, cre], Hadley Wickham [aut] (ORCID: ), Posit Software, PBC [cph, fnd]", "Maintainer": "Lionel Henry ", "Repository": "CRAN" }, @@ -6354,11 +6349,11 @@ "NeedsCompilation": "no", "Author": "Jim Hester [aut], Florent Angly [aut] (GitHub: fangly), Russ Hyde [aut], Michael Chirico [aut, cre] (ORCID: ), Kun Ren [aut], Alexander Rosenstock [aut] (GitHub: AshesITR), Indrajeet Patil [aut] (ORCID: ), Hugo Gruson [aut] (ORCID: )", "Maintainer": "Michael Chirico ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "listenv": { "Package": "listenv", - "Version": "0.10.0", + "Version": "0.10.1", "Source": "Repository", "Depends": [ "R (>= 3.1.2)" @@ -6377,6 +6372,8 @@ "URL": "https://listenv.futureverse.org, https://github.com/futureverse/listenv", "BugReports": "https://github.com/futureverse/listenv/issues", "RoxygenNote": "7.3.3", + "Encoding": "UTF-8", + "Language": "en-US", "NeedsCompilation": "no", "Author": "Henrik Bengtsson [aut, cre, cph]", "Maintainer": "Henrik Bengtsson ", @@ -6416,74 +6413,76 @@ }, "lme4": { "Package": "lme4", - "Version": "1.1-38", + "Version": "2.0-1", "Source": "Repository", "Title": "Linear Mixed-Effects Models using 'Eigen' and S4", - "Authors@R": "c( person(\"Douglas\",\"Bates\", role=\"aut\", comment=c(ORCID=\"0000-0001-8316-9503\")), person(\"Martin\",\"Maechler\", role=\"aut\", comment=c(ORCID=\"0000-0002-8685-9910\")), person(\"Ben\",\"Bolker\",email=\"bbolker+lme4@gmail.com\", role=c(\"aut\",\"cre\"), comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"Steven\",\"Walker\",role=\"aut\", comment=c(ORCID=\"0000-0002-4394-9078\")), person(\"Rune Haubo Bojesen\",\"Christensen\", role=\"ctb\", comment=c(ORCID=\"0000-0002-4494-3399\")), person(\"Henrik\",\"Singmann\", role=\"ctb\", comment=c(ORCID=\"0000-0002-4842-3657\")), person(\"Bin\", \"Dai\", role=\"ctb\"), person(\"Fabian\", \"Scheipl\", role=\"ctb\", comment=c(ORCID=\"0000-0001-8172-3603\")), person(\"Gabor\", \"Grothendieck\", role=\"ctb\"), person(\"Peter\", \"Green\", role=\"ctb\", comment=c(ORCID=\"0000-0002-0238-9852\")), person(\"John\", \"Fox\", role=\"ctb\"), person(\"Alexander\", \"Bauer\", role=\"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role=c(\"ctb\",\"cph\"), comment=c(ORCID=\"0000-0002-9101-3362\", \"shared copyright on simulate.formula\")), person(\"Emi\", \"Tanaka\", role = \"ctb\", comment = c(ORCID=\"0000-0002-1455-259X\")), person(\"Mikael\", \"Jagan\", role = \"ctb\", comment = c(ORCID=\"0000-0002-3542-2938\")), person(\"Ross D.\", \"Boylan\", email=\"ross.boylan@ucsf.edu\", role=(\"ctb\"), comment = c(ORCID=\"0009-0003-4123-8090\")), person(\"Anna\", \"Ly\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0210-0342\")) )", - "Description": "Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' \"glue\".", + "Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = \"aut\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Ben\", \"Bolker\", role = c(\"cre\", \"aut\"), email = \"bbolker+lme4@gmail.com\", comment = c(ORCID = \"0000-0002-2127-0443\")), person(\"Steven\", \"Walker\", role = \"aut\", comment = c(ORCID = \"0000-0002-4394-9078\")), person(\"Rune Haubo Bojesen\", \"Christensen\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4494-3399\")), person(\"Henrik\", \"Singmann\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4842-3657\")), person(\"Bin\", \"Dai\", role = \"ctb\"), person(\"Fabian\", \"Scheipl\", role = \"ctb\", comment = c(ORCID = \"0000-0001-8172-3603\")), person(\"Gabor\", \"Grothendieck\", role = \"ctb\"), person(\"Peter\", \"Green\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0238-9852\")), person(\"John\", \"Fox\", role = \"ctb\"), person(\"Alexander\", \"Bauer\", role = \"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role = c(\"ctb\", \"cph\"), comment = c(ORCID = \"0000-0002-9101-3362\", \"shared copyright on simulate.formula\")), person(\"Emi\", \"Tanaka\", role = \"ctb\", comment = c(ORCID = \"0000-0002-1455-259X\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Ross D.\", \"Boylan\", role = \"ctb\", comment = c(ORCID = \"0009-0003-4123-8090\")), person(\"Anna\", \"Ly\", role = \"aut\", comment = c(ORCID = \"0000-0002-0210-0342\")))", + "Description": "Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' \"glue\".", "Depends": [ - "R (>= 3.6.0)", + "R (>= 3.6)", "Matrix", "methods", "stats" ], "LinkingTo": [ + "Matrix (>= 1.5-0)", "Rcpp (>= 0.10.5)", - "RcppEigen (>= 0.3.3.9.4)", - "Matrix (>= 1.5-0)" + "RcppEigen (>= 0.3.3.9.4)" ], "Imports": [ + "MASS", + "Rdpack", + "boot", "graphics", "grid", - "splines", - "utils", - "parallel", - "MASS", "lattice", - "boot", - "nlme (>= 3.1-123)", "minqa (>= 1.1.15)", + "nlme (>= 3.1-123)", "nloptr (>= 1.0.4)", - "reformulas (>= 0.3.0)", + "parallel", + "reformulas (>= 0.4.3.1)", "rlang", - "Rdpack" + "splines", + "utils" ], - "RdMacros": "Rdpack", "Suggests": [ - "knitr", - "rmarkdown", + "HSAUR3", "MEMSS", - "testthat (>= 0.8.1)", + "car", + "dfoptim", + "gamm4", "ggplot2", + "glmmTMB", + "knitr", + "merDeriv", + "mgcv", "mlmRev", + "numDeriv", "optimx (>= 2013.8.6)", - "gamm4", "pbkrtest", - "HSAUR3", - "numDeriv", - "car", - "dfoptim", - "mgcv", - "statmod", + "rmarkdown", "rr2", "semEff", - "tibble", - "merDeriv" + "statmod", + "testthat (>= 0.8.1)", + "tibble" ], "Enhances": [ "DHARMa", "performance" ], + "RdMacros": "Rdpack", "VignetteBuilder": "knitr", "LazyData": "yes", "License": "GPL (>= 2)", "URL": "https://github.com/lme4/lme4/", "BugReports": "https://github.com/lme4/lme4/issues", "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Douglas Bates [aut] (ORCID: ), Martin Maechler [aut] (ORCID: ), Ben Bolker [aut, cre] (ORCID: ), Steven Walker [aut] (ORCID: ), Rune Haubo Bojesen Christensen [ctb] (ORCID: ), Henrik Singmann [ctb] (ORCID: ), Bin Dai [ctb], Fabian Scheipl [ctb] (ORCID: ), Gabor Grothendieck [ctb], Peter Green [ctb] (ORCID: ), John Fox [ctb], Alexander Bauer [ctb], Pavel N. Krivitsky [ctb, cph] (ORCID: , shared copyright on simulate.formula), Emi Tanaka [ctb] (ORCID: ), Mikael Jagan [ctb] (ORCID: ), Ross D. Boylan [ctb] (ORCID: ), Anna Ly [ctb] (ORCID: )", + "Author": "Douglas Bates [aut] (ORCID: ), Martin Maechler [aut] (ORCID: ), Ben Bolker [cre, aut] (ORCID: ), Steven Walker [aut] (ORCID: ), Rune Haubo Bojesen Christensen [ctb] (ORCID: ), Henrik Singmann [ctb] (ORCID: ), Bin Dai [ctb], Fabian Scheipl [ctb] (ORCID: ), Gabor Grothendieck [ctb], Peter Green [ctb] (ORCID: ), John Fox [ctb], Alexander Bauer [ctb], Pavel N. Krivitsky [ctb, cph] (ORCID: , shared copyright on simulate.formula), Emi Tanaka [ctb] (ORCID: ), Mikael Jagan [aut] (ORCID: ), Ross D. Boylan [ctb] (ORCID: ), Anna Ly [aut] (ORCID: )", "Maintainer": "Ben Bolker ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "lmtest": { "Package": "lmtest", @@ -6519,14 +6518,14 @@ }, "lubridate": { "Package": "lubridate", - "Version": "1.9.4", + "Version": "1.9.5", "Source": "Repository", "Type": "Package", "Title": "Make Dealing with Dates a Little Easier", "Authors@R": "c( person(\"Vitalie\", \"Spinu\", , \"spinuvit@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Garrett\", \"Grolemund\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Davis\", \"Vaughan\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Imanuel\", \"Costigan\", role = \"ctb\"), person(\"Jason\", \"Law\", role = \"ctb\"), person(\"Doug\", \"Mitarotonda\", role = \"ctb\"), person(\"Joseph\", \"Larmarange\", role = \"ctb\"), person(\"Jonathan\", \"Boiser\", role = \"ctb\"), person(\"Chel Hee\", \"Lee\", role = \"ctb\") )", "Maintainer": "Vitalie Spinu ", "Description": "Functions to work with date-times and time-spans: fast and user friendly parsing of date-time data, extraction and updating of components of a date-time (years, months, days, hours, minutes, and seconds), algebraic manipulation on date-time and time-span objects. The 'lubridate' package has a consistent and memorable syntax that makes working with dates easy and fun.", - "License": "GPL (>= 2)", + "License": "MIT + file LICENSE", "URL": "https://lubridate.tidyverse.org, https://github.com/tidyverse/lubridate", "BugReports": "https://github.com/tidyverse/lubridate/issues", "Depends": [ @@ -6535,7 +6534,7 @@ ], "Imports": [ "generics", - "timechange (>= 0.3.0)" + "timechange (>= 0.4.0)" ], "Suggests": [ "covr", @@ -6556,8 +6555,8 @@ "Config/testthat/edition": "3", "Encoding": "UTF-8", "LazyData": "true", - "RoxygenNote": "7.2.3", - "SystemRequirements": "C++11, A system with zoneinfo data (e.g. /usr/share/zoneinfo). On Windows the zoneinfo included with R is used.", + "RoxygenNote": "7.3.3", + "SystemRequirements": "A system with zoneinfo data (e.g. /usr/share/zoneinfo). On Windows the zoneinfo included with R is used.", "Collate": "'Dates.r' 'POSIXt.r' 'util.r' 'parse.r' 'timespans.r' 'intervals.r' 'difftimes.r' 'durations.r' 'periods.r' 'accessors-date.R' 'accessors-day.r' 'accessors-dst.r' 'accessors-hour.r' 'accessors-minute.r' 'accessors-month.r' 'accessors-quarter.r' 'accessors-second.r' 'accessors-tz.r' 'accessors-week.r' 'accessors-year.r' 'am-pm.r' 'time-zones.r' 'numeric.r' 'coercion.r' 'constants.r' 'cyclic_encoding.r' 'data.r' 'decimal-dates.r' 'deprecated.r' 'format_ISO8601.r' 'guess.r' 'hidden.r' 'instants.r' 'leap-years.r' 'ops-addition.r' 'ops-compare.r' 'ops-division.r' 'ops-integer-division.r' 'ops-m+.r' 'ops-modulo.r' 'ops-multiplication.r' 'ops-subtraction.r' 'package.r' 'pretty.r' 'round.r' 'stamp.r' 'tzdir.R' 'update.r' 'vctrs.R' 'zzz.R'", "NeedsCompilation": "yes", "Author": "Vitalie Spinu [aut, cre], Garrett Grolemund [aut], Hadley Wickham [aut], Davis Vaughan [ctb], Ian Lyttle [ctb], Imanuel Costigan [ctb], Jason Law [ctb], Doug Mitarotonda [ctb], Joseph Larmarange [ctb], Jonathan Boiser [ctb], Chel Hee Lee [ctb]", @@ -6592,8 +6591,7 @@ "NeedsCompilation": "yes", "Author": "Stefan Milton Bache [aut, cph] (Original author and creator of magrittr), Hadley Wickham [aut], Lionel Henry [cre], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Lionel Henry ", - "Repository": "CRAN", - "Date/Publication": "2026-04-04 08:00:02 UTC" + "Repository": "CRAN" }, "markdown": { "Package": "markdown", @@ -6660,7 +6658,7 @@ "Version": "2.0.1", "Source": "Repository", "Title": "'Memoisation' of Functions", - "Authors@R": "c(person(given = \"Hadley\", family = \"Wickham\", role = \"aut\", email = \"hadley@rstudio.com\"), person(given = \"Jim\", family = \"Hester\", role = \"aut\"), person(given = \"Winston\", family = \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@rstudio.com\"), person(given = \"Kirill\", family = \"M\u00fcller\", role = \"aut\", email = \"krlmlr+r@mailbox.org\"), person(given = \"Daniel\", family = \"Cook\", role = \"aut\", email = \"danielecook@gmail.com\"), person(given = \"Mark\", family = \"Edmondson\", role = \"ctb\", email = \"r@sunholo.com\"))", + "Authors@R": "c(person(given = \"Hadley\", family = \"Wickham\", role = \"aut\", email = \"hadley@rstudio.com\"), person(given = \"Jim\", family = \"Hester\", role = \"aut\"), person(given = \"Winston\", family = \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@rstudio.com\"), person(given = \"Kirill\", family = \"Müller\", role = \"aut\", email = \"krlmlr+r@mailbox.org\"), person(given = \"Daniel\", family = \"Cook\", role = \"aut\", email = \"danielecook@gmail.com\"), person(given = \"Mark\", family = \"Edmondson\", role = \"ctb\", email = \"r@sunholo.com\"))", "Description": "Cache the results of a function so that when you call it again with the same arguments it returns the previously computed value.", "License": "MIT + file LICENSE", "URL": "https://memoise.r-lib.org, https://github.com/r-lib/memoise", @@ -6681,7 +6679,7 @@ "Encoding": "UTF-8", "RoxygenNote": "7.1.2", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut], Jim Hester [aut], Winston Chang [aut, cre], Kirill M\u00fcller [aut], Daniel Cook [aut], Mark Edmondson [ctb]", + "Author": "Hadley Wickham [aut], Jim Hester [aut], Winston Chang [aut, cre], Kirill Müller [aut], Daniel Cook [aut], Mark Edmondson [ctb]", "Maintainer": "Winston Chang ", "Repository": "CRAN" }, @@ -6716,8 +6714,7 @@ "NeedsCompilation": "yes", "Author": "Simon Wood [aut, cre]", "Maintainer": "Simon Wood ", - "Repository": "https://packagemanager.posit.co/cran/latest", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "microbenchmark": { "Package": "microbenchmark", @@ -6873,10 +6870,10 @@ }, "mvtnorm": { "Package": "mvtnorm", - "Version": "1.3-3", + "Version": "1.3-7", "Source": "Repository", "Title": "Multivariate Normal and t Distributions", - "Date": "2025-01-09", + "Date": "2026-04-14", "Authors@R": "c(person(\"Alan\", \"Genz\", role = \"aut\"), person(\"Frank\", \"Bretz\", role = \"aut\"), person(\"Tetsuhisa\", \"Miwa\", role = \"aut\"), person(\"Xuefei\", \"Mi\", role = \"aut\"), person(\"Friedrich\", \"Leisch\", role = \"ctb\"), person(\"Fabian\", \"Scheipl\", role = \"ctb\"), person(\"Bjoern\", \"Bornkamp\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6294-8185\")), person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")))", "Description": "Computes multivariate normal and t probabilities, quantiles, random deviates, and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae parameterised by Cholesky factors of covariance or precision matrices are implemented for interval-censored and exact data, or a mix thereof. Score functions for these log-likelihoods are available. A class representing multiple lower triangular matrices and corresponding methods are part of this package.", "Imports": [ @@ -6887,23 +6884,24 @@ ], "Suggests": [ "qrng", - "numDeriv" + "numDeriv", + "bibtex" ], "License": "GPL-2", "URL": "http://mvtnorm.R-forge.R-project.org", "NeedsCompilation": "yes", - "Author": "Alan Genz [aut], Frank Bretz [aut], Tetsuhisa Miwa [aut], Xuefei Mi [aut], Friedrich Leisch [ctb], Fabian Scheipl [ctb], Bjoern Bornkamp [ctb] (), Martin Maechler [ctb] (), Torsten Hothorn [aut, cre] ()", + "Author": "Alan Genz [aut], Frank Bretz [aut], Tetsuhisa Miwa [aut], Xuefei Mi [aut], Friedrich Leisch [ctb], Fabian Scheipl [ctb], Bjoern Bornkamp [ctb] (ORCID: ), Martin Maechler [ctb] (ORCID: ), Torsten Hothorn [aut, cre] (ORCID: )", "Maintainer": "Torsten Hothorn ", "Repository": "CRAN" }, "nlme": { "Package": "nlme", - "Version": "3.1-168", + "Version": "3.1-169", "Source": "Repository", - "Date": "2025-03-31", + "Date": "2026-03-27", "Priority": "recommended", "Title": "Linear and Nonlinear Mixed Effects Models", - "Authors@R": "c(person(\"Jos\u00e9\", \"Pinheiro\", role = \"aut\", comment = \"S version\"), person(\"Douglas\", \"Bates\", role = \"aut\", comment = \"up to 2007\"), person(\"Saikat\", \"DebRoy\", role = \"ctb\", comment = \"up to 2002\"), person(\"Deepayan\", \"Sarkar\", role = \"ctb\", comment = \"up to 2005\"), person(\"EISPACK authors\", role = \"ctb\", comment = \"src/rs.f\"), person(\"Siem\", \"Heisterkamp\", role = \"ctb\", comment = \"Author fixed sigma\"), person(\"Bert\", \"Van Willigen\",role = \"ctb\", comment = \"Programmer fixed sigma\"), person(\"Johannes\", \"Ranke\", role = \"ctb\", comment = \"varConstProp()\"), person(\"R Core Team\", email = \"R-core@R-project.org\", role = c(\"aut\", \"cre\"), comment = c(ROR = \"02zz1nj61\")))", + "Authors@R": "c(person(\"José\", \"Pinheiro\", role = \"aut\", comment = \"S version\"), person(\"Douglas\", \"Bates\", role = \"aut\", comment = \"up to 2007\"), person(\"Saikat\", \"DebRoy\", role = \"ctb\", comment = \"up to 2002\"), person(\"Deepayan\", \"Sarkar\", role = \"ctb\", comment = \"up to 2005\"), person(\"EISPACK authors\", role = \"ctb\", comment = \"src/rs.f\"), person(\"Siem\", \"Heisterkamp\", role = \"ctb\", comment = \"Author fixed sigma\"), person(\"Bert\", \"Van Willigen\",role = \"ctb\", comment = \"Programmer fixed sigma\"), person(\"Johannes\", \"Ranke\", role = \"ctb\", comment = \"varConstProp()\"), person(\"R Core Team\", email = \"R-core@R-project.org\", role = c(\"aut\", \"cre\"), comment = c(ROR = \"02zz1nj61\")))", "Contact": "see 'MailingList'", "Description": "Fit and compare Gaussian linear and nonlinear mixed-effects models.", "Depends": [ @@ -6926,7 +6924,7 @@ "MailingList": "R-help@r-project.org", "URL": "https://svn.r-project.org/R-packages/trunk/nlme/", "NeedsCompilation": "yes", - "Author": "Jos\u00e9 Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre] (02zz1nj61)", + "Author": "José Pinheiro [aut] (S version), Douglas Bates [aut] (up to 2007), Saikat DebRoy [ctb] (up to 2002), Deepayan Sarkar [ctb] (up to 2005), EISPACK authors [ctb] (src/rs.f), Siem Heisterkamp [ctb] (Author fixed sigma), Bert Van Willigen [ctb] (Programmer fixed sigma), Johannes Ranke [ctb] (varConstProp()), R Core Team [aut, cre] (ROR: )", "Maintainer": "R Core Team ", "Repository": "CRAN" }, @@ -7020,7 +7018,7 @@ }, "olsrr": { "Package": "olsrr", - "Version": "0.6.1", + "Version": "0.7.0", "Source": "Repository", "Type": "Package", "Title": "Tools for Building OLS Regression Models", @@ -7054,7 +7052,7 @@ "Encoding": "UTF-8", "LazyData": "true", "VignetteBuilder": "knitr", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "NeedsCompilation": "no", "Author": "Aravind Hebbali [aut, cre]", @@ -7063,7 +7061,7 @@ }, "openssl": { "Package": "openssl", - "Version": "2.3.4", + "Version": "2.4.0", "Source": "Repository", "Type": "Package", "Title": "Toolkit for Encryption, Signatures and Certificates Based on OpenSSL", @@ -7099,7 +7097,7 @@ "Version": "0.2.0", "Source": "Repository", "Title": "OpenTelemetry R API", - "Authors@R": "person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\"))", + "Authors@R": "person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\"))", "Description": "High-quality, ubiquitous, and portable telemetry to enable effective observability. OpenTelemetry is a collection of tools, APIs, and SDKs used to instrument, generate, collect, and export telemetry data (metrics, logs, and traces) for analysis in order to understand your software's performance and behavior. This package implements the OpenTelemetry API: . Use this package as a dependency if you want to instrument your R package for OpenTelemetry.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", @@ -7126,8 +7124,8 @@ "Additional_repositories": "https://github.com/r-lib/otelsdk/releases/download/devel", "BugReports": "https://github.com/r-lib/otel/issues", "NeedsCompilation": "no", - "Author": "G\u00e1bor Cs\u00e1rdi [aut, cre]", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Gábor Csárdi [aut, cre]", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "packrat": { @@ -7166,6 +7164,68 @@ "Maintainer": "Aron Atkins ", "Repository": "CRAN" }, + "pak": { + "Package": "pak", + "Version": "0.9.5.9000", + "Source": "GitHub", + "Title": "Another Approach to Package Installation", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Winston\", \"Chang\", role = \"ctb\", comment = \"R6, callr, processx\"), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\"), comment = \"callr, processx\"), person(\"Hadley\", \"Wickham\", role = c(\"ctb\", \"cph\"), comment = \"cli, curl, pkgbuild, yaml\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\", comment = \"curl, jsonlite\"), person(\"Maëlle\", \"Salmon\", role = \"ctb\", comment = \"desc, pkgsearch\"), person(\"Duncan\", \"Temple Lang\", role = \"ctb\", comment = \"jsonlite\"), person(\"Lloyd\", \"Hilaiel\", role = \"cph\", comment = \"jsonlite\"), person(\"Alec\", \"Wong\", role = \"ctb\", comment = \"keyring\"), person(\"Michel Berkelaar and lpSolve authors\", role = \"ctb\", comment = \"lpSolve\"), person(\"R Consortium\", role = \"fnd\", comment = \"pkgsearch\"), person(\"Jay\", \"Loden\", role = \"ctb\", comment = \"ps\"), person(\"Dave\", \"Daeschler\", role = \"ctb\", comment = \"ps\"), person(\"Giampaolo\", \"Rodola\", role = \"ctb\", comment = \"ps\"), person(\"Shawn\", \"Garbett\", role = \"ctb\", comment = \"yaml\"), person(\"Jeremy\", \"Stephens\", role = \"ctb\", comment = \"yaml\"), person(\"Kirill\", \"Simonov\", role = \"ctb\", comment = \"yaml\"), person(\"Yihui\", \"Xie\", role = \"ctb\", comment = \"yaml\"), person(\"Zhuoer\", \"Dong\", role = \"ctb\", comment = \"yaml\"), person(\"Jeffrey\", \"Horner\", role = \"ctb\", comment = \"yaml\"), person(\"Will\", \"Beasley\", role = \"ctb\", comment = \"yaml\"), person(\"Brendan\", \"O'Connor\", role = \"ctb\", comment = \"yaml\"), person(\"Gregory\", \"Warnes\", role = \"ctb\", comment = \"yaml\"), person(\"Michael\", \"Quinn\", role = \"ctb\", comment = \"yaml\"), person(\"Zhian\", \"Kamvar\", role = \"ctb\", comment = \"yaml\"), person(\"Charlie\", \"Gao\", role = \"ctb\", comment = \"yaml\"), person(\"Kuba\", \"Podgórski\", role = \"ctb\", comment = \"zip\"), person(\"Rich\", \"Geldreich\", role = \"ctb\", comment = \"zip\") )", + "Description": "The goal of 'pak' is to make package installation faster and more reliable. In particular, it performs all HTTP operations in parallel, so metadata resolution and package downloads are fast. Metadata and package files are cached on the local disk as well. 'pak' has a dependency solver, so it finds version conflicts before performing the installation. This version of 'pak' supports CRAN, 'Bioconductor' and 'GitHub' packages as well.", + "License": "GPL-3", + "URL": "https://pak.r-lib.org/, https://github.com/r-lib/pak", + "BugReports": "https://github.com/r-lib/pak/issues", + "Depends": [ + "R (>= 3.5)" + ], + "Imports": [ + "tools", + "utils" + ], + "Suggests": [ + "callr (>= 3.7.0)", + "cli (>= 3.2.0)", + "covr", + "curl (>= 4.3.2)", + "desc (>= 1.4.1)", + "filelock (>= 1.0.2)", + "gitcreds", + "glue (>= 1.6.2)", + "jsonlite (>= 1.8.0)", + "keyring (>= 1.4.0)", + "pingr", + "pkgbuild (>= 1.4.2)", + "pkgcache (>= 2.2.4)", + "pkgdepends (>= 0.9.0)", + "pkgload", + "pkgsearch (>= 3.1.0)", + "processx (>= 3.8.1)", + "ps (>= 1.6.0)", + "rstudioapi", + "testthat (>= 3.2.0)", + "webfakes", + "withr", + "yaml" + ], + "Biarch": "true", + "ByteCompile": "true", + "Config/build/extra-sources": "configure*", + "Config/needs/dependencies": "callr, cli, curl, desc, filelock, jsonlite, keyring, lpSolve, pkgbuild, pkgcache, pkgdepends, pkgsearch, processx, ps, yaml", + "Config/Needs/website": "r-lib/asciicast, rmarkdown, roxygen2, tidyverse/tidytemplate", + "Config/Needs/deploy": "cli, curl, desc, gitcreds, glue@1.6.2, gaborcsardi/jsonlite, processx, R6@2.5.1", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-05-13", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "RemoteType": "github", + "RemoteHost": "api.github.com", + "RemoteRepo": "pak", + "RemoteUsername": "r-lib", + "RemoteRef": "HEAD", + "RemoteSha": "b206d59965f8b963176457cfc1dfa63a948330e3", + "NeedsCompilation": "yes", + "Author": "Gábor Csárdi [aut, cre], Jim Hester [aut], Posit Software, PBC [cph, fnd] (ROR: ), Winston Chang [ctb] (R6, callr, processx), Ascent Digital Services [cph, fnd] (callr, processx), Hadley Wickham [ctb, cph] (cli, curl, pkgbuild, yaml), Jeroen Ooms [ctb] (curl, jsonlite), Maëlle Salmon [ctb] (desc, pkgsearch), Duncan Temple Lang [ctb] (jsonlite), Lloyd Hilaiel [cph] (jsonlite), Alec Wong [ctb] (keyring), Michel Berkelaar and lpSolve authors [ctb] (lpSolve), R Consortium [fnd] (pkgsearch), Jay Loden [ctb] (ps), Dave Daeschler [ctb] (ps), Giampaolo Rodola [ctb] (ps), Shawn Garbett [ctb] (yaml), Jeremy Stephens [ctb] (yaml), Kirill Simonov [ctb] (yaml), Yihui Xie [ctb] (yaml), Zhuoer Dong [ctb] (yaml), Jeffrey Horner [ctb] (yaml), Will Beasley [ctb] (yaml), Brendan O'Connor [ctb] (yaml), Gregory Warnes [ctb] (yaml), Michael Quinn [ctb] (yaml), Zhian Kamvar [ctb] (yaml), Charlie Gao [ctb] (yaml), Kuba Podgórski [ctb] (zip), Rich Geldreich [ctb] (zip)", + "Maintainer": "Gábor Csárdi " + }, "palmerpenguins": { "Package": "palmerpenguins", "Version": "0.1.1", @@ -7173,7 +7233,7 @@ "Title": "Palmer Archipelago (Antarctica) Penguin Data", "Date": "2022-08-12", "Authors@R": "c( person(given = \"Allison\", family = \"Horst\", role = c(\"aut\", \"cre\"), email = \"ahorst@ucsb.edu\", comment = c(ORCID = \"0000-0002-6047-5564\")), person(given = \"Alison\", family = \"Hill\", role = c(\"aut\"), email = \"apresstats@gmail.com\", comment = c(ORCID = \"0000-0002-8082-1890\")), person(given = \"Kristen\", family = \"Gorman\", role = c(\"aut\"), email = \"kbgorman@alaska.edu\", comment = c(ORCID = \"0000-0002-0258-9264\")) )", - "Description": "Size measurements, clutch observations, and blood isotope ratios for adult foraging Ad\u00e9lie, Chinstrap, and Gentoo penguins observed on islands in the Palmer Archipelago near Palmer Station, Antarctica. Data were collected and made available by Dr. Kristen Gorman and the Palmer Station Long Term Ecological Research (LTER) Program.", + "Description": "Size measurements, clutch observations, and blood isotope ratios for adult foraging Adélie, Chinstrap, and Gentoo penguins observed on islands in the Palmer Archipelago near Palmer Station, Antarctica. Data were collected and made available by Dr. Kristen Gorman and the Palmer Station Long Term Ecological Research (LTER) Program.", "License": "CC0", "Encoding": "UTF-8", "LazyData": "true", @@ -7201,7 +7261,7 @@ "Package": "pander", "Version": "0.6.6", "Source": "Repository", - "Authors@R": "c( person(\"Gergely\", \"Dar\u00f3czi\", , \"daroczig@rapporter.net\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3149-8537\")), person(\"Roman\", \"Tsegelskyi\", , \"roman.tsegelskyi@gmail.com\", role = c(\"aut\")))", + "Authors@R": "c( person(\"Gergely\", \"Daróczi\", , \"daroczig@rapporter.net\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3149-8537\")), person(\"Roman\", \"Tsegelskyi\", , \"roman.tsegelskyi@gmail.com\", role = c(\"aut\")))", "Title": "An R 'Pandoc' Writer", "Type": "Package", "Encoding": "UTF-8", @@ -7256,13 +7316,13 @@ "VignetteBuilder": "knitr", "RoxygenNote": "7.3.2", "NeedsCompilation": "yes", - "Author": "Gergely Dar\u00f3czi [aut, cre] (), Roman Tsegelskyi [aut]", - "Maintainer": "Gergely Dar\u00f3czi ", + "Author": "Gergely Daróczi [aut, cre] (), Roman Tsegelskyi [aut]", + "Maintainer": "Gergely Daróczi ", "Repository": "CRAN" }, "parallelly": { "Package": "parallelly", - "Version": "1.46.0", + "Version": "1.47.0", "Source": "Repository", "Title": "Enhancing the 'parallel' Package", "Imports": [ @@ -7288,7 +7348,7 @@ "NeedsCompilation": "yes", "Author": "Henrik Bengtsson [aut, cre, cph] (ORCID: ), Mike Cheng [ctb]", "Maintainer": "Henrik Bengtsson ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "parameters": { "Package": "parameters", @@ -7296,8 +7356,8 @@ "Source": "Repository", "Type": "Package", "Title": "Processing of Model Parameters", - "Authors@R": "c(person(given = \"Daniel\", family = \"L\u00fcdecke\", role = c(\"aut\", \"cre\"), email = \"officialeasystats@gmail.com\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(given = \"Dominique\", family = \"Makowski\", role = \"aut\", email = \"dom.makowski@gmail.com\", comment = c(ORCID = \"0000-0001-5375-9967\")), person(given = \"Mattan S.\", family = \"Ben-Shachar\", role = \"aut\", email = \"matanshm@post.bgu.ac.il\", comment = c(ORCID = \"0000-0002-4287-4801\")), person(given = \"Indrajeet\", family = \"Patil\", role = \"aut\", email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(given = \"S\u00f8ren\", family = \"H\u00f8jsgaard\", role = \"aut\", email = \"sorenh@math.aau.dk\"), person(given = \"Brenton M.\", family = \"Wiernik\", role = \"aut\", email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\")), person(given = \"Zen J.\", family = \"Lau\", role = \"ctb\", email = \"zenjuen.lau@ntu.edu.sg\"), person(given = \"Vincent\", family = \"Arel-Bundock\", role = \"ctb\", email = \"vincent.arel-bundock@umontreal.ca\", comment = c(ORCID = \"0000-0003-2042-7063\")), person(given = \"Jeffrey\", family = \"Girard\", role = \"ctb\", email = \"me@jmgirard.com\", comment = c(ORCID = \"0000-0002-7359-3746\")), person(given = \"Christina\", family = \"Maimone\", role = \"rev\", email = \"christina.maimone@northwestern.edu\"), person(given = \"Niels\", family = \"Ohlsen\", role = \"rev\"), person(given = \"Douglas Ezra\", family = \"Morrison\", role = \"ctb\", email = \"dmorrison01@ucla.edu\", comment = c(ORCID = \"0000-0002-7195-830X\")), person(given = \"Joseph\", family = \"Luchman\", role = \"ctb\", email = \"jluchman@gmail.com\", comment = c(ORCID = \"0000-0002-8886-9717\")))", - "Maintainer": "Daniel L\u00fcdecke ", + "Authors@R": "c(person(given = \"Daniel\", family = \"Lüdecke\", role = c(\"aut\", \"cre\"), email = \"officialeasystats@gmail.com\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(given = \"Dominique\", family = \"Makowski\", role = \"aut\", email = \"dom.makowski@gmail.com\", comment = c(ORCID = \"0000-0001-5375-9967\")), person(given = \"Mattan S.\", family = \"Ben-Shachar\", role = \"aut\", email = \"matanshm@post.bgu.ac.il\", comment = c(ORCID = \"0000-0002-4287-4801\")), person(given = \"Indrajeet\", family = \"Patil\", role = \"aut\", email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(given = \"Søren\", family = \"Højsgaard\", role = \"aut\", email = \"sorenh@math.aau.dk\"), person(given = \"Brenton M.\", family = \"Wiernik\", role = \"aut\", email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\")), person(given = \"Zen J.\", family = \"Lau\", role = \"ctb\", email = \"zenjuen.lau@ntu.edu.sg\"), person(given = \"Vincent\", family = \"Arel-Bundock\", role = \"ctb\", email = \"vincent.arel-bundock@umontreal.ca\", comment = c(ORCID = \"0000-0003-2042-7063\")), person(given = \"Jeffrey\", family = \"Girard\", role = \"ctb\", email = \"me@jmgirard.com\", comment = c(ORCID = \"0000-0002-7359-3746\")), person(given = \"Christina\", family = \"Maimone\", role = \"rev\", email = \"christina.maimone@northwestern.edu\"), person(given = \"Niels\", family = \"Ohlsen\", role = \"rev\"), person(given = \"Douglas Ezra\", family = \"Morrison\", role = \"ctb\", email = \"dmorrison01@ucla.edu\", comment = c(ORCID = \"0000-0002-7195-830X\")), person(given = \"Joseph\", family = \"Luchman\", role = \"ctb\", email = \"jluchman@gmail.com\", comment = c(ORCID = \"0000-0002-8886-9717\")))", + "Maintainer": "Daniel Lüdecke ", "Description": "Utilities for processing the parameters of various statistical models. Beyond computing p values, CIs, and other indices for a wide variety of models (see list of supported models using the function 'insight::supported_models()'), this package implements features like bootstrapping or simulating of parameters and models, feature reduction (feature extraction and variable selection) as well as functions to describe data and variable characteristics (e.g. skewness, kurtosis, smoothness or distribution).", "License": "GPL-3", "URL": "https://easystats.github.io/parameters/", @@ -7461,7 +7521,7 @@ "Config/Needs/check": "stan-dev/cmdstanr", "Config/rcmdcheck/ignore-inconsequential-notes": "true", "NeedsCompilation": "no", - "Author": "Daniel L\u00fcdecke [aut, cre] (ORCID: ), Dominique Makowski [aut] (ORCID: ), Mattan S. Ben-Shachar [aut] (ORCID: ), Indrajeet Patil [aut] (ORCID: ), S\u00f8ren H\u00f8jsgaard [aut], Brenton M. Wiernik [aut] (ORCID: ), Zen J. Lau [ctb], Vincent Arel-Bundock [ctb] (ORCID: ), Jeffrey Girard [ctb] (ORCID: ), Christina Maimone [rev], Niels Ohlsen [rev], Douglas Ezra Morrison [ctb] (ORCID: ), Joseph Luchman [ctb] (ORCID: )", + "Author": "Daniel Lüdecke [aut, cre] (ORCID: ), Dominique Makowski [aut] (ORCID: ), Mattan S. Ben-Shachar [aut] (ORCID: ), Indrajeet Patil [aut] (ORCID: ), Søren Højsgaard [aut], Brenton M. Wiernik [aut] (ORCID: ), Zen J. Lau [ctb], Vincent Arel-Bundock [ctb] (ORCID: ), Jeffrey Girard [ctb] (ORCID: ), Christina Maimone [rev], Niels Ohlsen [rev], Douglas Ezra Morrison [ctb] (ORCID: ), Joseph Luchman [ctb] (ORCID: )", "Repository": "CRAN" }, "pbkrtest": { @@ -7469,9 +7529,9 @@ "Version": "0.5.5", "Source": "Repository", "Title": "Parametric Bootstrap, Kenward-Roger and Satterthwaite Based Methods for Test in Mixed Models", - "Authors@R": "c( person(given = \"Ulrich\", family = \"Halekoh\", email = \"uhalekoh@health.sdu.dk\", role = c(\"aut\", \"cph\")), person(given = \"S\u00f8ren\", family = \"H\u00f8jsgaard\", email = \"sorenh@math.aau.dk\", role = c(\"aut\", \"cre\", \"cph\")) )", - "Maintainer": "S\u00f8ren H\u00f8jsgaard ", - "Description": "Computes p-values based on (a) Satterthwaite or Kenward-Rogers degree of freedom methods and (b) parametric bootstrap for mixed effects models as implemented in the 'lme4' package. Implements parametric bootstrap test for generalized linear mixed models as implemented in 'lme4' and generalized linear models. The package is documented in the paper by Halekoh and H\u00f8jsgaard, (2012, ). Please see 'citation(\"pbkrtest\")' for citation details.", + "Authors@R": "c( person(given = \"Ulrich\", family = \"Halekoh\", email = \"uhalekoh@health.sdu.dk\", role = c(\"aut\", \"cph\")), person(given = \"Søren\", family = \"Højsgaard\", email = \"sorenh@math.aau.dk\", role = c(\"aut\", \"cre\", \"cph\")) )", + "Maintainer": "Søren Højsgaard ", + "Description": "Computes p-values based on (a) Satterthwaite or Kenward-Rogers degree of freedom methods and (b) parametric bootstrap for mixed effects models as implemented in the 'lme4' package. Implements parametric bootstrap test for generalized linear mixed models as implemented in 'lme4' and generalized linear models. The package is documented in the paper by Halekoh and Højsgaard, (2012, ). Please see 'citation(\"pbkrtest\")' for citation details.", "URL": "https://people.math.aau.dk/~sorenh/software/pbkrtest/", "Depends": [ "R (>= 4.2.0)", @@ -7498,18 +7558,18 @@ "RoxygenNote": "7.3.2", "LazyData": "true", "NeedsCompilation": "no", - "Author": "Ulrich Halekoh [aut, cph], S\u00f8ren H\u00f8jsgaard [aut, cre, cph]", + "Author": "Ulrich Halekoh [aut, cph], Søren Højsgaard [aut, cre, cph]", "Repository": "CRAN" }, "performance": { "Package": "performance", - "Version": "0.15.2", + "Version": "0.16.0", "Source": "Repository", "Type": "Package", "Title": "Assessment of Regression Models Performance", - "Authors@R": "c(person(given = \"Daniel\", family = \"L\u00fcdecke\", role = c(\"aut\", \"cre\"), email = \"officialeasystats@gmail.com\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(given = \"Dominique\", family = \"Makowski\", role = c(\"aut\", \"ctb\"), email = \"dom.makowski@gmail.com\", comment = c(ORCID = \"0000-0001-5375-9967\")), person(given = \"Mattan S.\", family = \"Ben-Shachar\", role = c(\"aut\", \"ctb\"), email = \"matanshm@post.bgu.ac.il\", comment = c(ORCID = \"0000-0002-4287-4801\")), person(given = \"Indrajeet\", family = \"Patil\", role = c(\"aut\", \"ctb\"), email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(given = \"Philip\", family = \"Waggoner\", role = c(\"aut\", \"ctb\"), email = \"philip.waggoner@gmail.com\", comment = c(ORCID = \"0000-0002-7825-7573\")), person(given = \"Brenton M.\", family = \"Wiernik\", role = c(\"aut\", \"ctb\"), email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\")), person(given = \"R\u00e9mi\", family = \"Th\u00e9riault\", role = c(\"aut\", \"ctb\"), email = \"remi.theriault@mail.mcgill.ca\", comment = c(ORCID = \"0000-0003-4315-6788\")), person(given = \"Vincent\", family = \"Arel-Bundock\", email = \"vincent.arel-bundock@umontreal.ca\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2042-7063\")), person(given = \"Martin\", family = \"Jullum\", role = \"rev\"), person(given = \"gjo11\", role = \"rev\"), person(given = \"Etienne\", family = \"Bacher\", , email = \"etienne.bacher@protonmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9271-5075\")), person(given = \"Joseph\", family = \"Luchman\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8886-9717\")))", - "Maintainer": "Daniel L\u00fcdecke ", - "Description": "Utilities for computing measures to assess model quality, which are not directly provided by R's 'base' or 'stats' packages. These include e.g. measures like r-squared, intraclass correlation coefficient (Nakagawa, Johnson & Schielzeth (2017) ), root mean squared error or functions to check models for overdispersion, singularity or zero-inflation and more. Functions apply to a large variety of regression models, including generalized linear models, mixed effects models and Bayesian models. References: L\u00fcdecke et al. (2021) .", + "Authors@R": "c(person(given = \"Daniel\", family = \"Lüdecke\", role = c(\"aut\", \"cre\"), email = \"officialeasystats@gmail.com\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(given = \"Dominique\", family = \"Makowski\", role = c(\"aut\", \"ctb\"), email = \"dom.makowski@gmail.com\", comment = c(ORCID = \"0000-0001-5375-9967\")), person(given = \"Mattan S.\", family = \"Ben-Shachar\", role = c(\"aut\", \"ctb\"), email = \"matanshm@post.bgu.ac.il\", comment = c(ORCID = \"0000-0002-4287-4801\")), person(given = \"Indrajeet\", family = \"Patil\", role = c(\"aut\", \"ctb\"), email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(given = \"Philip\", family = \"Waggoner\", role = c(\"aut\", \"ctb\"), email = \"philip.waggoner@gmail.com\", comment = c(ORCID = \"0000-0002-7825-7573\")), person(given = \"Brenton M.\", family = \"Wiernik\", role = c(\"aut\", \"ctb\"), email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\")), person(given = \"Rémi\", family = \"Thériault\", role = c(\"aut\", \"ctb\"), email = \"remi.theriault@mail.mcgill.ca\", comment = c(ORCID = \"0000-0003-4315-6788\")), person(given = \"Vincent\", family = \"Arel-Bundock\", email = \"vincent.arel-bundock@umontreal.ca\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2042-7063\")), person(given = \"Martin\", family = \"Jullum\", role = \"rev\"), person(given = \"gjo11\", role = \"rev\"), person(given = \"Etienne\", family = \"Bacher\", email = \"etienne.bacher@protonmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9271-5075\")), person(given = \"Joseph\", family = \"Luchman\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8886-9717\")))", + "Maintainer": "Daniel Lüdecke ", + "Description": "Utilities for computing measures to assess model quality, which are not directly provided by R's 'base' or 'stats' packages. These include e.g. measures like r-squared, intraclass correlation coefficient (Nakagawa, Johnson & Schielzeth (2017) ), root mean squared error or functions to check models for overdispersion, singularity or zero-inflation and more. Functions apply to a large variety of regression models, including generalized linear models, mixed effects models and Bayesian models. References: Lüdecke et al. (2021) .", "License": "GPL-3", "URL": "https://easystats.github.io/performance/", "BugReports": "https://github.com/easystats/performance/issues", @@ -7518,8 +7578,8 @@ ], "Imports": [ "bayestestR (>= 0.17.0)", - "insight (>= 1.4.2)", - "datawizard (>= 1.2.0)", + "insight (>= 1.4.4)", + "datawizard (>= 1.3.0)", "stats", "methods", "utils" @@ -7595,7 +7655,7 @@ "rstanarm", "rstantools", "sandwich", - "see (>= 0.9.0)", + "see (>= 0.13.0)", "survey", "survival", "testthat (>= 3.2.1)", @@ -7605,13 +7665,13 @@ ], "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/Needs/website": "rstudio/bslib, r-lib/pkgdown, easystats/easystatstemplate", "Config/rcmdcheck/ignore-inconsequential-notes": "true", "NeedsCompilation": "no", - "Author": "Daniel L\u00fcdecke [aut, cre] (ORCID: ), Dominique Makowski [aut, ctb] (ORCID: ), Mattan S. Ben-Shachar [aut, ctb] (ORCID: ), Indrajeet Patil [aut, ctb] (ORCID: ), Philip Waggoner [aut, ctb] (ORCID: ), Brenton M. Wiernik [aut, ctb] (ORCID: ), R\u00e9mi Th\u00e9riault [aut, ctb] (ORCID: ), Vincent Arel-Bundock [ctb] (ORCID: ), Martin Jullum [rev], gjo11 [rev], Etienne Bacher [ctb] (ORCID: ), Joseph Luchman [ctb] (ORCID: )", + "Author": "Daniel Lüdecke [aut, cre] (ORCID: ), Dominique Makowski [aut, ctb] (ORCID: ), Mattan S. Ben-Shachar [aut, ctb] (ORCID: ), Indrajeet Patil [aut, ctb] (ORCID: ), Philip Waggoner [aut, ctb] (ORCID: ), Brenton M. Wiernik [aut, ctb] (ORCID: ), Rémi Thériault [aut, ctb] (ORCID: ), Vincent Arel-Bundock [ctb] (ORCID: ), Martin Jullum [rev], gjo11 [rev], Etienne Bacher [ctb] (ORCID: ), Joseph Luchman [ctb] (ORCID: )", "Repository": "CRAN" }, "pillar": { @@ -7667,8 +7727,8 @@ "Config/gha/extra-packages": "units=?ignore-before-r=4.3.0", "Config/Needs/website": "tidyverse/tidytemplate", "NeedsCompilation": "no", - "Author": "Kirill M\u00fcller [aut, cre] (ORCID: ), Hadley Wickham [aut], RStudio [cph]", - "Maintainer": "Kirill M\u00fcller ", + "Author": "Kirill Müller [aut, cre] (ORCID: ), Hadley Wickham [aut], RStudio [cph]", + "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "pkgbuild": { @@ -7676,7 +7736,7 @@ "Version": "1.4.8", "Source": "Repository", "Title": "Find Tools Needed to Build R Packages", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Provides functions used to build R packages. Locates compilers needed to build R packages on various platforms and ensures the PATH is configured appropriately so R can use them.", "License": "MIT + file LICENSE", "URL": "https://github.com/r-lib/pkgbuild, https://pkgbuild.r-lib.org", @@ -7706,8 +7766,8 @@ "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut], Jim Hester [aut], G\u00e1bor Cs\u00e1rdi [aut, cre], Posit Software, PBC [cph, fnd] (ROR: )", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Hadley Wickham [aut], Jim Hester [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "pkgconfig": { @@ -7715,8 +7775,8 @@ "Version": "2.0.3", "Source": "Repository", "Title": "Private Configuration for 'R' Packages", - "Author": "G\u00e1bor Cs\u00e1rdi", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Gábor Csárdi", + "Maintainer": "Gábor Csárdi ", "Description": "Set configuration options on a per-package basis. Options set by a given package only apply to that package, other packages are unaffected.", "License": "MIT + file LICENSE", "LazyData": "true", @@ -7739,7 +7799,7 @@ "Version": "2.2.0", "Source": "Repository", "Title": "Make Static HTML Documentation for a Package", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jay\", \"Hesselberth\", role = \"aut\", comment = c(ORCID = \"0000-0002-6299-179X\")), person(\"Ma\u00eblle\", \"Salmon\", role = \"aut\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"Olivier\", \"Roy\", role = \"aut\"), person(\"Salim\", \"Br\u00fcggemann\", role = \"aut\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jay\", \"Hesselberth\", role = \"aut\", comment = c(ORCID = \"0000-0002-6299-179X\")), person(\"Maëlle\", \"Salmon\", role = \"aut\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"Olivier\", \"Roy\", role = \"aut\"), person(\"Salim\", \"Brüggemann\", role = \"aut\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Generate an attractive and useful website from a source package. 'pkgdown' converts your documentation, vignettes, 'README', and more to 'HTML' making it easy to share information about your package online.", "License": "MIT + file LICENSE", "URL": "https://pkgdown.r-lib.org/, https://github.com/r-lib/pkgdown", @@ -7800,13 +7860,13 @@ "RoxygenNote": "7.3.3", "SystemRequirements": "pandoc", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut, cre] (ORCID: ), Jay Hesselberth [aut] (ORCID: ), Ma\u00eblle Salmon [aut] (ORCID: ), Olivier Roy [aut], Salim Br\u00fcggemann [aut] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", + "Author": "Hadley Wickham [aut, cre] (ORCID: ), Jay Hesselberth [aut] (ORCID: ), Maëlle Salmon [aut] (ORCID: ), Olivier Roy [aut], Salim Brüggemann [aut] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "pkgload": { "Package": "pkgload", - "Version": "1.4.1", + "Version": "1.5.2", "Source": "Repository", "Title": "Simulate Package Installation and Attach", "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Core team\", role = \"ctb\", comment = \"Some namespace and vignette code extracted from base R\") )", @@ -7855,16 +7915,16 @@ }, "plotly": { "Package": "plotly", - "Version": "4.11.0", + "Version": "4.12.0", "Source": "Repository", "Title": "Create Interactive Web Graphics via 'plotly.js'", - "Authors@R": "c(person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"cpsievert1@gmail.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Chris\", \"Parmer\", role = \"aut\", email = \"chris@plot.ly\"), person(\"Toby\", \"Hocking\", role = \"aut\", email = \"tdhock5@gmail.com\"), person(\"Scott\", \"Chamberlain\", role = \"aut\", email = \"myrmecocystus@gmail.com\"), person(\"Karthik\", \"Ram\", role = \"aut\", email = \"karthik.ram@gmail.com\"), person(\"Marianne\", \"Corvellec\", role = \"aut\", email = \"marianne.corvellec@igdore.org\", comment = c(ORCID = \"0000-0002-1994-3581\")), person(\"Pedro\", \"Despouy\", role = \"aut\", email = \"pedro@plot.ly\"), person(\"Salim\", \"Br\u00fcggemann\", role = \"ctb\", email = \"salim-b@pm.me\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Plotly Technologies Inc.\", role = \"cph\"))", + "Authors@R": "c(person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"cpsievert1@gmail.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Chris\", \"Parmer\", role = \"aut\", email = \"chris@plot.ly\"), person(\"Toby\", \"Hocking\", role = \"aut\", email = \"tdhock5@gmail.com\"), person(\"Scott\", \"Chamberlain\", role = \"aut\", email = \"myrmecocystus@gmail.com\"), person(\"Karthik\", \"Ram\", role = \"aut\", email = \"karthik.ram@gmail.com\"), person(\"Marianne\", \"Corvellec\", role = \"aut\", email = \"marianne.corvellec@igdore.org\", comment = c(ORCID = \"0000-0002-1994-3581\")), person(\"Pedro\", \"Despouy\", role = \"aut\", email = \"pedro@plot.ly\"), person(\"Salim\", \"Brüggemann\", role = \"ctb\", email = \"salim-b@pm.me\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Plotly Technologies Inc.\", role = \"cph\"))", "License": "MIT + file LICENSE", "Description": "Create interactive web graphics from 'ggplot2' graphs and/or a custom interface to the (MIT-licensed) JavaScript library 'plotly.js' inspired by the grammar of graphics.", "URL": "https://plotly-r.com, https://github.com/plotly/plotly.R, https://plotly.com/r/", "BugReports": "https://github.com/plotly/plotly.R/issues", "Depends": [ - "R (>= 3.2.0)", + "R (>= 3.5.0)", "ggplot2 (>= 3.0.0)" ], "Imports": [ @@ -7922,11 +7982,11 @@ "ggridges" ], "LazyData": "true", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "Encoding": "UTF-8", "Config/Needs/check": "tidyverse/ggplot2, ggobi/GGally, rcmdcheck, devtools, reshape2, s2", "NeedsCompilation": "no", - "Author": "Carson Sievert [aut, cre] (ORCID: ), Chris Parmer [aut], Toby Hocking [aut], Scott Chamberlain [aut], Karthik Ram [aut], Marianne Corvellec [aut] (ORCID: ), Pedro Despouy [aut], Salim Br\u00fcggemann [ctb] (ORCID: ), Plotly Technologies Inc. [cph]", + "Author": "Carson Sievert [aut, cre] (ORCID: ), Chris Parmer [aut], Toby Hocking [aut], Scott Chamberlain [aut], Karthik Ram [aut], Marianne Corvellec [aut] (ORCID: ), Pedro Despouy [aut], Salim Brüggemann [ctb] (ORCID: ), Plotly Technologies Inc. [cph]", "Maintainer": "Carson Sievert ", "Repository": "CRAN" }, @@ -7969,10 +8029,11 @@ }, "png": { "Package": "png", - "Version": "0.1-8", + "Version": "0.1-9", "Source": "Repository", "Title": "Read and write PNG images", - "Author": "Simon Urbanek ", + "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.nz, ORCID: )", + "Authors@R": "person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.nz\", ORCID=\"0000-0003-2297-1732\"))", "Maintainer": "Simon Urbanek ", "Depends": [ "R (>= 2.9.0)" @@ -7980,10 +8041,10 @@ "Description": "This package provides an easy and simple way to read, write and display bitmap images stored in the PNG format. It can read and write both files and in-memory raw vectors.", "License": "GPL-2 | GPL-3", "SystemRequirements": "libpng", - "URL": "http://www.rforge.net/png/", + "URL": "https://www.rforge.net/png/", + "BugReports": "https://github.com/s-u/png/issues/", "NeedsCompilation": "yes", - "Repository": "https://packagemanager.posit.co/cran/latest", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "polyclip": { "Package": "polyclip", @@ -8004,8 +8065,7 @@ "Note": "built from Clipper C++ version 6.4.0", "NeedsCompilation": "yes", "Author": "Angus Johnson [aut] (C++ original, http://www.angusj.com/delphi/clipper.php), Adrian Baddeley [aut, trl, cre], Kurt Hornik [ctb], Brian D. Ripley [ctb], Elliott Sales de Andrade [ctb], Paul Murrell [ctb], Ege Rubak [ctb], Mark Padgham [ctb]", - "Repository": "https://packagemanager.posit.co/cran/__linux__/noble/latest", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "polynom": { "Package": "polynom", @@ -8101,10 +8161,10 @@ }, "processx": { "Package": "processx", - "Version": "3.8.6", + "Version": "3.9.0", "Source": "Repository", "Title": "Execute and Control System Processes", - "Authors@R": "c( person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )", "Description": "Tools to run system processes in the background. It can check if a background process is running; wait on a background process to finish; get the exit status of finished processes; kill background processes. It can read the standard output and error of the processes, using non-blocking connections. 'processx' can poll a process for standard output or error, with a timeout. It can also poll several processes at once.", "License": "MIT + file LICENSE", "URL": "https://processx.r-lib.org, https://github.com/r-lib/processx", @@ -8113,7 +8173,7 @@ "R (>= 3.4.0)" ], "Imports": [ - "ps (>= 1.2.0)", + "ps (>= 1.9.3)", "R6", "utils" ], @@ -8132,11 +8192,12 @@ ], "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-25", "Encoding": "UTF-8", - "RoxygenNote": "7.3.1.9000", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "G\u00e1bor Cs\u00e1rdi [aut, cre, cph] (), Winston Chang [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph, fnd]", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Gábor Csárdi [aut, cre, cph] (ORCID: ), Winston Chang [aut], Posit Software, PBC [cph, fnd] (ROR: ), Ascent Digital Services [cph, fnd]", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "profvis": { @@ -8179,7 +8240,7 @@ "Version": "1.2.3", "Source": "Repository", "Title": "Terminal Progress Bars", - "Authors@R": "c( person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Rich\", \"FitzJohn\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Rich\", \"FitzJohn\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Configurable Progress bars, they may include percentage, elapsed time, and/or the estimated completion time. They work in terminals, in 'Emacs' 'ESS', 'RStudio', 'Windows' 'Rgui' and the 'macOS' 'R.app'. The package also provides a 'C++' 'API', that works with or without 'Rcpp'.", "License": "MIT + file LICENSE", "URL": "https://github.com/r-lib/progress#readme, http://r-lib.github.io/progress/", @@ -8203,8 +8264,8 @@ "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "NeedsCompilation": "no", - "Author": "G\u00e1bor Cs\u00e1rdi [aut, cre], Rich FitzJohn [aut], Posit Software, PBC [cph, fnd]", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Gábor Csárdi [aut, cre], Rich FitzJohn [aut], Posit Software, PBC [cph, fnd]", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "promises": { @@ -8256,10 +8317,10 @@ }, "ps": { "Package": "ps", - "Version": "1.9.1", + "Version": "1.9.3", "Source": "Repository", "Title": "List, Query, Manipulate System Processes", - "Authors@R": "c( person(\"Jay\", \"Loden\", role = \"aut\"), person(\"Dave\", \"Daeschler\", role = \"aut\"), person(\"Giampaolo\", \"Rodola'\", role = \"aut\"), person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jay\", \"Loden\", role = \"aut\"), person(\"Dave\", \"Daeschler\", role = \"aut\"), person(\"Giampaolo\", \"Rodola'\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "List, query and manipulate all system processes, on 'Windows', 'Linux' and 'macOS'.", "License": "MIT + file LICENSE", "URL": "https://github.com/r-lib/ps, https://ps.r-lib.org/", @@ -8286,16 +8347,17 @@ "Biarch": "true", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-28", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Jay Loden [aut], Dave Daeschler [aut], Giampaolo Rodola' [aut], G\u00e1bor Cs\u00e1rdi [aut, cre], Posit Software, PBC [cph, fnd]", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Jay Loden [aut], Dave Daeschler [aut], Giampaolo Rodola' [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "purrr": { "Package": "purrr", - "Version": "1.2.0", + "Version": "1.2.2", "Source": "Repository", "Title": "Functional Programming Tools", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"https://ror.org/03wc8by49\")) )", @@ -8342,62 +8404,6 @@ "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, - "quadprog": { - "Package": "quadprog", - "Version": "1.5-8", - "Source": "Repository", - "Type": "Package", - "Title": "Functions to Solve Quadratic Programming Problems", - "Date": "2019-11-20", - "Author": "S original by Berwin A. Turlach R port by Andreas Weingessel Fortran contributions from Cleve Moler (dposl/LINPACK and (a modified version of) dpodi/LINPACK)", - "Maintainer": "Berwin A. Turlach ", - "Description": "This package contains routines and documentation for solving quadratic programming problems.", - "Depends": [ - "R (>= 3.1.0)" - ], - "License": "GPL (>= 2)", - "NeedsCompilation": "yes", - "Repository": "https://packagemanager.posit.co/cran/latest", - "Encoding": "UTF-8" - }, - "quantmod": { - "Package": "quantmod", - "Version": "0.4.28", - "Source": "Repository", - "Type": "Package", - "Title": "Quantitative Financial Modelling Framework", - "Authors@R": "c( person(given=c(\"Jeffrey\",\"A.\"), family=\"Ryan\", role=c(\"aut\",\"cph\")), person(given=c(\"Joshua\",\"M.\"), family=\"Ulrich\", role=c(\"cre\",\"aut\"), email=\"josh.m.ulrich@gmail.com\"), person(given=c(\"Ethan\",\"B.\"), family=\"Smith\", role=\"ctb\"), person(given=\"Wouter\", family=\"Thielen\", role=\"ctb\"), person(given=\"Paul\", family=\"Teetor\", role=\"ctb\"), person(given=\"Steve\", family=\"Bronder\", role=\"ctb\") )", - "Depends": [ - "R (>= 3.2.0)", - "xts(>= 0.9-0)", - "zoo", - "TTR(>= 0.2)", - "methods" - ], - "Imports": [ - "curl", - "jsonlite(>= 1.1)" - ], - "Suggests": [ - "DBI", - "RMySQL", - "RSQLite", - "timeSeries", - "xml2", - "downloader", - "tinytest" - ], - "Description": "Specify, build, trade, and analyse quantitative financial trading strategies.", - "LazyLoad": "yes", - "License": "GPL-3", - "URL": "https://www.quantmod.com/, https://github.com/joshuaulrich/quantmod", - "BugReports": "https://github.com/joshuaulrich/quantmod/issues", - "NeedsCompilation": "no", - "Author": "Jeffrey A. Ryan [aut, cph], Joshua M. Ulrich [cre, aut], Ethan B. Smith [ctb], Wouter Thielen [ctb], Paul Teetor [ctb], Steve Bronder [ctb]", - "Maintainer": "Joshua M. Ulrich ", - "Repository": "https://packagemanager.posit.co/cran/latest", - "Encoding": "UTF-8" - }, "quantreg": { "Package": "quantreg", "Version": "6.1", @@ -8467,52 +8473,53 @@ "Config/testthat/edition": "3", "Config/usethis/last-upkeep": "2025-04-25", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "SystemRequirements": "freetype2, libpng, libtiff, libjpeg, libwebp, libwebpmux", "NeedsCompilation": "yes", "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: ), Maxim Shemanarev [aut, cph] (Author of AGG), Tony Juricic [ctb, cph] (Contributor to AGG), Milan Marusinec [ctb, cph] (Contributor to AGG), Spencer Garrett [ctb] (Contributor to AGG), Posit Software, PBC [cph, fnd] (ROR: )", - "Repository": "CRAN", - "Date/Publication": "2026-03-23 08:50:02 UTC" + "Repository": "CRAN" }, "rappdirs": { "Package": "rappdirs", - "Version": "0.3.3", + "Version": "0.3.4", "Source": "Repository", "Type": "Package", "Title": "Application Directories: Determine Where to Save Data, Caches, and Logs", - "Authors@R": "c(person(given = \"Hadley\", family = \"Wickham\", role = c(\"trl\", \"cre\", \"cph\"), email = \"hadley@rstudio.com\"), person(given = \"RStudio\", role = \"cph\"), person(given = \"Sridhar\", family = \"Ratnakumar\", role = \"aut\"), person(given = \"Trent\", family = \"Mick\", role = \"aut\"), person(given = \"ActiveState\", role = \"cph\", comment = \"R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs\"), person(given = \"Eddy\", family = \"Petrisor\", role = \"ctb\"), person(given = \"Trevor\", family = \"Davis\", role = c(\"trl\", \"aut\")), person(given = \"Gabor\", family = \"Csardi\", role = \"ctb\"), person(given = \"Gregory\", family = \"Jefferis\", role = \"ctb\"))", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"trl\", \"cre\", \"cph\")), person(\"Sridhar\", \"Ratnakumar\", role = \"aut\"), person(\"Trent\", \"Mick\", role = \"aut\"), person(\"ActiveState\", role = \"cph\", comment = \"R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs\"), person(\"Eddy\", \"Petrisor\", role = \"ctb\"), person(\"Trevor\", \"Davis\", role = c(\"trl\", \"aut\"), comment = c(ORCID = \"0000-0001-6341-4639\")), person(\"Gabor\", \"Csardi\", role = \"ctb\"), person(\"Gregory\", \"Jefferis\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "An easy way to determine which directories on the users computer you should use to save data, caches and logs. A port of Python's 'Appdirs' () to R.", "License": "MIT + file LICENSE", "URL": "https://rappdirs.r-lib.org, https://github.com/r-lib/rappdirs", "BugReports": "https://github.com/r-lib/rappdirs/issues", "Depends": [ - "R (>= 3.2)" + "R (>= 4.1)" ], "Suggests": [ - "roxygen2", - "testthat (>= 3.0.0)", "covr", + "roxygen2", + "testthat (>= 3.2.0)", "withr" ], - "Copyright": "Original python appdirs module copyright (c) 2010 ActiveState Software Inc. R port copyright Hadley Wickham, RStudio. See file LICENSE for details.", - "Encoding": "UTF-8", - "RoxygenNote": "7.1.1", + "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-05-05", + "Copyright": "Original python appdirs module copyright (c) 2010 ActiveState Software Inc. R port copyright Hadley Wickham, Posit, PBC. See file LICENSE for details.", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Hadley Wickham [trl, cre, cph], RStudio [cph], Sridhar Ratnakumar [aut], Trent Mick [aut], ActiveState [cph] (R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs), Eddy Petrisor [ctb], Trevor Davis [trl, aut], Gabor Csardi [ctb], Gregory Jefferis [ctb]", - "Maintainer": "Hadley Wickham ", + "Author": "Hadley Wickham [trl, cre, cph], Sridhar Ratnakumar [aut], Trent Mick [aut], ActiveState [cph] (R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs), Eddy Petrisor [ctb], Trevor Davis [trl, aut] (ORCID: ), Gabor Csardi [ctb], Gregory Jefferis [ctb], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, "rbibutils": { "Package": "rbibutils", - "Version": "2.4", + "Version": "2.4.1", "Source": "Repository", "Type": "Package", "Title": "Read 'Bibtex' Files and Convert Between Bibliography Formats", - "Authors@R": "c( person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"aut\", \"cre\"), \t email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(\"R port, R code, new C code and modifications to bibutils' C code, conversion to Bibentry (R and C code)\", comment = c(ORCID = \"0000-0003-2839-346X\")) ), person(given = \"Chris\", family = \"Putman\", role = \"aut\", comment = \"src/*, author of the bibutils libraries, https://sourceforge.net/projects/bibutils/\"), person(given = \"Richard\", family = \"Mathar\", role = \"ctb\", comment = \"src/addsout.c\"), person(given = \"Johannes\", family = \"Wilm\", role = \"ctb\", comment = \"src/biblatexin.c, src/bltypes.c\"), person(\"R Core Team\", role = \"ctb\", comment = \"base R's bibentry and bibstyle implementation\") )", + "Authors@R": "c( person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"aut\", \"cre\"), \t email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(ORCID = \"0000-0003-2839-346X\", \"R port, R code, new C code and modifications to bibutils' C code, conversion to Bibentry (R and C code)\") ), person(given = \"Chris\", family = \"Putman\", role = \"aut\", comment = \"src/*, author of the bibutils libraries, https://sourceforge.net/projects/bibutils/\"), person(given = \"Richard\", family = \"Mathar\", role = \"ctb\", comment = \"src/addsout.c\"), person(given = \"Johannes\", family = \"Wilm\", role = \"ctb\", comment = \"src/biblatexin.c, src/bltypes.c\"), person(\"R Core Team\", role = \"ctb\", comment = \"base R's bibentry and bibstyle implementation\") )", "Description": "Read and write 'Bibtex' files. Convert between bibliography formats, including 'Bibtex', 'Biblatex', 'PubMed', 'Endnote', and 'Bibentry'. Includes a port of the 'bibutils' utilities by Chris Putnam . Supports all bibliography formats and character encodings implemented in 'bibutils'.", "License": "GPL-2", - "URL": "https://geobosh.github.io/rbibutils/ (doc), https://github.com/GeoBosh/rbibutils (devel)", + "URL": "https://geobosh.github.io/rbibutils/ (doc), https://CRAN.R-project.org/package=rbibutils", "BugReports": "https://github.com/GeoBosh/rbibutils/issues", "Depends": [ "R (>= 2.10)" @@ -8527,7 +8534,7 @@ "Encoding": "UTF-8", "NeedsCompilation": "yes", "Config/Needs/memcheck": "devtools, rcmdcheck", - "Author": "Georgi N. Boshnakov [aut, cre] (R port, R code, new C code and modifications to bibutils' C code, conversion to Bibentry (R and C code), comment.ORCID: 0000-0003-2839-346X), Chris Putman [aut] (src/*, author of the bibutils libraries, https://sourceforge.net/projects/bibutils/), Richard Mathar [ctb] (src/addsout.c), Johannes Wilm [ctb] (src/biblatexin.c, src/bltypes.c), R Core Team [ctb] (base R's bibentry and bibstyle implementation)", + "Author": "Georgi N. Boshnakov [aut, cre] (ORCID: , R port, R code, new C code and modifications to bibutils' C code, conversion to Bibentry (R and C code)), Chris Putman [aut] (src/*, author of the bibutils libraries, https://sourceforge.net/projects/bibutils/), Richard Mathar [ctb] (src/addsout.c), Johannes Wilm [ctb] (src/biblatexin.c, src/bltypes.c), R Core Team [ctb] (base R's bibentry and bibstyle implementation)", "Maintainer": "Georgi N. Boshnakov ", "Repository": "CRAN" }, @@ -8536,7 +8543,7 @@ "Version": "1.4.0", "Source": "Repository", "Title": "Run 'R CMD check' from 'R' and Capture Results", - "Authors@R": "person(given = \"G\u00e1bor\", family = \"Cs\u00e1rdi\", role = c(\"cre\", \"aut\"), email = \"csardi.gabor@gmail.com\")", + "Authors@R": "person(given = \"Gábor\", family = \"Csárdi\", role = c(\"cre\", \"aut\"), email = \"csardi.gabor@gmail.com\")", "Description": "Run 'R CMD check' from 'R' and capture the results of the individual checks. Supports running checks in the background, timeouts, pretty printing and comparing check results.", "License": "MIT + file LICENSE", "URL": "https://r-lib.github.io/rcmdcheck/, https://github.com/r-Lib/rcmdcheck#readme", @@ -8571,8 +8578,8 @@ "RoxygenNote": "7.1.2", "Config/testthat/edition": "3", "NeedsCompilation": "no", - "Author": "G\u00e1bor Cs\u00e1rdi [cre, aut]", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Gábor Csárdi [cre, aut]", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "reactR": { @@ -8653,29 +8660,31 @@ }, "readr": { "Package": "readr", - "Version": "2.1.6", + "Version": "2.2.0", "Source": "Repository", "Title": "Read Rectangular Text Data", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Romain\", \"Francois\", role = \"ctb\"), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jyl\u00e4nki\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\"), person(\"Mikkel\", \"J\u00f8rgensen\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\") )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Romain\", \"Francois\", role = \"ctb\"), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\") )", "Description": "The goal of 'readr' is to provide a fast and friendly way to read rectangular data (like 'csv', 'tsv', and 'fwf'). It is designed to flexibly parse many types of data found in the wild, while still cleanly failing when data unexpectedly changes.", "License": "MIT + file LICENSE", "URL": "https://readr.tidyverse.org, https://github.com/tidyverse/readr", "BugReports": "https://github.com/tidyverse/readr/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ - "cli (>= 3.2.0)", + "cli", "clipr", "crayon", + "glue", "hms (>= 0.4.1)", - "lifecycle (>= 0.2.0)", + "lifecycle", "methods", "R6", "rlang", "tibble", "utils", - "vroom (>= 1.6.0)" + "vroom (>= 1.7.0)", + "withr" ], "Suggests": [ "covr", @@ -8688,7 +8697,6 @@ "testthat (>= 3.2.0)", "tzdb (>= 0.1.1)", "waldo", - "withr", "xml2" ], "LinkingTo": [ @@ -8699,13 +8707,14 @@ "Config/Needs/website": "tidyverse, tidyverse/tidytemplate", "Config/testthat/edition": "3", "Config/testthat/parallel": "false", + "Config/usethis/last-upkeep": "2025-11-14", "Encoding": "UTF-8", "Language": "en-US", "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut], Jim Hester [aut], Romain Francois [ctb], Jennifer Bryan [aut, cre] (ORCID: ), Shelby Bearrows [ctb], Posit Software, PBC [cph, fnd], https://github.com/mandreyel/ [cph] (mio library), Jukka Jyl\u00e4nki [ctb, cph] (grisu3 implementation), Mikkel J\u00f8rgensen [ctb, cph] (grisu3 implementation)", + "Author": "Hadley Wickham [aut], Jim Hester [aut], Romain Francois [ctb], Jennifer Bryan [aut, cre] (ORCID: ), Shelby Bearrows [ctb], Posit Software, PBC [cph, fnd] (ROR: ), https://github.com/mandreyel/ [cph] (mio library), Jukka Jylänki [ctb, cph] (grisu3 implementation), Mikkel Jørgensen [ctb, cph] (grisu3 implementation)", "Maintainer": "Jennifer Bryan ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "readxl": { "Package": "readxl", @@ -8749,7 +8758,7 @@ }, "reformulas": { "Package": "reformulas", - "Version": "0.4.3", + "Version": "0.4.4", "Source": "Repository", "Title": "Machinery for Processing Random Effect Formulas", "Authors@R": "c( person(given = \"Ben\", family = \"Bolker\", role = c(\"aut\", \"cre\"), email = \"bolker@mcmaster.ca\", comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"Anna\", \"Ly\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0210-0342\")) )", @@ -8767,9 +8776,11 @@ "Suggests": [ "lme4", "tinytest", - "glmmTMB" + "glmmTMB", + "Formula" ], "RoxygenNote": "7.3.3", + "Config/testthat/edition": "3", "NeedsCompilation": "no", "Author": "Ben Bolker [aut, cre] (ORCID: ), Anna Ly [ctb] (ORCID: )", "Maintainer": "Ben Bolker ", @@ -8800,7 +8811,7 @@ "Version": "2.1.2", "Source": "Repository", "Title": "Tidy Output from Regular Expression Matching", - "Authors@R": "c( person(\"G\u00e1bor\", \"Cs\u00e1rdi\", email = \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Matthew\", \"Lincoln\", email = \"matthew.d.lincoln@gmail.com\", role = c(\"ctb\")))", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", email = \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Matthew\", \"Lincoln\", email = \"matthew.d.lincoln@gmail.com\", role = c(\"ctb\")))", "Description": "Wrappers on 'regexpr' and 'gregexpr' to return the match results in tidy data frames.", "License": "MIT + file LICENSE", "LazyData": "true", @@ -8816,55 +8827,8 @@ ], "Encoding": "UTF-8", "NeedsCompilation": "no", - "Author": "G\u00e1bor Cs\u00e1rdi [aut, cre], Matthew Lincoln [ctb]", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", - "Repository": "CRAN" - }, - "remotes": { - "Package": "remotes", - "Version": "2.5.0", - "Source": "Repository", - "Title": "R Package Installation from Remote Repositories, Including 'GitHub'", - "Authors@R": "c( person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Martin\", \"Morgan\", role = \"aut\"), person(\"Dan\", \"Tenenbaum\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = \"cph\") )", - "Description": "Download and install R packages stored in 'GitHub', 'GitLab', 'Bitbucket', 'Bioconductor', or plain 'subversion' or 'git' repositories. This package provides the 'install_*' functions in 'devtools'. Indeed most of the code was copied over from 'devtools'.", - "License": "MIT + file LICENSE", - "URL": "https://remotes.r-lib.org, https://github.com/r-lib/remotes#readme", - "BugReports": "https://github.com/r-lib/remotes/issues", - "Depends": [ - "R (>= 3.0.0)" - ], - "Imports": [ - "methods", - "stats", - "tools", - "utils" - ], - "Suggests": [ - "brew", - "callr", - "codetools", - "covr", - "curl", - "git2r (>= 0.23.0)", - "knitr", - "mockery", - "pingr", - "pkgbuild (>= 1.0.1)", - "rmarkdown", - "rprojroot", - "testthat (>= 3.0.0)", - "webfakes", - "withr" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", - "SystemRequirements": "Subversion for install_svn, git for install_git", - "NeedsCompilation": "no", - "Author": "G\u00e1bor Cs\u00e1rdi [aut, cre], Jim Hester [aut], Hadley Wickham [aut], Winston Chang [aut], Martin Morgan [aut], Dan Tenenbaum [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph]", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Gábor Csárdi [aut, cre], Matthew Lincoln [ctb]", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "renv": { @@ -8887,6 +8851,7 @@ "compiler", "covr", "cpp11", + "curl", "devtools", "generics", "gitcreds", @@ -8910,7 +8875,7 @@ "webfakes" ], "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", @@ -9010,18 +8975,15 @@ }, "rex": { "Package": "rex", - "Version": "1.2.1", + "Version": "1.2.2", "Source": "Repository", "Type": "Package", "Title": "Friendly Regular Expressions", - "Authors@R": "c( person(\"Kevin\", \"Ushey\", , \"kevinushey@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jim\", \"Hester\", , \"james.f.hester@gmail.com\", role = \"aut\"), person(\"Robert\", \"Krzyzanowski\", , \"rkrzyzanowski@gmail.com\", role = \"aut\") )", + "Authors@R": "c( person(\"Kevin\", \"Ushey\", , \"kevin@rstudio.com\", role = c(\"aut\", \"cre\")), person(\"Jim\", \"Hester\", , \"james.f.hester@gmail.com\", role = \"aut\"), person(\"Robert\", \"Krzyzanowski\", , \"rkrzyzanowski@gmail.com\", role = \"aut\") )", "Description": "A friendly interface for the construction of regular expressions.", "License": "MIT + file LICENSE", - "URL": "https://github.com/kevinushey/rex", - "BugReports": "https://github.com/kevinushey/rex/issues", - "Imports": [ - "lazyeval" - ], + "URL": "https://rex.r-lib.org, https://github.com/r-lib/rex", + "BugReports": "https://github.com/r-lib/rex/issues", "Suggests": [ "covr", "dplyr", @@ -9039,15 +9001,36 @@ "Encoding": "UTF-8", "RoxygenNote": "7.1.2", "Collate": "'aaa.R' 'utils.R' 'escape.R' 'capture.R' 'character_class.R' 'counts.R' 'lookarounds.R' 'match.R' 'or.R' 'rex-mode.R' 'rex.R' 'shortcuts.R' 'wildcards.R' 'zzz.R'", + "Config/Needs/website": "r-lib/pkgdown, tidyverse/tidytemplate", + "Imports": [ + "withr" + ], "NeedsCompilation": "no", "Author": "Kevin Ushey [aut, cre], Jim Hester [aut], Robert Krzyzanowski [aut]", - "Maintainer": "Kevin Ushey ", + "Maintainer": "Kevin Ushey ", "Repository": "CRAN" }, "rjags": { "Package": "rjags", - "Version": "4-16", + "Version": "4-17", "Source": "Repository", + "Date": "2025-03-24", + "Title": "Bayesian Graphical Models using MCMC", + "Authors@R": "c(person(\"Martyn\", \"Plummer\", role=c(\"aut\",\"cre\"), email=\"martyn.plummer@gmail.com\"), person(\"Alexey\", \"Stukalov\", role=\"ctb\"), person(\"Matt\", \"Denwood\", role=\"ctb\"))", + "Depends": [ + "R (>= 2.14.0)", + "coda (>= 0.13)" + ], + "SystemRequirements": "JAGS 4.x.y", + "URL": "https://mcmc-jags.sourceforge.io", + "Suggests": [ + "tcltk" + ], + "Description": "Interface to the JAGS MCMC library.", + "License": "GPL (== 2)", + "NeedsCompilation": "yes", + "Author": "Martyn Plummer [aut, cre], Alexey Stukalov [ctb], Matt Denwood [ctb]", + "Maintainer": "Martyn Plummer ", "Repository": "CRAN" }, "rlang": { @@ -9061,7 +9044,7 @@ "ByteCompile": "true", "Biarch": "true", "Depends": [ - "R (>= 3.5.0)" + "R (>= 4.0.0)" ], "Imports": [ "utils" @@ -9080,7 +9063,7 @@ "pkgload", "rmarkdown", "stats", - "testthat (>= 3.2.0)", + "testthat (>= 3.3.2)", "tibble", "usethis", "vctrs (>= 0.2.3)", @@ -9090,7 +9073,7 @@ "winch" ], "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "URL": "https://rlang.r-lib.org, https://github.com/r-lib/rlang", "BugReports": "https://github.com/r-lib/rlang/issues", "Config/build/compilation-database": "true", @@ -9103,7 +9086,7 @@ }, "rmarkdown": { "Package": "rmarkdown", - "Version": "2.30", + "Version": "2.31", "Source": "Repository", "Type": "Package", "Title": "Dynamic Documents for R", @@ -9150,7 +9133,7 @@ "Config/Needs/website": "rstudio/quillt, pkgdown", "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "SystemRequirements": "pandoc (>= 1.14) - http://pandoc.org", "NeedsCompilation": "no", "Author": "JJ Allaire [aut], Yihui Xie [aut, cre] (ORCID: ), Christophe Dervieux [aut] (ORCID: ), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (ORCID: ), Andrew Dunning [ctb] (ORCID: ), Atsushi Yasumoto [ctb, cph] (ORCID: , cph: Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert [ctb] (ORCID: ), Devon Ryan [ctb] (ORCID: ), Frederik Aust [ctb] (ORCID: ), Jeff Allen [ctb], JooYoung Seo [ctb] (ORCID: ), Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], Posit Software, PBC [cph, fnd], jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)", @@ -9159,10 +9142,10 @@ }, "robustbase": { "Package": "robustbase", - "Version": "0.99-6", + "Version": "0.99-7", "Source": "Repository", - "VersionNote": "Released 0.99-5 on 2024-11-01, 0.99-4-1 on 2024-09-24, 0.99-4 on 2024-08-19, 0.99-3 on 2024-07-01 to CRAN", - "Date": "2025-09-03", + "VersionNote": "Released 0.99-6 on 2025-09-03, 0.99-5 on 2024-11-01, 0.99-4-1 on 2024-09-24, 0.99-4 on 2024-08-19 to CRAN", + "Date": "2026-02-03", "Title": "Basic Robust Statistics", "Authors@R": "c(person(\"Martin\",\"Maechler\", role=c(\"aut\",\"cre\"), email=\"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) , person(\"Peter\", \"Rousseeuw\", role=\"ctb\", comment = \"Qn and Sn\") , person(\"Christophe\", \"Croux\", role=\"ctb\", comment = \"Qn and Sn\") , person(\"Valentin\", \"Todorov\", role = \"aut\", email = \"valentin.todorov@chello.at\", comment = \"most robust Cov\") , person(\"Andreas\", \"Ruckstuhl\", role = \"aut\", email = \"andreas.ruckstuhl@zhaw.ch\", comment = \"nlrob, anova, glmrob\") , person(\"Matias\", \"Salibian-Barrera\", role = \"aut\", email = \"matias@stat.ubc.ca\", comment = \"lmrob orig.\") , person(\"Tobias\", \"Verbeke\", role = c(\"ctb\",\"fnd\"), email = \"tobias.verbeke@openanalytics.eu\", comment = \"mc, adjbox\") , person(\"Manuel\", \"Koller\", role = \"aut\", email = \"koller.manuel@gmail.com\", comment = \"mc, lmrob, psi-func.\") , person(c(\"Eduardo\", \"L. T.\"), \"Conceicao\", role = \"aut\", email = \"mail@eduardoconceicao.org\", comment = \"MM-, tau-, CM-, and MTL- nlrob\") , person(\"Maria\", \"Anna di Palma\", role = \"ctb\", comment = \"initial version of Comedian\") )", "URL": "https://robustbase.R-forge.R-project.org/, https://R-forge.R-project.org/R/?group_id=59, https://R-forge.R-project.org/scm/viewvc.php/pkg/robustbase/?root=robustbase, svn://svn.r-forge.r-project.org/svnroot/robustbase/pkg/robustbase", @@ -9220,7 +9203,7 @@ "Version": "7.3.3", "Source": "Repository", "Title": "In-Line Documentation for R", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Peter\", \"Danenberg\", , \"pcd@roxygen.org\", role = c(\"aut\", \"cph\")), person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = \"aut\"), person(\"Manuel\", \"Eugster\", role = c(\"aut\", \"cph\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Peter\", \"Danenberg\", , \"pcd@roxygen.org\", role = c(\"aut\", \"cph\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"aut\"), person(\"Manuel\", \"Eugster\", role = c(\"aut\", \"cph\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Generate your Rd documentation, 'NAMESPACE' file, and collation field using specially formatted comments. Writing documentation in-line with code makes it easier to keep your documentation up-to-date as your requirements change. 'roxygen2' is inspired by the 'Doxygen' system for C++.", "License": "MIT + file LICENSE", "URL": "https://roxygen2.r-lib.org/, https://github.com/r-lib/roxygen2", @@ -9265,7 +9248,7 @@ "Language": "en-GB", "RoxygenNote": "7.3.2.9000", "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut, cre, cph] (ORCID: ), Peter Danenberg [aut, cph], G\u00e1bor Cs\u00e1rdi [aut], Manuel Eugster [aut, cph], Posit Software, PBC [cph, fnd] (ROR: )", + "Author": "Hadley Wickham [aut, cre, cph] (ORCID: ), Peter Danenberg [aut, cph], Gábor Csárdi [aut], Manuel Eugster [aut, cph], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, @@ -9299,13 +9282,13 @@ "Config/autostyle/strict": "true", "Config/Needs/website": "tidyverse/tidytemplate", "NeedsCompilation": "no", - "Author": "Kirill M\u00fcller [aut, cre] (ORCID: )", - "Maintainer": "Kirill M\u00fcller ", + "Author": "Kirill Müller [aut, cre] (ORCID: )", + "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "rsconnect": { "Package": "rsconnect", - "Version": "1.7.0", + "Version": "1.8.0", "Source": "Repository", "Type": "Package", "Title": "Deploy Docs, Apps, and APIs to 'Posit Connect', 'shinyapps.io', and 'RPubs'", @@ -9321,6 +9304,7 @@ "cli", "curl", "digest", + "httr2", "jsonlite", "lifecycle", "openssl (>= 2.0.0)", @@ -9328,7 +9312,7 @@ "packrat (>= 0.6)", "renv (>= 1.0.0)", "rlang (>= 1.0.0)", - "rstudioapi (>= 0.5)", + "rstudioapi (>= 0.18.0)", "snowflakeauth", "tools", "yaml (>= 2.1.5)", @@ -9342,7 +9326,6 @@ "MASS", "plumber (>= 0.3.2)", "quarto", - "RCurl", "reticulate", "rmarkdown (>= 1.1)", "shiny", @@ -9413,7 +9396,7 @@ }, "rstudioapi": { "Package": "rstudioapi", - "Version": "0.17.1", + "Version": "0.18.0", "Source": "Repository", "Title": "Safely Access the RStudio API", "Description": "Access the RStudio API (if available) and provide informative error messages when it's not.", @@ -9422,13 +9405,16 @@ "License": "MIT + file LICENSE", "URL": "https://rstudio.github.io/rstudioapi/, https://github.com/rstudio/rstudioapi", "BugReports": "https://github.com/rstudio/rstudioapi/issues", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "Suggests": [ "testthat", "knitr", "rmarkdown", "clipr", - "covr" + "covr", + "curl", + "jsonlite", + "withr" ], "VignetteBuilder": "knitr", "Encoding": "UTF-8", @@ -9481,7 +9467,7 @@ "Version": "3.0.0", "Source": "Repository", "Title": "Query 'R' Versions, Including 'r-release' and 'r-oldrel'", - "Authors@R": "c(person(given = \"G\u00e1bor\", family = \"Cs\u00e1rdi\", role = c(\"aut\", \"cre\"), email = \"csardi.gabor@gmail.com\"), person(given = \"Jeroen\", family = \"Ooms\", role = \"ctb\", email = \"jeroen.ooms@stat.ucla.edu\"), person(given = \"R Consortium\", role = \"fnd\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")))", + "Authors@R": "c(person(given = \"Gábor\", family = \"Csárdi\", role = c(\"aut\", \"cre\"), email = \"csardi.gabor@gmail.com\"), person(given = \"Jeroen\", family = \"Ooms\", role = \"ctb\", email = \"jeroen.ooms@stat.ucla.edu\"), person(given = \"R Consortium\", role = \"fnd\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")))", "Description": "Query the main 'R' 'SVN' repository to find the versions 'r-release' and 'r-oldrel' refer to, and also all previous 'R' versions and their release dates.", "License": "MIT + file LICENSE", "URL": "https://github.com/r-hub/rversions, https://r-hub.github.io/rversions/", @@ -9499,8 +9485,8 @@ "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "NeedsCompilation": "no", - "Author": "G\u00e1bor Cs\u00e1rdi [aut, cre], Jeroen Ooms [ctb], R Consortium [fnd], Posit Software, PBC [cph, fnd] (ROR: )", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Gábor Csárdi [aut, cre], Jeroen Ooms [ctb], R Consortium [fnd], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "rvest": { @@ -9710,8 +9696,8 @@ "Version": "1.2.3", "Source": "Repository", "Title": "R Session Information", - "Authors@R": "c( person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = \"cre\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Robert\", \"Flight\", role = \"aut\"), person(\"Kirill\", \"M\u00fcller\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"R Core team\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"cre\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Robert\", \"Flight\", role = \"aut\"), person(\"Kirill\", \"Müller\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"R Core team\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Maintainer": "Gábor Csárdi ", "Description": "Query and print information about the current R session. It is similar to 'utils::sessionInfo()', but includes more information about packages, and where they were installed from.", "License": "GPL-2", "URL": "https://github.com/r-lib/sessioninfo#readme, https://sessioninfo.r-lib.org", @@ -9739,7 +9725,7 @@ "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", - "Author": "G\u00e1bor Cs\u00e1rdi [cre], Hadley Wickham [aut], Winston Chang [aut], Robert Flight [aut], Kirill M\u00fcller [aut], Jim Hester [aut], R Core team [ctb], Posit Software, PBC [cph, fnd]", + "Author": "Gábor Csárdi [cre], Hadley Wickham [aut], Winston Chang [aut], Robert Flight [aut], Kirill Müller [aut], Jim Hester [aut], R Core team [ctb], Posit Software, PBC [cph, fnd]", "Repository": "CRAN" }, "shape": { @@ -9764,18 +9750,18 @@ }, "shiny": { "Package": "shiny", - "Version": "1.12.1", + "Version": "1.13.0", "Source": "Repository", "Type": "Package", "Title": "Web Application Framework for R", "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"JJ\", \"Allaire\", , \"jj@posit.co\", role = \"aut\"), person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Garrick\", \"Aden-Buie\", , \"garrick@adenbuie.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"Yihui\", \"Xie\", , \"yihui@posit.co\", role = \"aut\"), person(\"Jeff\", \"Allen\", role = \"aut\"), person(\"Jonathan\", \"McPherson\", , \"jonathan@posit.co\", role = \"aut\"), person(\"Alan\", \"Dipert\", role = \"aut\"), person(\"Barbara\", \"Borges\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(, \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(, \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt\"), person(, \"jQuery UI contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Prem Nawaz\", \"Khan\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Victor\", \"Tsaran\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Dennis\", \"Lembree\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Srinivasu\", \"Chakravarthula\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Cathy\", \"O'Connor\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(, \"PayPal, Inc\", role = \"cph\", comment = \"Bootstrap accessibility plugin\"), person(\"Stefan\", \"Petre\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap-datepicker library\"), person(\"Andrew\", \"Rowls\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap-datepicker library\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js library\"), person(\"Salmen\", \"Bejaoui\", role = c(\"ctb\", \"cph\"), comment = \"selectize-plugin-a11y library\"), person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"), comment = \"ion.rangeSlider library\"), person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"), comment = \"Javascript strftime library\"), person(, \"SpryMedia Limited\", role = c(\"ctb\", \"cph\"), comment = \"DataTables library\"), person(\"Ivan\", \"Sagalaev\", role = c(\"ctb\", \"cph\"), comment = \"highlight.js library\"), person(\"R Core Team\", role = c(\"ctb\", \"cph\"), comment = \"tar implementation from R\") )", "Description": "Makes it incredibly easy to build interactive web applications with R. Automatic \"reactive\" binding between inputs and outputs and extensive prebuilt widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.", - "License": "GPL-3 | file LICENSE", + "License": "MIT + file LICENSE", "URL": "https://shiny.posit.co/, https://github.com/rstudio/shiny", "BugReports": "https://github.com/rstudio/shiny/issues", "Depends": [ "methods", - "R (>= 3.0.2)" + "R (>= 3.1.2)" ], "Imports": [ "bslib (>= 0.6.0)", @@ -9832,7 +9818,7 @@ "NeedsCompilation": "no", "Author": "Winston Chang [aut] (ORCID: ), Joe Cheng [aut], JJ Allaire [aut], Carson Sievert [aut, cre] (ORCID: ), Barret Schloerke [aut] (ORCID: ), Garrick Aden-Buie [aut] (ORCID: ), Yihui Xie [aut], Jeff Allen [aut], Jonathan McPherson [aut], Alan Dipert [aut], Barbara Borges [aut], Posit Software, PBC [cph, fnd] (ROR: ), jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Prem Nawaz Khan [ctb] (Bootstrap accessibility plugin), Victor Tsaran [ctb] (Bootstrap accessibility plugin), Dennis Lembree [ctb] (Bootstrap accessibility plugin), Srinivasu Chakravarthula [ctb] (Bootstrap accessibility plugin), Cathy O'Connor [ctb] (Bootstrap accessibility plugin), PayPal, Inc [cph] (Bootstrap accessibility plugin), Stefan Petre [ctb, cph] (Bootstrap-datepicker library), Andrew Rowls [ctb, cph] (Bootstrap-datepicker library), Brian Reavis [ctb, cph] (selectize.js library), Salmen Bejaoui [ctb, cph] (selectize-plugin-a11y library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library), SpryMedia Limited [ctb, cph] (DataTables library), Ivan Sagalaev [ctb, cph] (highlight.js library), R Core Team [ctb, cph] (tar implementation from R)", "Maintainer": "Carson Sievert ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "sjPlot": { "Package": "sjPlot", @@ -9841,8 +9827,8 @@ "Type": "Package", "Encoding": "UTF-8", "Title": "Data Visualization for Statistics in Social Science", - "Authors@R": "c( person(\"Daniel\", \"L\u00fcdecke\", email = \"d.luedecke@uke.de\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-8895-3206\")), person(\"Alexander\", \"Bartel\", role = \"ctb\", comment = c(ORCID = \"0000-0002-1280-6138\")), person(\"Carsten\", \"Schwemmer\", email = \"carsten.schwemmer@uni-bamberg.de\", role = \"ctb\"), person(given = \"Chuck\", family = \"Powell\", role = \"ctb\", email = \"ibecav@gmail.com\", comment = c(ORCID = \"0000-0002-3606-2188\")), person(given = \"Amir\", family = \"Djalovski\", role = \"ctb\", email = \"Amir.DJV@gmail.com\"), person(given = \"Johannes\", family = \"Titz\", role = \"ctb\", email = \"johannes@titz.science\", comment = c(ORCID = \"0000-0002-1102-5719\")))", - "Maintainer": "Daniel L\u00fcdecke ", + "Authors@R": "c( person(\"Daniel\", \"Lüdecke\", email = \"d.luedecke@uke.de\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-8895-3206\")), person(\"Alexander\", \"Bartel\", role = \"ctb\", comment = c(ORCID = \"0000-0002-1280-6138\")), person(\"Carsten\", \"Schwemmer\", email = \"carsten.schwemmer@uni-bamberg.de\", role = \"ctb\"), person(given = \"Chuck\", family = \"Powell\", role = \"ctb\", email = \"ibecav@gmail.com\", comment = c(ORCID = \"0000-0002-3606-2188\")), person(given = \"Amir\", family = \"Djalovski\", role = \"ctb\", email = \"Amir.DJV@gmail.com\"), person(given = \"Johannes\", family = \"Titz\", role = \"ctb\", email = \"johannes@titz.science\", comment = c(ORCID = \"0000-0002-1102-5719\")))", + "Maintainer": "Daniel Lüdecke ", "Description": "Collection of plotting and table output functions for data visualization. Results of various statistical analyses (that are commonly used in social sciences) can be visualized using this package, including simple and cross tabulated frequencies, histograms, box plots, (generalized) linear models, mixed effects models, principal component analysis and correlation matrices, cluster analyses, scatter plots, stacked scales, effects plots of regression models (including interaction terms) and much more. This package supports labelled data.", "License": "GPL-3", "Depends": [ @@ -9902,7 +9888,7 @@ "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "NeedsCompilation": "no", - "Author": "Daniel L\u00fcdecke [aut, cre] (ORCID: ), Alexander Bartel [ctb] (ORCID: ), Carsten Schwemmer [ctb], Chuck Powell [ctb] (ORCID: ), Amir Djalovski [ctb], Johannes Titz [ctb] (ORCID: )", + "Author": "Daniel Lüdecke [aut, cre] (ORCID: ), Alexander Bartel [ctb] (ORCID: ), Carsten Schwemmer [ctb], Chuck Powell [ctb] (ORCID: ), Amir Djalovski [ctb], Johannes Titz [ctb] (ORCID: )", "Repository": "CRAN" }, "sjlabelled": { @@ -9912,8 +9898,8 @@ "Type": "Package", "Encoding": "UTF-8", "Title": "Labelled Data Utility Functions", - "Authors@R": "c( person(\"Daniel\", \"L\u00fcdecke\", role = c(\"aut\", \"cre\"), email = \"d.luedecke@uke.de\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(\"avid\", \"Ranzolin\", role = \"ctb\", email = \"daranzolin@gmail.com\"), person(\"Jonathan\", \"De Troye\", role = \"ctb\", email = \"detroyejr@outlook.com\") )", - "Maintainer": "Daniel L\u00fcdecke ", + "Authors@R": "c( person(\"Daniel\", \"Lüdecke\", role = c(\"aut\", \"cre\"), email = \"d.luedecke@uke.de\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(\"avid\", \"Ranzolin\", role = \"ctb\", email = \"daranzolin@gmail.com\"), person(\"Jonathan\", \"De Troye\", role = \"ctb\", email = \"detroyejr@outlook.com\") )", + "Maintainer": "Daniel Lüdecke ", "Description": "Collection of functions dealing with labelled data, like reading and writing data between R and other statistical software packages like 'SPSS', 'SAS' or 'Stata', and working with labelled data. This includes easy ways to get, set or change value and variable label attributes, to convert labelled vectors into factors or numeric (and vice versa), or to deal with multiple declared missing values.", "License": "GPL-3", "Depends": [ @@ -9943,7 +9929,7 @@ "RoxygenNote": "7.1.2", "VignetteBuilder": "knitr", "NeedsCompilation": "no", - "Author": "Daniel L\u00fcdecke [aut, cre] (), avid Ranzolin [ctb], Jonathan De Troye [ctb]", + "Author": "Daniel Lüdecke [aut, cre] (), avid Ranzolin [ctb], Jonathan De Troye [ctb]", "Repository": "CRAN" }, "sjmisc": { @@ -9953,8 +9939,8 @@ "Type": "Package", "Encoding": "UTF-8", "Title": "Data and Variable Transformation Functions", - "Authors@R": "c(person(\"Daniel\", \"L\u00fcdecke\", role = c(\"aut\", \"cre\"), email = \"d.luedecke@uke.de\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(\"Iago\", \"Gin\u00e9-V\u00e1zquez\", role = c(\"ctb\"), email = \"i.gine@pssjd.org\"), person(\"Alexander\", \"Bartel\", role = \"ctb\", email = \"alexander.bartel@fu-berlin.de\", comment = c(ORCID = \"0000-0002-1280-6138\")))", - "Maintainer": "Daniel L\u00fcdecke ", + "Authors@R": "c(person(\"Daniel\", \"Lüdecke\", role = c(\"aut\", \"cre\"), email = \"d.luedecke@uke.de\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(\"Iago\", \"Giné-Vázquez\", role = c(\"ctb\"), email = \"i.gine@pssjd.org\"), person(\"Alexander\", \"Bartel\", role = \"ctb\", email = \"alexander.bartel@fu-berlin.de\", comment = c(ORCID = \"0000-0002-1280-6138\")))", + "Maintainer": "Daniel Lüdecke ", "Description": "Collection of miscellaneous utility functions, supporting data transformation tasks like recoding, dichotomizing or grouping variables, setting and replacing missing values. The data transformation functions also support labelled data, and all integrate seamlessly into a 'tidyverse'-workflow.", "License": "GPL-3", "Depends": [ @@ -9992,7 +9978,7 @@ "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "NeedsCompilation": "no", - "Author": "Daniel L\u00fcdecke [aut, cre] (ORCID: ), Iago Gin\u00e9-V\u00e1zquez [ctb], Alexander Bartel [ctb] (ORCID: )", + "Author": "Daniel Lüdecke [aut, cre] (ORCID: ), Iago Giné-Vázquez [ctb], Alexander Bartel [ctb] (ORCID: )", "Repository": "CRAN" }, "sjstats": { @@ -10002,8 +9988,8 @@ "Type": "Package", "Encoding": "UTF-8", "Title": "Collection of Convenient Functions for Common Statistical Computations", - "Authors@R": "person(\"Daniel\", \"L\u00fcdecke\", role = c(\"aut\", \"cre\"), email = \"d.luedecke@uke.de\", comment = c(ORCID = \"0000-0002-8895-3206\"))", - "Maintainer": "Daniel L\u00fcdecke ", + "Authors@R": "person(\"Daniel\", \"Lüdecke\", role = c(\"aut\", \"cre\"), email = \"d.luedecke@uke.de\", comment = c(ORCID = \"0000-0002-8895-3206\"))", + "Maintainer": "Daniel Lüdecke ", "Description": "Collection of convenient functions for common statistical computations, which are not directly provided by R's base or stats packages. This package aims at providing, first, shortcuts for statistical measures, which otherwise could only be calculated with additional effort (like Cramer's V, Phi, or effect size statistics like Eta or Omega squared), or for which currently no functions available. Second, another focus lies on weighted variants of common statistical measures and tests like weighted standard error, mean, t-test, correlation, and more.", "License": "GPL-3", "Depends": [ @@ -10036,12 +10022,12 @@ "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "NeedsCompilation": "no", - "Author": "Daniel L\u00fcdecke [aut, cre] (ORCID: )", + "Author": "Daniel Lüdecke [aut, cre] (ORCID: )", "Repository": "CRAN" }, "snowflakeauth": { "Package": "snowflakeauth", - "Version": "0.2.0", + "Version": "0.2.2", "Source": "Repository", "Title": "Authentication Helpers for 'Snowflake'", "Authors@R": "c( person(\"Aaron\", \"Jacobs\", , \"aaron.jacobs@posit.co\", role = c(\"aut\")), person(\"E. David\", \"Aja\", , \"david@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -10058,6 +10044,8 @@ "openssl" ], "Suggests": [ + "httpuv", + "keyring", "testthat (>= 3.0.0)", "withr" ], @@ -10072,11 +10060,11 @@ }, "sourcetools": { "Package": "sourcetools", - "Version": "0.1.7-1", + "Version": "0.1.7-2", "Source": "Repository", "Type": "Package", "Title": "Tools for Reading, Tokenizing and Parsing R Code", - "Author": "Kevin Ushey", + "Authors@R": "person(\"Kevin\", \"Ushey\", role = c(\"aut\", \"cre\"), email = \"kevinushey@gmail.com\")", "Maintainer": "Kevin Ushey ", "Description": "Tools for the reading and tokenization of R code. The 'sourcetools' package provides both an R and C++ interface for the tokenization of R code, and helpers for interacting with the tokenized representation of R code.", "License": "MIT + file LICENSE", @@ -10090,6 +10078,7 @@ "BugReports": "https://github.com/kevinushey/sourcetools/issues", "Encoding": "UTF-8", "NeedsCompilation": "yes", + "Author": "Kevin Ushey [aut, cre]", "Repository": "CRAN" }, "spelling": { @@ -10117,7 +10106,7 @@ "NeedsCompilation": "no", "Author": "Jeroen Ooms [cre, aut] (ORCID: ), Jim Hester [aut]", "Maintainer": "Jeroen Ooms ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "stringi": { "Package": "stringi", @@ -10194,50 +10183,13 @@ "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, - "survMisc": { - "Package": "survMisc", - "Version": "0.5.6", - "Source": "Repository", - "Type": "Package", - "Date": "2022-04-07", - "Depends": [ - "survival" - ], - "Imports": [ - "graphics", - "grDevices", - "stats", - "utils", - "knitr", - "KMsurv", - "ggplot2", - "data.table", - "zoo", - "grid", - "gridExtra", - "km.ci", - "xtable" - ], - "Author": "Chris Dardis", - "Maintainer": "Chris Dardis ", - "License": "GPL-2", - "Title": "Miscellaneous Functions for Survival Data", - "Description": "A collection of functions to help in the analysis of right-censored survival data. These extend the methods available in package:survival.", - "BugReports": "https://github.com/dardisco/survMisc/issues", - "LazyData": "true", - "VignetteBuilder": "knitr", - "Collate": "'ten.R' 'nc.R' 'sf.R' 'ci.R' 'autoplotTAP.R' 'autoplotTen.R' 'print.R' 'asWide.R' 'COV.R' 'predict.R' 'comp.R' 'cutp.R' 'gastric.R' 'gof.R' 'onAttach.R' 'profLik.R' 'rsq.R' 'survMisc_package.R' 'xtable.R'", - "NeedsCompilation": "no", - "RoxygenNote": "7.1.2", - "Repository": "CRAN" - }, "survival": { "Package": "survival", - "Version": "3.8-3", + "Version": "3.8-6", "Source": "Repository", "Title": "Survival Analysis", "Priority": "recommended", - "Date": "2024-12-17", + "Date": "2026-01-09", "Depends": [ "R (>= 3.5.0)" ], @@ -10263,11 +10215,11 @@ }, "survminer": { "Package": "survminer", - "Version": "0.5.1", + "Version": "0.5.2", "Source": "Repository", "Type": "Package", "Title": "Drawing Survival Curves using 'ggplot2'", - "Date": "2025-09-03", + "Date": "2026-02-24", "Authors@R": "c( person(\"Alboukadel\", \"Kassambara\", role = c(\"aut\", \"cre\"), email = \"alboukadel.kassambara@gmail.com\"), person(\"Marcin\", \"Kosinski\", role = c(\"aut\"), email = \"m.p.kosinski@gmail.com\"), person(\"Przemyslaw\", \"Biecek\", role = c(\"aut\"), email = \"przemyslaw.biecek@gmail.com\"), person(\"Scheipl\", \"Fabian\", role = c(\"ctb\"), email = \"fabian.scheipl@gmail.com\"))", "Description": "Contains the function 'ggsurvplot()' for drawing easily beautiful and 'ready-to-publish' survival curves with the 'number at risk' table and 'censoring count plot'. Other functions are also available to plot adjusted curves for `Cox` model and to visually examine 'Cox' model assumptions.", "License": "GPL-2", @@ -10289,7 +10241,6 @@ "broom", "dplyr", "tidyr", - "survMisc", "purrr", "tibble", "rlang", @@ -10306,8 +10257,8 @@ "VignetteBuilder": "knitr", "URL": "https://rpkgs.datanovia.com/survminer/index.html", "BugReports": "https://github.com/kassambara/survminer/issues", - "RoxygenNote": "7.3.2", - "Collate": "'BMT.R' 'BRCAOV.survInfo.R' 'add_ggsurvplot.R' 'utilities.R' 'surv_summary.R' 'ggsurvtable.R' 'surv_pvalue.R' 'ggsurvplot_df.R' 'ggsurvplot_core.R' 'ggsurvplot_add_all.R' 'ggsurvplot_list.R' 'ggsurvplot_group_by.R' 'ggsurvplot.R' 'arrange_ggsurvplots.R' 'ggadjustedcurves.R' 'ggcompetingrisks.R' 'ggcoxdiagnostics.R' 'ggcoxfunctional.R' 'ggcoxzph.R' 'ggflexsurvplot.R' 'ggforest.R' 'ggsurvevents.R' 'ggsurvplot_combine.R' 'ggsurvplot_facet.R' 'ggsurvtheme.R' 'ggurvplot_arguments.R' 'myeloma.R' 'pairwise_survdiff.R' 'surv_cutpoint.R' 'surv_group_by.R' 'surv_fit.R' 'surv_median.R'", + "RoxygenNote": "7.3.3", + "Collate": "'BMT.R' 'BRCAOV.survInfo.R' 'add_ggsurvplot.R' 'utilities.R' 'surv_summary.R' 'ggsurvtable.R' 'surv_pvalue.R' 'ggsurvplot_df.R' 'ggsurvplot_core.R' 'ggsurvplot_add_all.R' 'ggsurvplot_list.R' 'ggsurvplot_group_by.R' 'ggsurvplot.R' 'arrange_ggsurvplots.R' 'ggadjustedcurves.R' 'ggcompetingrisks.R' 'ggcoxdiagnostics.R' 'ggcoxfunctional.R' 'ggcoxzph.R' 'ggflexsurvplot.R' 'ggforest.R' 'ggsurvevents.R' 'ggsurvplot_combine.R' 'ggsurvplot_facet.R' 'ggsurvtheme.R' 'ggurvplot_arguments.R' 'myeloma.R' 'pairwise_survdiff.R' 'surv_cutpoint.R' 'surv_group_by.R' 'surv_fit.R' 'surv_median.R' 'weighted_logrank.R'", "NeedsCompilation": "no", "Author": "Alboukadel Kassambara [aut, cre], Marcin Kosinski [aut], Przemyslaw Biecek [aut], Scheipl Fabian [ctb]", "Maintainer": "Alboukadel Kassambara ", @@ -10315,10 +10266,10 @@ }, "svglite": { "Package": "svglite", - "Version": "2.2.2.9000", - "Source": "GitHub", + "Version": "2.2.2", + "Source": "Repository", "Title": "An 'SVG' Graphics Device", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"T Jake\", \"Luciani\", , \"jake@apache.org\", role = \"aut\"), person(\"Matthieu\", \"Decorde\", , \"matthieu.decorde@ens-lyon.fr\", role = \"aut\"), person(\"Vaudor\", \"Lise\", , \"lise.vaudor@ens-lyon.fr\", role = \"aut\"), person(\"Tony\", \"Plate\", role = \"ctb\", comment = \"Early line dashing code\"), person(\"David\", \"Gohel\", role = \"ctb\", comment = \"Line dashing code and early raster code\"), person(\"Yixuan\", \"Qiu\", role = \"ctb\", comment = \"Improved styles; polypath implementation\"), person(\"H\u00e5kon\", \"Malmedal\", role = \"ctb\", comment = \"Opacity code\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"T Jake\", \"Luciani\", , \"jake@apache.org\", role = \"aut\"), person(\"Matthieu\", \"Decorde\", , \"matthieu.decorde@ens-lyon.fr\", role = \"aut\"), person(\"Vaudor\", \"Lise\", , \"lise.vaudor@ens-lyon.fr\", role = \"aut\"), person(\"Tony\", \"Plate\", role = \"ctb\", comment = \"Early line dashing code\"), person(\"David\", \"Gohel\", role = \"ctb\", comment = \"Line dashing code and early raster code\"), person(\"Yixuan\", \"Qiu\", role = \"ctb\", comment = \"Improved styles; polypath implementation\"), person(\"Håkon\", \"Malmedal\", role = \"ctb\", comment = \"Opacity code\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "A graphics device for R that produces 'Scalable Vector Graphics'. 'svglite' is a fork of the older 'RSvgDevice' package.", "License": "GPL (>= 2)", "URL": "https://svglite.r-lib.org, https://github.com/r-lib/svglite", @@ -10354,18 +10305,12 @@ "Config/testthat/edition": "3", "Config/usethis/last-upkeep": "2025-04-25", "Encoding": "UTF-8", - "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "SystemRequirements": "libpng", - "RemoteType": "github", - "RemoteHost": "api.github.com", - "RemoteRepo": "svglite", - "RemoteUsername": "r-lib", - "RemoteRef": "HEAD", - "RemoteSha": "518c837c1283ad5752c2d595a0a84d2e169111ab", "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut], Lionel Henry [aut], Thomas Lin Pedersen [cre, aut] (ORCID: ), T Jake Luciani [aut], Matthieu Decorde [aut], Vaudor Lise [aut], Tony Plate [ctb] (Early line dashing code), David Gohel [ctb] (Line dashing code and early raster code), Yixuan Qiu [ctb] (Improved styles; polypath implementation), H\u00e5kon Malmedal [ctb] (Opacity code), Posit Software, PBC [cph, fnd] (ROR: )", - "Maintainer": "Thomas Lin Pedersen " + "Author": "Hadley Wickham [aut], Lionel Henry [aut], Thomas Lin Pedersen [cre, aut] (ORCID: ), T Jake Luciani [aut], Matthieu Decorde [aut], Vaudor Lise [aut], Tony Plate [ctb] (Early line dashing code), David Gohel [ctb] (Line dashing code and early raster code), Yixuan Qiu [ctb] (Improved styles; polypath implementation), Håkon Malmedal [ctb] (Opacity code), Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Thomas Lin Pedersen ", + "Repository": "CRAN" }, "sys": { "Package": "sys", @@ -10373,7 +10318,7 @@ "Source": "Repository", "Type": "Package", "Title": "Powerful and Reliable Tools for Running System Commands in R", - "Authors@R": "c(person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = \"ctb\"))", + "Authors@R": "c(person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"ctb\"))", "Description": "Drop-in replacements for the base system2() function with fine control and consistent behavior across platforms. Supports clean interruption, timeout, background tasks, and streaming STDIN / STDOUT / STDERR over binary or text connections. Arguments on Windows automatically get encoded and quoted to work on different locales.", "License": "MIT + file LICENSE", "URL": "https://jeroen.r-universe.dev/sys", @@ -10387,13 +10332,13 @@ ], "Language": "en-US", "NeedsCompilation": "yes", - "Author": "Jeroen Ooms [aut, cre] (), G\u00e1bor Cs\u00e1rdi [ctb]", + "Author": "Jeroen Ooms [aut, cre] (), Gábor Csárdi [ctb]", "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, "systemfonts": { "Package": "systemfonts", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Type": "Package", "Title": "System Native Font Finding", @@ -10484,8 +10429,8 @@ }, "testthat": { "Package": "testthat", - "Version": "3.3.1", - "Source": "GitHub", + "Version": "3.3.2", + "Source": "Repository", "Title": "Unit Testing for R", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Core team\", role = \"ctb\", comment = \"Implementation of utils::recover()\") )", "Description": "Software testing is important, but, in part because it is frustrating and boring, many of us avoid it. 'testthat' is a testing framework for R that is easy to learn and use, and integrates with your existing 'workflow'.", @@ -10522,6 +10467,8 @@ "digest (>= 0.6.33)", "gh", "knitr", + "otel", + "otelsdk", "rmarkdown", "rstudioapi", "S7", @@ -10536,17 +10483,11 @@ "Config/testthat/parallel": "true", "Config/testthat/start-first": "watcher, parallel*", "Encoding": "UTF-8", - "Roxygen": "list(markdown = TRUE, r6 = FALSE)", "RoxygenNote": "7.3.3", - "RemoteType": "github", - "RemoteHost": "api.github.com", - "RemoteRepo": "testthat", - "RemoteUsername": "r-lib", - "RemoteRef": "HEAD", - "RemoteSha": "bec8f61164a96803550e5aafc7305d323e8558de", "NeedsCompilation": "yes", "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd], R Core team [ctb] (Implementation of utils::recover())", - "Maintainer": "Hadley Wickham " + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" }, "textshaping": { "Package": "textshaping", @@ -10590,15 +10531,14 @@ "NeedsCompilation": "yes", "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Thomas Lin Pedersen ", - "Repository": "CRAN", - "Date/Publication": "2026-03-06 10:40:02 UTC" + "Repository": "CRAN" }, "tibble": { "Package": "tibble", - "Version": "3.3.0", + "Version": "3.3.1", "Source": "Repository", "Title": "Simple Data Frames", - "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Hadley\", family = \"Wickham\", role = \"aut\", email = \"hadley@rstudio.com\"), person(given = \"Romain\", family = \"Francois\", role = \"ctb\", email = \"romain@r-enthusiasts.com\"), person(given = \"Jennifer\", family = \"Bryan\", role = \"ctb\", email = \"jenny@rstudio.com\"), person(given = \"RStudio\", role = c(\"cph\", \"fnd\")))", + "Authors@R": "c( person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = \"aut\"), person(\"Romain\", \"Francois\", , \"romain@r-enthusiasts.com\", role = \"ctb\"), person(\"Jennifer\", \"Bryan\", , \"jenny@rstudio.com\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Provides a 'tbl_df' class (the 'tibble') with stricter checking and better formatting than the traditional data frame.", "License": "MIT + file LICENSE", "URL": "https://tibble.tidyverse.org/, https://github.com/tidyverse/tibble", @@ -10643,18 +10583,19 @@ "withr" ], "VignetteBuilder": "knitr", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2.9000", - "Config/testthat/edition": "3", - "Config/testthat/parallel": "true", - "Config/testthat/start-first": "vignette-formats, as_tibble, add, invariants", + "Config/autostyle/rmd": "false", "Config/autostyle/scope": "line_breaks", "Config/autostyle/strict": "true", - "Config/autostyle/rmd": "false", "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", + "Config/testthat/start-first": "vignette-formats, as_tibble, add, invariants", + "Config/usethis/last-upkeep": "2025-06-07", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3.9000", "NeedsCompilation": "yes", - "Author": "Kirill M\u00fcller [aut, cre] (ORCID: ), Hadley Wickham [aut], Romain Francois [ctb], Jennifer Bryan [ctb], RStudio [cph, fnd]", - "Maintainer": "Kirill M\u00fcller ", + "Author": "Kirill Müller [aut, cre] (ORCID: ), Hadley Wickham [aut], Romain Francois [ctb], Jennifer Bryan [ctb], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "tidygraph": { @@ -10705,7 +10646,7 @@ "Config/testthat/edition": "3", "NeedsCompilation": "yes", "Author": "Thomas Lin Pedersen [cre, aut] ()", - "Repository": "https://packagemanager.posit.co/cran/__linux__/noble/latest" + "Repository": "CRAN" }, "tidyr": { "Package": "tidyr", @@ -10756,7 +10697,7 @@ "NeedsCompilation": "yes", "Author": "Hadley Wickham [aut, cre], Davis Vaughan [aut], Maximilian Girlich [aut], Kevin Ushey [ctb], Posit Software, PBC [cph, fnd]", "Maintainer": "Hadley Wickham ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "tidyselect": { "Package": "tidyselect", @@ -10867,7 +10808,7 @@ }, "timeDate": { "Package": "timeDate", - "Version": "4051.111", + "Version": "4052.112", "Source": "Repository", "Title": "Rmetrics - Chronological and Calendar Objects", "Authors@R": "c(person(\"Diethelm\", \"Wuertz\", role=\"aut\", comment = \"original code\") , person(\"Tobias\", \"Setz\", role = c(\"aut\"), email = \"tobias.setz@live.com\") , person(\"Yohan\", \"Chalabi\", role = \"aut\") , person(\"Martin\",\"Maechler\", role = \"ctb\", email = \"maechler@stat.math.ethz.ch\", comment = c(ORCID = \"0000-0002-8685-9910\")) , person(given = c(\"Joe\", \"W.\"), family = \"Byers\", role = \"ctb\") , person(given = c(\"Georgi\", \"N.\"), family = \"Boshnakov\", role = c(\"cre\", \"aut\"), email = \"georgi.boshnakov@manchester.ac.uk\", comment = c(ORCID = \"0000-0003-2839-346X\")) )", @@ -10886,16 +10827,16 @@ ], "License": "GPL (>= 2)", "Encoding": "UTF-8", - "URL": "https://geobosh.github.io/timeDateDoc/ (doc), https://r-forge.r-project.org/scm/viewvc.php/pkg/timeDate/?root=rmetrics (devel), https://www.rmetrics.org", - "BugReports": "https://r-forge.r-project.org/projects/rmetrics", + "URL": "https://geobosh.github.io/timeDateDoc/ (doc), https://CRAN.R-project.org/package=timeDate, https://www.rmetrics.org", + "BugReports": "https://r-forge.r-project.org/tracker/?atid=633&group_id=156&func=browse", "NeedsCompilation": "no", "Author": "Diethelm Wuertz [aut] (original code), Tobias Setz [aut], Yohan Chalabi [aut], Martin Maechler [ctb] (ORCID: ), Joe W. Byers [ctb], Georgi N. Boshnakov [cre, aut] (ORCID: )", "Maintainer": "Georgi N. Boshnakov ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "timechange": { "Package": "timechange", - "Version": "0.3.0", + "Version": "0.4.0", "Source": "Repository", "Title": "Efficient Manipulation of Date-Times", "Authors@R": "c(person(\"Vitalie\", \"Spinu\", email = \"spinuvit@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Google Inc.\", role = c(\"ctb\", \"cph\")))", @@ -10912,7 +10853,7 @@ "testthat (>= 0.7.1.99)", "knitr" ], - "SystemRequirements": "A system with zoneinfo data (e.g. /usr/share/zoneinfo) as well as a recent-enough C++11 compiler (such as g++-4.8 or later). On Windows the zoneinfo included with R is used.", + "SystemRequirements": "A system with zoneinfo data (e.g. /usr/share/zoneinfo). On Windows the zoneinfo included with R is used.", "BugReports": "https://github.com/vspinu/timechange/issues", "URL": "https://github.com/vspinu/timechange/", "RoxygenNote": "7.2.1", @@ -10923,7 +10864,7 @@ }, "tinytex": { "Package": "tinytex", - "Version": "0.58", + "Version": "0.59", "Source": "Repository", "Type": "Package", "Title": "Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents", @@ -10946,33 +10887,6 @@ "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, - "tseries": { - "Package": "tseries", - "Version": "0.10-61", - "Source": "Repository", - "Title": "Time Series Analysis and Computational Finance", - "Authors@R": "c(person(\"Adrian\", \"Trapletti\", role = \"aut\", email = \"adrian@trapletti.org\"), person(\"Kurt\", \"Hornik\", role = c(\"aut\", \"cre\"), email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(\"Blake\", \"LeBaron\", role = \"ctb\", comment = \"BDS test code\"))", - "Description": "Time series analysis and computational finance.", - "Depends": [ - "R (>= 3.4.0)" - ], - "Imports": [ - "graphics", - "stats", - "utils", - "quadprog", - "zoo", - "quantmod (>= 0.4-9)", - "jsonlite" - ], - "License": "GPL-2 | GPL-3", - "NeedsCompilation": "yes", - "Author": "Adrian Trapletti [aut], Kurt Hornik [aut, cre] (), Blake LeBaron [ctb] (BDS test code)", - "Maintainer": "Kurt Hornik ", - "Repository": "https://packagemanager.posit.co/cran/latest", - "Encoding": "UTF-8", - "Date/Publication": "2026-03-26 14:50:58 UTC" - }, "tweenr": { "Package": "tweenr", "Version": "2.0.3", @@ -11005,7 +10919,7 @@ ], "NeedsCompilation": "yes", "Author": "Thomas Lin Pedersen [aut, cre] ()", - "Repository": "https://packagemanager.posit.co/cran/__linux__/noble/latest" + "Repository": "CRAN" }, "tzdb": { "Package": "tzdb", @@ -11059,15 +10973,14 @@ "NeedsCompilation": "yes", "Author": "Bernhard Pfaff [aut, cre], Eric Zivot [ctb], Matthieu Stigler [ctb]", "Maintainer": "Bernhard Pfaff ", - "Repository": "https://packagemanager.posit.co/cran/latest", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "urlchecker": { "Package": "urlchecker", "Version": "1.0.1", "Source": "Repository", "Title": "Run CRAN URL Checks from Older R Versions", - "Authors@R": "c( person(\"R Core team\", role = \"aut\", comment = \"The code in urltools.R adapted from the tools package\"), person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"R Core team\", role = \"aut\", comment = \"The code in urltools.R adapted from the tools package\"), person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"RStudio\", role = c(\"cph\", \"fnd\")) )", "Description": "Provide the URL checking tools available in R 4.1+ as a package for earlier versions of R. Also uses concurrent requests so can be much faster than the serial versions.", "License": "GPL-3", "URL": "https://github.com/r-lib/urlchecker", @@ -11087,14 +11000,14 @@ "Encoding": "UTF-8", "RoxygenNote": "7.1.2", "NeedsCompilation": "no", - "Author": "R Core team [aut] (The code in urltools.R adapted from the tools package), Jim Hester [aut] (), G\u00e1bor Cs\u00e1rdi [aut, cre], RStudio [cph, fnd]", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "R Core team [aut] (The code in urltools.R adapted from the tools package), Jim Hester [aut] (), Gábor Csárdi [aut, cre], RStudio [cph, fnd]", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "usethis": { "Package": "usethis", - "Version": "3.2.1.9000", - "Source": "GitHub", + "Version": "3.2.1", + "Source": "Repository", "Title": "Automate Package and Project Setup", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Malcolm\", \"Barrett\", , \"malcolmbarrett@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Andy\", \"Teucher\", , \"andy.teucher@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7840-692X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Automate package and project setup tasks that are otherwise performed manually. This includes setting up unit testing, test coverage, continuous integration, Git, 'GitHub', licenses, 'Rcpp', 'RStudio' projects, and more.", @@ -11146,17 +11059,11 @@ "Config/usethis/last-upkeep": "2025-04-22", "Encoding": "UTF-8", "Language": "en-US", - "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", - "RemoteType": "github", - "RemoteHost": "api.github.com", - "RemoteRepo": "usethis", - "RemoteUsername": "r-lib", - "RemoteRef": "HEAD", - "RemoteSha": "4ae5a4327860f2b42852c846e33681ac840ade1c", "NeedsCompilation": "no", "Author": "Hadley Wickham [aut] (ORCID: ), Jennifer Bryan [aut, cre] (ORCID: ), Malcolm Barrett [aut] (ORCID: ), Andy Teucher [aut] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", - "Maintainer": "Jennifer Bryan " + "Maintainer": "Jennifer Bryan ", + "Repository": "CRAN" }, "utf8": { "Package": "utf8", @@ -11185,16 +11092,16 @@ "Encoding": "UTF-8", "RoxygenNote": "7.3.2.9000", "NeedsCompilation": "yes", - "Author": "Patrick O. Perry [aut, cph], Kirill M\u00fcller [cre] (ORCID: ), Unicode, Inc. [cph, dtc] (Unicode Character Database)", - "Maintainer": "Kirill M\u00fcller ", + "Author": "Patrick O. Perry [aut, cph], Kirill Müller [cre] (ORCID: ), Unicode, Inc. [cph, dtc] (Unicode Character Database)", + "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "uuid": { "Package": "uuid", - "Version": "1.2-1", + "Version": "1.2-2", "Source": "Repository", "Title": "Tools for Generating and Handling of UUIDs", - "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.org, ), Theodore Ts'o [aut, cph] (libuuid)", + "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.org, ORCID: ), Theodore Ts'o [aut, cph] (libuuid)", "Maintainer": "Simon Urbanek ", "Authors@R": "c(person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.org\", ORCID=\"0000-0003-2297-1732\")), person(\"Theodore\",\"Ts'o\", email=\"tytso@thunk.org\", role=c(\"aut\",\"cph\"), comment=\"libuuid\"))", "Depends": [ @@ -11218,13 +11125,13 @@ "URL": "https://vctrs.r-lib.org/, https://github.com/r-lib/vctrs", "BugReports": "https://github.com/r-lib/vctrs/issues", "Depends": [ - "R (>= 3.5.0)" + "R (>= 4.0.0)" ], "Imports": [ "cli (>= 3.4.0)", "glue", "lifecycle (>= 1.0.3)", - "rlang (>= 1.1.0)" + "rlang (>= 1.1.7)" ], "Suggests": [ "bit64", @@ -11244,11 +11151,14 @@ "zeallot" ], "VignetteBuilder": "knitr", + "Config/build/compilation-database": "true", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", "Encoding": "UTF-8", + "KeepSource": "true", "Language": "en-GB", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", "Author": "Hadley Wickham [aut], Lionel Henry [aut], Davis Vaughan [aut, cre], data.table team [cph] (Radix sort based on data.table's forder() and their contribution to R's order()), Posit Software, PBC [cph, fnd]", "Maintainer": "Davis Vaughan ", @@ -11261,7 +11171,7 @@ "Type": "Package", "Title": "Colorblind-Friendly Color Maps for R", "Date": "2024-01-28", - "Authors@R": "c( person(\"Simon\", \"Garnier\", email = \"garnier@njit.edu\", role = c(\"aut\", \"cre\")), person(\"Noam\", \"Ross\", email = \"noam.ross@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Bob\", \"Rudis\", email = \"bob@rud.is\", role = c(\"ctb\", \"cph\")), person(\"Marco\", \"Sciaini\", email = \"sciaini.marco@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Ant\u00f4nio Pedro\", \"Camargo\", role = c(\"ctb\", \"cph\")), person(\"C\u00e9dric\", \"Scherer\", email = \"scherer@izw-berlin.de\", role = c(\"ctb\", \"cph\")) )", + "Authors@R": "c( person(\"Simon\", \"Garnier\", email = \"garnier@njit.edu\", role = c(\"aut\", \"cre\")), person(\"Noam\", \"Ross\", email = \"noam.ross@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Bob\", \"Rudis\", email = \"bob@rud.is\", role = c(\"ctb\", \"cph\")), person(\"Marco\", \"Sciaini\", email = \"sciaini.marco@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Antônio Pedro\", \"Camargo\", role = c(\"ctb\", \"cph\")), person(\"Cédric\", \"Scherer\", email = \"scherer@izw-berlin.de\", role = c(\"ctb\", \"cph\")) )", "Maintainer": "Simon Garnier ", "Description": "Color maps designed to improve graph readability for readers with common forms of color blindness and/or color vision deficiency. The color maps are also perceptually-uniform, both in regular form and also when converted to black-and-white for printing. This package also contains 'ggplot2' bindings for discrete and continuous color and fill scales. A lean version of the package called 'viridisLite' that does not include the 'ggplot2' bindings can be found at .", "License": "MIT + file LICENSE", @@ -11297,17 +11207,17 @@ "BugReports": "https://github.com/sjmgarnier/viridis/issues", "RoxygenNote": "7.3.1", "NeedsCompilation": "no", - "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Ant\u00f4nio Pedro Camargo [ctb, cph], C\u00e9dric Scherer [ctb, cph]", - "Repository": "https://packagemanager.posit.co/cran/__linux__/noble/latest" + "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Antônio Pedro Camargo [ctb, cph], Cédric Scherer [ctb, cph]", + "Repository": "CRAN" }, "viridisLite": { "Package": "viridisLite", - "Version": "0.4.2", + "Version": "0.4.3", "Source": "Repository", "Type": "Package", "Title": "Colorblind-Friendly Color Maps (Lite Version)", - "Date": "2023-05-02", - "Authors@R": "c( person(\"Simon\", \"Garnier\", email = \"garnier@njit.edu\", role = c(\"aut\", \"cre\")), person(\"Noam\", \"Ross\", email = \"noam.ross@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Bob\", \"Rudis\", email = \"bob@rud.is\", role = c(\"ctb\", \"cph\")), person(\"Marco\", \"Sciaini\", email = \"sciaini.marco@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Ant\u00f4nio Pedro\", \"Camargo\", role = c(\"ctb\", \"cph\")), person(\"C\u00e9dric\", \"Scherer\", email = \"scherer@izw-berlin.de\", role = c(\"ctb\", \"cph\")) )", + "Date": "2026-02-03", + "Authors@R": "c( person(\"Simon\", \"Garnier\", email = \"garnier@njit.edu\", role = c(\"aut\", \"cre\")), person(\"Noam\", \"Ross\", email = \"noam.ross@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Bob\", \"Rudis\", email = \"bob@rud.is\", role = c(\"ctb\", \"cph\")), person(\"Marco\", \"Sciaini\", email = \"sciaini.marco@gmail.com\", role = c(\"ctb\", \"cph\")), person(\"Antônio Pedro\", \"Camargo\", role = c(\"ctb\", \"cph\")), person(\"Cédric\", \"Scherer\", email = \"scherer@izw-berlin.de\", role = c(\"ctb\", \"cph\")) )", "Maintainer": "Simon Garnier ", "Description": "Color maps designed to improve graph readability for readers with common forms of color blindness and/or color vision deficiency. The color maps are also perceptually-uniform, both in regular form and also when converted to black-and-white for printing. This is the 'lite' version of the 'viridis' package that also contains 'ggplot2' bindings for discrete and continuous color and fill scales and can be found at .", "License": "MIT + file LICENSE", @@ -11323,20 +11233,20 @@ ], "URL": "https://sjmgarnier.github.io/viridisLite/, https://github.com/sjmgarnier/viridisLite/", "BugReports": "https://github.com/sjmgarnier/viridisLite/issues/", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Ant\u00f4nio Pedro Camargo [ctb, cph], C\u00e9dric Scherer [ctb, cph]", + "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Antônio Pedro Camargo [ctb, cph], Cédric Scherer [ctb, cph]", "Repository": "CRAN" }, "vroom": { "Package": "vroom", - "Version": "1.6.7", + "Version": "1.7.1", "Source": "Repository", "Title": "Read and Write Rectangular Text Data Quickly", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jyl\u00e4nki\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Mikkel\", \"J\u00f8rgensen\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "The goal of 'vroom' is to read and write data (like 'csv', 'tsv' and 'fwf') quickly. When reading it uses a quick initial indexing step, then reads the values lazily , so only the data you actually use needs to be read. The writer formats the data in parallel and writes to disk asynchronously from formatting.", "License": "MIT + file LICENSE", - "URL": "https://vroom.r-lib.org, https://github.com/tidyverse/vroom", + "URL": "https://vroom.tidyverse.org, https://github.com/tidyverse/vroom", "BugReports": "https://github.com/tidyverse/vroom/issues", "Depends": [ "R (>= 4.1)" @@ -11349,7 +11259,7 @@ "hms", "lifecycle (>= 1.0.3)", "methods", - "rlang (>= 0.4.2)", + "rlang (>= 1.1.0)", "stats", "tibble (>= 2.0.0)", "tidyselect", @@ -11394,10 +11304,11 @@ "Encoding": "UTF-8", "Language": "en-US", "RoxygenNote": "7.3.3", + "Config/build/compilation-database": "true", "NeedsCompilation": "yes", - "Author": "Jim Hester [aut] (ORCID: ), Hadley Wickham [aut] (ORCID: ), Jennifer Bryan [aut, cre] (ORCID: ), Shelby Bearrows [ctb], https://github.com/mandreyel/ [cph] (mio library), Jukka Jyl\u00e4nki [cph] (grisu3 implementation), Mikkel J\u00f8rgensen [cph] (grisu3 implementation), Posit Software, PBC [cph, fnd] (ROR: )", + "Author": "Jim Hester [aut] (ORCID: ), Hadley Wickham [aut] (ORCID: ), Jennifer Bryan [aut, cre] (ORCID: ), Shelby Bearrows [ctb], https://github.com/mandreyel/ [cph] (mio library), Jukka Jylänki [cph] (grisu3 implementation), Mikkel Jørgensen [cph] (grisu3 implementation), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Jennifer Bryan ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "waldo": { "Package": "waldo", @@ -11476,7 +11387,7 @@ "Source": "Repository", "Title": "'WebSocket' Client Library", "Description": "Provides a 'WebSocket' client interface for R. 'WebSocket' is a protocol for low-overhead real-time communication: .", - "Authors@R": "c( person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@posit.co\"), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@posit.co\"), person(\"Alan\", \"Dipert\", role = \"aut\"), person(\"Barbara\", \"Borges\", role = \"aut\"), person(family = \"Posit, PBC\", role = \"cph\"), person(\"Peter\", \"Thorson\", role = c(\"ctb\", \"cph\"), comment = \"WebSocket++ library\"), person(\"Ren\u00e9\", \"Nyffenegger\", role = c(\"ctb\", \"cph\"), comment = \"Base 64 library\"), person(\"Micael\", \"Hildenborg\", role = c(\"ctb\", \"cph\"), comment = \"SHA1 library\"), person(family = \"Aladdin Enterprises\", role = \"cph\", comment = \"MD5 library\"), person(\"Bjoern\", \"Hoehrmann\", role = c(\"ctb\", \"cph\"), comment = \"UTF8 Validation library\"))", + "Authors@R": "c( person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@posit.co\"), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@posit.co\"), person(\"Alan\", \"Dipert\", role = \"aut\"), person(\"Barbara\", \"Borges\", role = \"aut\"), person(family = \"Posit, PBC\", role = \"cph\"), person(\"Peter\", \"Thorson\", role = c(\"ctb\", \"cph\"), comment = \"WebSocket++ library\"), person(\"René\", \"Nyffenegger\", role = c(\"ctb\", \"cph\"), comment = \"Base 64 library\"), person(\"Micael\", \"Hildenborg\", role = c(\"ctb\", \"cph\"), comment = \"SHA1 library\"), person(family = \"Aladdin Enterprises\", role = \"cph\", comment = \"MD5 library\"), person(\"Bjoern\", \"Hoehrmann\", role = c(\"ctb\", \"cph\"), comment = \"UTF8 Validation library\"))", "License": "GPL-2", "Encoding": "UTF-8", "ByteCompile": "true", @@ -11500,7 +11411,7 @@ ], "VignetteBuilder": "knitr", "NeedsCompilation": "yes", - "Author": "Winston Chang [aut, cre], Joe Cheng [aut], Alan Dipert [aut], Barbara Borges [aut], Posit, PBC [cph], Peter Thorson [ctb, cph] (WebSocket++ library), Ren\u00e9 Nyffenegger [ctb, cph] (Base 64 library), Micael Hildenborg [ctb, cph] (SHA1 library), Aladdin Enterprises [cph] (MD5 library), Bjoern Hoehrmann [ctb, cph] (UTF8 Validation library)", + "Author": "Winston Chang [aut, cre], Joe Cheng [aut], Alan Dipert [aut], Barbara Borges [aut], Posit, PBC [cph], Peter Thorson [ctb, cph] (WebSocket++ library), René Nyffenegger [ctb, cph] (Base 64 library), Micael Hildenborg [ctb, cph] (SHA1 library), Aladdin Enterprises [cph] (MD5 library), Bjoern Hoehrmann [ctb, cph] (UTF8 Validation library)", "Maintainer": "Winston Chang ", "Repository": "CRAN" }, @@ -11528,7 +11439,7 @@ "Version": "3.0.2", "Source": "Repository", "Title": "Run Code 'With' Temporarily Modified Global State", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Kirill\", \"M\u00fcller\", , \"krlmlr+r@mailbox.org\", role = \"aut\"), person(\"Kevin\", \"Ushey\", , \"kevinushey@gmail.com\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jennifer\", \"Bryan\", role = \"ctb\"), person(\"Richard\", \"Cotton\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Kirill\", \"Müller\", , \"krlmlr+r@mailbox.org\", role = \"aut\"), person(\"Kevin\", \"Ushey\", , \"kevinushey@gmail.com\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jennifer\", \"Bryan\", role = \"ctb\"), person(\"Richard\", \"Cotton\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "A set of functions to run code 'with' safely and temporarily modified global state. Many of these functions were originally a part of the 'devtools' package, this provides a simple package with limited dependencies to provide access to these functions.", "License": "MIT + file LICENSE", "URL": "https://withr.r-lib.org, https://github.com/r-lib/withr#readme", @@ -11557,17 +11468,17 @@ "RoxygenNote": "7.3.2", "Collate": "'aaa.R' 'collate.R' 'connection.R' 'db.R' 'defer-exit.R' 'standalone-defer.R' 'defer.R' 'devices.R' 'local_.R' 'with_.R' 'dir.R' 'env.R' 'file.R' 'language.R' 'libpaths.R' 'locale.R' 'makevars.R' 'namespace.R' 'options.R' 'par.R' 'path.R' 'rng.R' 'seed.R' 'wrap.R' 'sink.R' 'tempfile.R' 'timezone.R' 'torture.R' 'utils.R' 'with.R'", "NeedsCompilation": "no", - "Author": "Jim Hester [aut], Lionel Henry [aut, cre], Kirill M\u00fcller [aut], Kevin Ushey [aut], Hadley Wickham [aut], Winston Chang [aut], Jennifer Bryan [ctb], Richard Cotton [ctb], Posit Software, PBC [cph, fnd]", + "Author": "Jim Hester [aut], Lionel Henry [aut, cre], Kirill Müller [aut], Kevin Ushey [aut], Hadley Wickham [aut], Winston Chang [aut], Jennifer Bryan [ctb], Richard Cotton [ctb], Posit Software, PBC [cph, fnd]", "Maintainer": "Lionel Henry ", "Repository": "CRAN" }, "xfun": { "Package": "xfun", - "Version": "0.55", + "Version": "0.57", "Source": "Repository", "Type": "Package", "Title": "Supporting Functions for Packages Maintained by 'Yihui Xie'", - "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\", \"cph\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Daijiang\", \"Li\", role = \"ctb\"), person(\"Xianying\", \"Tan\", role = \"ctb\"), person(\"Salim\", \"Br\u00fcggemann\", role = \"ctb\", email = \"salim-b@pm.me\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person() )", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\", \"cph\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Daijiang\", \"Li\", role = \"ctb\"), person(\"Xianying\", \"Tan\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", role = \"ctb\", email = \"salim-b@pm.me\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person() )", "Description": "Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.", "Depends": [ "R (>= 3.2.0)" @@ -11596,8 +11507,7 @@ "magick", "yaml", "data.table", - "qs2", - "qs" + "qs2" ], "License": "MIT + file LICENSE", "URL": "https://github.com/yihui/xfun", @@ -11606,13 +11516,13 @@ "RoxygenNote": "7.3.3", "VignetteBuilder": "litedown", "NeedsCompilation": "yes", - "Author": "Yihui Xie [aut, cre, cph] (ORCID: , URL: https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Br\u00fcggemann [ctb] (ORCID: ), Christophe Dervieux [ctb]", + "Author": "Yihui Xie [aut, cre, cph] (ORCID: , URL: https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (ORCID: ), Christophe Dervieux [ctb]", "Maintainer": "Yihui Xie ", - "Repository": "https://packagemanager.posit.co/cran/latest" + "Repository": "CRAN" }, "xml2": { "Package": "xml2", - "Version": "1.5.1", + "Version": "1.5.2", "Source": "Repository", "Title": "Parse XML", "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", email = \"jeroenooms@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Foundation\", role = \"ctb\", comment = \"Copy of R-project homepage cached as example\") )", @@ -11655,8 +11565,8 @@ "Version": "1.0.5", "Source": "Repository", "Title": "Parse Data of 'R' Code as an 'XML' Tree", - "Author": "G\u00e1bor Cs\u00e1rdi", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Gábor Csárdi", + "Maintainer": "Gábor Csárdi ", "Description": "Convert the output of 'utils::getParseData()' to an 'XML' tree, that one can search via 'XPath', and easier to manipulate in general.", "License": "MIT + file LICENSE", "LazyData": "true", @@ -11680,7 +11590,7 @@ "Version": "1.0.1", "Source": "Repository", "Title": "Open System Files, 'URLs', Anything", - "Authors@R": "c( person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Fathi\", \"Boudra\", role = \"aut\"), person(\"Rex\", \"Dieter\", role = \"aut\"), person(\"Kevin\", \"Krammer\", role = \"aut\"), person(\"Jeremy\", \"White\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Fathi\", \"Boudra\", role = \"aut\"), person(\"Rex\", \"Dieter\", role = \"aut\"), person(\"Kevin\", \"Krammer\", role = \"aut\"), person(\"Jeremy\", \"White\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Cross platform solution to open files, directories or 'URLs' with their associated programs.", "License": "MIT + file LICENSE", "URL": "https://github.com/r-lib/xopen#readme, https://r-lib.github.io/xopen/", @@ -11700,8 +11610,8 @@ "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "NeedsCompilation": "no", - "Author": "G\u00e1bor Cs\u00e1rdi [aut, cre], Fathi Boudra [aut], Rex Dieter [aut], Kevin Krammer [aut], Jeremy White [aut], Posit Software, PBC [cph, fnd]", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Gábor Csárdi [aut, cre], Fathi Boudra [aut], Rex Dieter [aut], Kevin Krammer [aut], Jeremy White [aut], Posit Software, PBC [cph, fnd]", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "xplorerr": { @@ -11756,21 +11666,23 @@ }, "xtable": { "Package": "xtable", - "Version": "1.8-4", + "Version": "1.8-8", "Source": "Repository", - "Date": "2019-04-08", + "Date": "2026-02-20", "Title": "Export Tables to LaTeX or HTML", "Authors@R": "c(person(\"David B.\", \"Dahl\", role=\"aut\"), person(\"David\", \"Scott\", role=c(\"aut\",\"cre\"), email=\"d.scott@auckland.ac.nz\"), person(\"Charles\", \"Roosen\", role=\"aut\"), person(\"Arni\", \"Magnusson\", role=\"aut\"), person(\"Jonathan\", \"Swinton\", role=\"aut\"), person(\"Ajay\", \"Shah\", role=\"ctb\"), person(\"Arne\", \"Henningsen\", role=\"ctb\"), person(\"Benno\", \"Puetz\", role=\"ctb\"), person(\"Bernhard\", \"Pfaff\", role=\"ctb\"), person(\"Claudio\", \"Agostinelli\", role=\"ctb\"), person(\"Claudius\", \"Loehnert\", role=\"ctb\"), person(\"David\", \"Mitchell\", role=\"ctb\"), person(\"David\", \"Whiting\", role=\"ctb\"), person(\"Fernando da\", \"Rosa\", role=\"ctb\"), person(\"Guido\", \"Gay\", role=\"ctb\"), person(\"Guido\", \"Schulz\", role=\"ctb\"), person(\"Ian\", \"Fellows\", role=\"ctb\"), person(\"Jeff\", \"Laake\", role=\"ctb\"), person(\"John\", \"Walker\", role=\"ctb\"), person(\"Jun\", \"Yan\", role=\"ctb\"), person(\"Liviu\", \"Andronic\", role=\"ctb\"), person(\"Markus\", \"Loecher\", role=\"ctb\"), person(\"Martin\", \"Gubri\", role=\"ctb\"), person(\"Matthieu\", \"Stigler\", role=\"ctb\"), person(\"Robert\", \"Castelo\", role=\"ctb\"), person(\"Seth\", \"Falcon\", role=\"ctb\"), person(\"Stefan\", \"Edwards\", role=\"ctb\"), person(\"Sven\", \"Garbade\", role=\"ctb\"), person(\"Uwe\", \"Ligges\", role=\"ctb\"))", "Maintainer": "David Scott ", "Imports": [ "stats", - "utils" + "utils", + "methods" ], "Suggests": [ "knitr", - "plm", "zoo", - "survival" + "survival", + "glue", + "tinytex" ], "VignetteBuilder": "knitr", "Description": "Coerce data to LaTeX and HTML tables.", @@ -11783,41 +11695,6 @@ "NeedsCompilation": "no", "Author": "David B. Dahl [aut], David Scott [aut, cre], Charles Roosen [aut], Arni Magnusson [aut], Jonathan Swinton [aut], Ajay Shah [ctb], Arne Henningsen [ctb], Benno Puetz [ctb], Bernhard Pfaff [ctb], Claudio Agostinelli [ctb], Claudius Loehnert [ctb], David Mitchell [ctb], David Whiting [ctb], Fernando da Rosa [ctb], Guido Gay [ctb], Guido Schulz [ctb], Ian Fellows [ctb], Jeff Laake [ctb], John Walker [ctb], Jun Yan [ctb], Liviu Andronic [ctb], Markus Loecher [ctb], Martin Gubri [ctb], Matthieu Stigler [ctb], Robert Castelo [ctb], Seth Falcon [ctb], Stefan Edwards [ctb], Sven Garbade [ctb], Uwe Ligges [ctb]" }, - "xts": { - "Package": "xts", - "Version": "0.14.1", - "Source": "Repository", - "Type": "Package", - "Title": "eXtensible Time Series", - "Authors@R": "c( person(given=c(\"Jeffrey\",\"A.\"), family=\"Ryan\", role=c(\"aut\",\"cph\")), person(given=c(\"Joshua\",\"M.\"), family=\"Ulrich\", role=c(\"cre\",\"aut\"), email=\"josh.m.ulrich@gmail.com\"), person(given=\"Ross\", family=\"Bennett\", role=\"ctb\"), person(given=\"Corwin\", family=\"Joy\", role=\"ctb\") )", - "Depends": [ - "R (>= 3.6.0)", - "zoo (>= 1.7-12)" - ], - "Imports": [ - "methods" - ], - "LinkingTo": [ - "zoo" - ], - "Suggests": [ - "timeSeries", - "timeDate", - "tseries", - "chron", - "tinytest" - ], - "LazyLoad": "yes", - "Description": "Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.", - "License": "GPL (>= 2)", - "URL": "https://joshuaulrich.github.io/xts/, https://github.com/joshuaulrich/xts", - "BugReports": "https://github.com/joshuaulrich/xts/issues", - "Encoding": "UTF-8", - "NeedsCompilation": "yes", - "Author": "Jeffrey A. Ryan [aut, cph], Joshua M. Ulrich [cre, aut], Ross Bennett [ctb], Corwin Joy [ctb]", - "Maintainer": "Joshua M. Ulrich ", - "Repository": "https://packagemanager.posit.co/cran/latest" - }, "yaml": { "Package": "yaml", "Version": "2.3.12", @@ -11849,7 +11726,7 @@ "Version": "2.3.3", "Source": "Repository", "Title": "Cross-Platform 'zip' Compression", - "Authors@R": "c( person(\"G\u00e1bor\", \"Cs\u00e1rdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kuba\", \"Podg\u00f3rski\", role = \"ctb\"), person(\"Rich\", \"Geldreich\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kuba\", \"Podgórski\", role = \"ctb\"), person(\"Rich\", \"Geldreich\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Cross-Platform 'zip' Compression Library. A replacement for the 'zip' function, that does not require any additional external tools on any platform.", "License": "MIT + file LICENSE", "URL": "https://github.com/r-lib/zip, https://r-lib.github.io/zip/", @@ -11868,8 +11745,8 @@ "Encoding": "UTF-8", "RoxygenNote": "7.3.2.9000", "NeedsCompilation": "yes", - "Author": "G\u00e1bor Cs\u00e1rdi [aut, cre], Kuba Podg\u00f3rski [ctb], Rich Geldreich [ctb], Posit Software, PBC [cph, fnd] (ROR: )", - "Maintainer": "G\u00e1bor Cs\u00e1rdi ", + "Author": "Gábor Csárdi [aut, cre], Kuba Podgórski [ctb], Rich Geldreich [ctb], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "zoo": { diff --git a/renv/activate.R b/renv/activate.R index f42fe916e..6487d062e 100644 --- a/renv/activate.R +++ b/renv/activate.R @@ -3,7 +3,7 @@ local({ # the requested version of renv version <- "1.2.2" - attr(version, "md5") <- "32f21c37db37534c7968cbcf3dbb3157" + attr(version, "md5") <- "bb69b6403b1bad0442657e9e8e57cc83" attr(version, "sha") <- NULL # the project directory