ChangeLog

2026-05-12  Per Abrahamsen  <pa@plen.ku.dk>

	* src/programs/program_spawn.C (run_cmds, prepare_cmd): Move
	create directory from prapare to run.

	* src/util/path.C (Path::get_daisy_home): Use
	'boost::dll:program_location' to find exe on all platform.
	Special case build directory.

2026-05-11  Per Abrahamsen  <pa@plen.ku.dk>

	* src/windows/windows_util.C (get_daisy_home_from_exe_path): Allow
	"daisy-bin.exe" as alternative daisy.exe name.

2026-05-06  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/soil/hydraulic_hyprop.C (Cw2): Remove per mode
	scaling.  Thanks copilot.

2026-04-28  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/upper_boundary/surface/max_exfiltration.C
	(steady-state): New model.

2026-04-27  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/upper_boundary/surface/surface_std.C
	(FORCED_BOUNDARY): Removed.
	(max_exfiltration): New parameter.
	(ME): New log variable.

	* include/daisy/upper_boundary/weather/weather.h:
	* include/daisy/upper_boundary/weather/wsource_weather.h:
	* src/daisy/upper_boundary/weather/wsource_weather.C:
	(WSourceWeather::h_atm): New function.

2026-04-26  Per Abrahamsen  <pa@plen.ku.dk>

	* include/daisy/upper_boundary/surface/max_exfiltration.h:
	* src/daisy/upper_boundary/surface/max_exfiltration.C
	(max_exfiltration): New component.

2026-04-23  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/soil/hydraulic.C, include/daisy/soil/soil/hydraulic.h:
	(Theta_min): New function.
	* src/daisy/soil/horheat.C (initialize): Use it.
	* src/daisy/soil/soil.C (Theta_res): Ditto.
	* src/daisy/soil/hydraulic_linear.C (initialize): Ditto.
	(hysteresis): Ditto.

2026-04-08  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/manager/action_tillage.C (remove_litter): New action.
	* include/daisy/column.h:
	* src/daisy/column_std.C:
	* include/daisy/field.h:
	* src/daisy/field.C (remove_litter, litter_DM): New functions.

2026-04-01  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/organic_matter/organic_std.C (reset_logs): New function.
	(tick, initialize): Call it.

2026-03-23  Per Abrahamsen  <pa@plen.ku.dk>


	* src/daisy/organic_matter/organic_none.C (get_org_c_at):
	* src/daisy/organic_matter/organic_std.C (get_org_c_at):
	* include/daisy/organic_matter/organic.h: New function.

2025-09-10  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/upper_boundary/bioclimate/svat_none.C
	(SVAT_NoneSyntax): Fix description (thanks sfs).

2025-06-24  Per Abrahamsen  <pa@plen.ku.dk>

	* txt/daisy.bib (Constanza2019x,Brusseau2021x,Jakobsen2025x)
	(Gauthier2024): New entries for PFAS.

2025-06-02  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log.dai ("Surface Chemicals"): Typo (decomposes instead of
	decomposed).

	* src/daisy/chemicals/reaction_sorption.C (tick_soil): Wrong const
	qualifier, never called.

2025-05-26  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/chemicals/adsorption_guo2020.C: New model.
	* src/daisy/chemicals/awi.C (Costanza2008x): New model.

2025-05-25  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/chemicals/adsorption_Python.C (area_AWI): New parameter.
	* src/daisy/chemicals/adsorption_linear.C (K_AWI): New parameter.
	* src/daisy/column_std.C (awi): New parameter.
	* all: Update.

2025-05-23  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/chemicals/awi.C: New component.

2025-05-21  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/upper_boundary/bioclimate/bioclimate_std.C
	(deposition): Made it a list.

	* src/daisy/upper_boundary/weather/deposition.C
	(DepositionGundersen): Delete model.
	(const): New model.

2025-05-19  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/chemicals/adsorption_Python.C (extra): New parameter.

2025-04-25  Per Abrahamsen  <pa@plen.ku.dk>

	* CMakeLists.txt (VERSION): 7.0.9.

	* src/daisy/chemicals/denprod_Parton1996.C (split): Use M, not
	C. Thanks Tobias Kloffel.

2025-03-17  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/column_std.C (OrganicMatter): Make 'SOM2025' default.
	* src/daisy/organic_matter/organic_std.C (SOM2000, SOM2025): New
	parameterization.
	(default): Don't give 'smb' a default value.
	* src/daisy/organic_matter/bioincorporation.C (respiration): Set
	to zero by default.

2025-03-11  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/organic_matter/dom.C: Use rate.

	* lib/fertilizer.dai (slurry): Use Rate.
	* lib/chemistry-base.dai (solid, classic, Tracer, colloid): Ditto.
	* lib/chemistry.dai: Ditto.

2025-03-10  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log-std.dai ("Field chemical", "Field nitrogen"):
	* lib/log.dai ("Surface Chemicals"): Renamed 'litter_decomposed
	and 'surface_decomposed'.
	* src/daisy/chemicals/chemical_std.C: Ditto.
	(M_secondary): Removed duplicate definition.
	* src/daisy/soil/hydraulic_B_C_inverse.C (Theta_sat): Ditto.

2025-03-07  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/upper_boundary/weather/wsource_weather.C (load_frame):
	Remove duplicate declaration of "sunrise".

	* src/daisy/chemicals/chemical_std.C (canopy_dissipation_rate):
	Use Rate.

	* src/object_model/rate.C (Rate::declare_optional): New function.
	(Rate::value): Overloaded function with default value.

	* src/daisy/chemicals/chemical_std.C
	(canopy_dissipation_rate_coefficient): Removed obsolete parameter.

	* include/object_model/rate.h:
	* src/object_model/rate.C (Rate::set_halftime_cited): New function.

2025-03-06  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/organic_matter/om.C (turnover): Combine rate and
	halftime.
	* src/daisy/organic_matter/som.C:
	* src/daisy/organic_matter/aom.C:
	* src/object_model/parser_file.C (load_list): Handle '*_rate' and
	'*_halftime' parameters specially.

2025-03-04  Per Abrahamsen  <pa@plen.ku.dk>

	* include/daisy/chemicals/adsorption.h:
	* src/daisy/chemicals/adsorption.C (M_to_C_bisect):
	New function.
	* src/daisy/chemicals/adsorption_Python.C (M_to_C): Use
	'M_to_C_bisect' if no Python function is specified.

2025-03-03  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/chemicals/reaction_Python.C: New model.
	* src/daisy/chemicals/CMakeLists.txt: Add it.

2025-02-28  Per Abrahamsen  <pa@plen.ku.dk>

	* include/daisy/chemicals/reaction.h:
	* include/daisy/chemicals/chemistry.h (initialize): Take
	'chemistry' parameter.

2025-02-10  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/upper_boundary/bioclimate/resistance.C
	(Resistance::T_c): Fix parenthesis.

2025-01-29  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/crop/stomatacon_SHA.C (MNA): Mark obsolete.

	* src/daisy/crop/root/rubiscoNdist_DPF.C (f_photo): Removed
	parameter, redundant as cropN is already set to rubiscoN.

	* src/daisy/upper_boundary/bioclimate/difrad_DPF.C (fa): Fix
	default value and description.

	* src/daisy/upper_boundary/vegetation/vegetation_crops.C
	(LAIvsDAY): Switch domain and range.

2025-01-28  Per Abrahamsen  <pa@plen.ku.dk>

	* src/programs/program_astdump.C: New model.

	* src/object_model/units.C (Units::get_convertion): Suppress false
	positive "Wdangling-reference" warning.

2025-01-27  Per Abrahamsen  <pa@plen.ku.dk>

	* src/object_model/model.C (Model::obsolete)
	(Model::declare_obsolete): New functions.
	* src/daisy/lower_boundary/groundwater_static.C (load_frame): Use them.
	* src/daisy/output/log_alist.C (LogSubmodel::close_unnamed): Make
	sentry a symbol.
	* src/object_model/parser_file.C (load_list): Support them.

2025-01-17  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/chemicals/adsorption_langmuir.C (C_to_M, M_to_C): Fix.

2025-01-16  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log.dai ("Drain Sink Water", "Biopore Drain Sink Water"):
	Fix units.
	("Drain Sink NO3", "Drain Sink NH4"): Remove dimension.
	("Fertilizer"): Add spec.

2024-11-21  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/chemicals/nitrification_solute.C (tick): Multiply with
	Theta.
	* include/daisy/chemicals/nitrification.h: Update signature.
	* src/daisy/chemicals/nitrification_soil.C:
	* src/daisy/chemicals/reaction_nit.C (tick_soil): Pass Theta.
	* include/daisy/soil/soil.h:
	* src/daisy/soil/horizon.C:

2024-10-30  Per Abrahamsen  <pa@plen.ku.dk>

	* include/daisy/soil/soil.h:
	* src/daisy/soil/soil.C (Soil::texture_fractile): New function.


	* include/daisy/soil/texture.h:
	* src/daisy/chemicals/nitrification_soil.C:
	* src/daisy/chemicals/reaction_nit.C (tick_soil): Pass Theta.
	* include/daisy/soil/soil.h:
	* src/daisy/soil/horizon.C:

2024-10-30  Per Abrahamsen  <pa@plen.ku.dk>

	* include/daisy/soil/soil.h:
	* src/daisy/soil/soil.C (Soil::texture_fractile): New function.

	* include/daisy/soil/texture.h:
	* src/daisy/soil/texture.C (Texture::fractile): New function.

	* src/daisy/chemicals/adsorption.h:
	* src/daisy/chemicals/adsorption.C (AdsorptionLinear): Removed.
	* src/daisy/chemicals/adsorption_linear.C (AdsorptionLinearOld):
	Renamed to AdsorptionLinear.

2024-10-22  Per Abrahamsen  <pa@plen.ku.dk>

	* src/util/function_Python.C: Better error messages.

2024-10-21  Per Abrahamsen  <pa@plen.ku.dk>

	* src/util/function_Python.C: New function model.

2024-10-18  Per Abrahamsen  <pa@plen.ku.dk>

	* src/object_model/parameter_types/number_apply.C: New model.
	* src/object_model/toplevel.C (Toplevel::run): Start python.

2024-10-07  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/crop/root/rootdens_local.C
	(RootdensLocal::internal_growth): Handle I_tot == 0.

2024-09-18  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/crop/production.C (ExfoliationFac): Fix unit.

2024-06-20  Per Abrahamsen  <pa@plen.ku.dk>

	* src/daisy/upper_boundary/bioclimate/svat_ssoc.C
	(SVAT_SSOC::calculate_conductances): Fix argument order (reported
	by Delhez Laura <Laura.Delhez@uliege.be>).

2024-05-01  Per Abrahamsen  <pa@plen.ku.dk>

	* test/dai-unit-tests/CMakeLists.txt: Change 'dai_file' to 'name'
	* src/object_model/oldunits.C (Oldunits::standard_conversions):
	Change "CO_2" to "CO2".

2024-03-20  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.47 released.

2024-03-20  Per Abrahamsen  <pa@plen.ku.dk>

	* adsorption_vS_S.C (vS_S_old): Renamed from "vS_S".
	(vS_S): Made S_planar, S_edge, K_planar, K_edge parameters.
	V_planar, V_edge: unit should per volume space, not per volume soil.
	(vS_S_Hansen): Old parameters.
	(vS_S_Styczen): New parameters.

2024-03-18  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.46 released.

2024-03-18  Per Abrahamsen  <pa@plen.ku.dk>

	* parser_file.C (erase): New top level keyword.

	* clayom.C (load_frame): New function.
	* clayom_biomod.C ("cite"): Set value.

2024-02-27  Per Abrahamsen  <pa@plen.ku.dk>

	* reaction_shoot.C (load_frame): Added second citation.

2024-01-22  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.45 released.

2024-01-22  Per Abrahamsen  <pa@plen.ku.dk>

	* secondary.C (use_secondary): Now supported by the 'pressure'
	model.

2024-01-19  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log.dai ("Groundwater"): Fix 'h_aquifer' path.

2023-12-07  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_B_C_inverse.C (Theta_wp): Use 20 um instead of 50 um
	as silt limit.

2023-11-21  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.44 released.

2023-11-21  Per Abrahamsen  <pa@plen.ku.dk>

	* wsource_weather.C (tick_weather): Force new day if daily values
	are uninitialized.

2023-11-02  Per Abrahamsen  <pa@plen.ku.dk>

	* program_document.C: Now includes graphs for build-in PLFs.

	* txt/Makefile (reference.ps): No longer generate.

2023-10-31  Per Abrahamsen  <pa@plen.ku.dk>

	* program_document.C, printer_file.C: Support Attribute::Function.
	* program_document.C (inherited_entries): Avoid erasing iterator.

2023-10-30  Per Abrahamsen  <pa@plen.ku.dk>

	* abiotic.C (T_scale): New base function model.
	(T_min, T_nit): New function models.
	* units.C, units.h (Units::dgC): New function.

2023-10-24  Per Abrahamsen  <pa@plen.ku.dk>

	* Makefile (COMPONENTS): Add it.

2023-10-23  Per Abrahamsen  <pa@plen.ku.dk>

	* type.h, type.C (TypeFunction): New class.
	* frame.h, frame.C (declare_function): New function.
	* attribute.h, attribute.C (Function): New type.
	* program_document.C: Update caller.

2023-10-13  Per Abrahamsen  <pa@plen.ku.dk>

	* select_array.C, select_quiver.C, select.C, select.h (array_tag):
	Removed.
	* log_table.C (DestinationTable::column_tag): Update caller.

	* time.C (operator=): Explicitly implicit.

2023-09-18  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.43 released.

2023-09-18  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_table.C (M): Use generic code.

2023-08-29  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.42 released.

2023-08-29  Per Abrahamsen  <pa@plen.ku.dk>

	* wsource_table.C, wsource_table.h, weatherdata.C, weatherdata.h
	(GlobRadScale): New keyword.

	* hydraulic.C (print_M): New parameter to the hydraulic program.

2023-08-28  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_table.C (K_sat, Theta_sat): New optional parameters.

2023-08-04  Per Abrahamsen  <pa@plen.ku.dk>

	* rootdens_local.C: New model.
	* Makefile (MODELS): Add it.

2023-06-30  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.41 released.

2023-06-30  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_hyprop.C (K_vap): Handle numerical noise near saturation.

2023-06-29  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.40 released.

2023-06-29  Per Abrahamsen  <pa@plen.ku.dk>

	* plf.C, plf.h (integrate_stupidly_2): Slightly less stupid integration.
	* hydraulic_table.C: Use it.

2023-06-28  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_hyprop.C (Theta, KT, h): Handle h=0, Theta=Theta_sat case.

2023-06-16  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.39 released.

2023-06-16  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic.C (K_to_M): Avoid calling K, call K20.

2023-06-15  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.38 released.

2023-06-15  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_hyprop.C (K_vap): Fix edge case near saturation.

	* Version 6.37 released.

2023-06-15  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_hyprop.C (Cw2): Fix sign.

2023-05-28  Per Abrahamsen  <pa@plen.ku.dk>

	* program_nwaps.C: Removed unused parameter 'combine_units'.

2023-05-03  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.36 released.

2023-04-26  Per Abrahamsen  <pa@plen.ku.dk>

	* program_nwaps.C (stdev, stderr): New summary lines.

2023-04-24  Per Abrahamsen  <pa@plen.ku.dk>

	* Makefile (SETUPDIR): Use $(HOME).

2023-04-23  Per Abrahamsen  <pa@plen.ku.dk>

	* program_nwaps.C: New model.
	* Makefile (MODELS): Add it.

2023-04-21  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.35 released.

2023-04-18  Per Abrahamsen  <pa@plen.ku.dk>

	* path.C, path.h (set_input_directory): New function.
	* program_spawn.C: Use it.

2023-04-17  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.34 released.

	* Makefile (native, portable, windows, windows-same, release)
	(release-same): (and others) Switch to msys2 as default build
	environment on Windows.

2023-04-12  Per Abrahamsen  <pa@plen.ku.dk>

	* mathlib.h (M_LN10): Define if undefined.

2023-03-31  Per Abrahamsen  <pa@plen.ku.dk>

	* program_spawn.C: New model.
	* Makefile (MODELS): Added it.

2023-03-22  Per Abrahamsen  <pa@plen.ku.dk>

	* action_markvand.C: Made it work again.
	(solute): New parameter.

2023-03-06  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic.h, hydraulic.C (K): Made it private.
	(KT, KT20): New public functions.
	* all: Update callers.

2023-02-27  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_hyprop.C: New model.

2022-11-03  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.33 released.

2022-11-03  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_M_vGBS.C: Stop adding points to pF_Theta once max
	Theta has been reached.

2022-08-09  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.32 released.

2022-08-08  Per Abrahamsen  <pa@plen.ku.dk>

	* partition.C, partition.h (tick): New 'current_WRoot' argument.

2022-04-26  Per Abrahamsen  <pa@plen.ku.dk>

	* program_weather.C (run): Off by one error.

2022-04-06  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.31 released.

2022-04-06  Per Abrahamsen  <pa@plen.ku.dk>

	* bioclimate_std.C (pond_water_to_snow): New log variable.
	* lib/log.dai ("Surface water"): Log it.

2022-03-26  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.30 released.

2022-03-25  Per Abrahamsen  <pa@plen.ku.dk>

	* surface_simple.C (simple, const_flux, none, const_pressure):
	New base models and parameterizations.
	* Makefile (MODELS): Add it.
	* surface_std.C (forced_flux, forced_pressure): Removed parameters.
	* surface_source.C (source_flux): New model.
	* Makefile (MODELS): Add it.

2022-03-24  Per Abrahamsen  <pa@plen.ku.dk>

	* surface.C, surface.h, surface_std.C: Made it a component.
	* Makefile (SUBMODELS, COMPONENTS): Update.
	* column_std.C: Update caller.

	* lib/log-std.dai ("Field water"): Update caller.

2022-03-23  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.29 released.

2022-03-23  Per Abrahamsen  <pa@plen.ku.dk>

	* condition_time.C ("microsecond", "second", "minute"): New
	models.

2022-03-14  Per Abrahamsen  <pa@plen.ku.dk>

	* crop_std.C, crop_simple.C (NIRext): Return NIRext, not PARext.
	* crop_std.C, crop_simple.C (NIRref): Ditto.

2022-03-13  Per Abrahamsen  <pa@plen.ku.dk>

	* photo_FCC3.C (find_we): Divide by 4 as per Eq 4.

2022-02-09  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.28 released.

2022-02-09  Per Abrahamsen  <pa@plen.ku.dk>

	* snow.C: Bug fixes.

2022-02-08  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/wwheat.dai ("Winter Wheat JG"): Disable 'T_factor'.

	* seed_release.C (T_factor): New parameter.

	* seed.h, seed_LAI.C, seed_release.C (release_C): Add 'T' parameter.
	* crop_std.C (tick): Update caller.

2022-01-31  Per Abrahamsen  <pa@plen.ku.dk>

	* snow.C (m1): Fix unit.
	(tick): Convert Si and q_h to J/h.
	(tick): age should grow with dt, not 1 [h].
	(Psa): Changed unit to [mm/h].

2021-11-22  Per Abrahamsen  <pa@plen.ku.dk>

	* assertion.C: Limit number of messages from same line.

2021-10-11  Per Abrahamsen  <pa@plen.ku.dk>

	* sample/init-soil.dai (JB1_init_Cosby): Fix wrong comment.

	* sample/sample.dai: Excplicitly input required files.

	* sample/irrigation.dai: The "description" parameter no longer
	exist.

2021-10-07  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.27 released.

2021-10-07  Per Abrahamsen  <pa@plen.ku.dk>

	* bioclimate_std.C (litter_pond_up, litter_soil_up): New log variables.

2021-10-04  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.26 released.

2021-10-04  Per Abrahamsen  <pa@plen.ku.dk>

	* litter_mulch.C (tick): Divide by Theta_sat to find R.

2021-10-01  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.25 released.

2021-10-01  Per Abrahamsen  <pa@plen.ku.dk>

	* litter.C, litter.h (water_protected): New virtual member.
	* litter_mulch.C: Implement it.
	(evaporate_depth): New parameter.
	(protected_water): New log variable.
	* bioclimate_std.C (WaterDistribution): Use it.

2021-09-24  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.24 released.

2021-09-17  Per Abrahamsen  <pa@plen.ku.dk>

	* weather.h, wsource_weather.C, wsource_weather.h:
	(has_daily_vapor_pressure): New member function.
	* bioclimate_std.C: Use it.
	* pet_FAO_PM.C (check): Ditto.

2021-09-16  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.23 released.

2021-09-16  Per Abrahamsen  <pa@plen.ku.dk>

	* root_system.C, root_system.h (DensityDSFac): New parameter.
	(set_density): Use it.
	(initialize): New DS parameter.
	* crop_std.C, crop_simple.C, vegetation_afforestation.C:
	* vegetation_permanent.C (initialize): Adjust caller.

2021-08-25  Per Abrahamsen  <pa@plen.ku.dk>

	* net_radiation.C (brunt): Now takes 'A' and 'B' parameters from
	the cited article.

	* bioclimate_std.C (L_i0): Removed log variable.

2021-08-19  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.22 released.

2021-08-19  Per Abrahamsen  <pa@plen.ku.dk>

	* cloudiness.C ("Taastrup"): New parameterization.
	* bioclimate_std.C ("default"): Use it.

2021-07-26  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.21 released.

2021-07-26  Per Abrahamsen  <pa@plen.ku.dk>

	* biopore_matrix.C (matrix_biopore_matrix): Don't warn about soil
	drier than pF 6.

2021-06-18  Per Abrahamsen  <pa@plen.ku.dk>


	* biopore_matrix.C, chemistry_std.C (remove_solute): Also removed
	derived chemicals.
	* biopore_matrix.C (total_solute): Also count derived compounds.
	* chemistry_std.C (total_content): Ditto.


2021-06-17  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.20 released.

	* am.C, production.C: More robust for high RDR.

2021-06-16  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.19 released.

2021-06-16  Per Abrahamsen  <pa@plen.ku.dk>

	* production.C (water_log_h_limit, water_log_root_limit):
	(RtDR_water_log_factor, RtDR_water_log_addend): New parameters.
	(water_logged): New log variable.

	* plf.C (always_0): New static member function.

2021-06-15  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.18 released.

2021-06-15  Per Abrahamsen  <pa@plen.ku.dk>

	* select_quiver.C: New model.

2021-06-11  Per Abrahamsen  <pa@plen.ku.dk>

	* bioclimate_std.C (litter_cover): New log variable.
	* reaction_Morgan98.C, reaction_Jarvis99.C, reaction_Styczen88.C:
	(tick_top): Use it.

2021-06-11  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.17 released.

2021-06-11  Per Abrahamsen  <pa@plen.ku.dk>

	* ghf.C (FAO56):
	* bioclimate_std.C (WaterDistribution):
	* ghf.h (value): Use Rn_ref instead of Rn.

2021-06-10  Per Abrahamsen  <pa@plen.ku.dk>

	* frame.C (set): Link instead of clone.
	* parser_file.C (load_object): Ditto.

2021-06-09  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.16 released.

2021-06-09  Per Abrahamsen  <pa@plen.ku.dk>

	* cloudiness.C (Cloudiness::tick): Update 'clear_sky_radiation'
	log variable.

2021-06-01  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.15 released.

2021-06-01  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic.C (min_pF): New program parameter.

2021-05-31  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.14 released.

2021-05-31  Per Abrahamsen  <pa@plen.ku.dk>

	* bioclimate_std.C (base): Renamed from "default".
	(default, FAO56_daily, FAO56_hourly, SSOC): New parameterizations.

2021-05-27  Per Abrahamsen  <pa@plen.ku.dk>

	* horizon.C (initialize_base): Add 'Cw2' to daily.log table.

2021-05-25  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.13 released.

	* root_system.C (PenDSPar, PenpFPar): New parameters.
	* horizon.C, horizon.h, soil.h, soil.C (root_retardation): New
	parameter.

2021-05-05  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.12 released.

2021-05-05  Per Abrahamsen  <pa@plen.ku.dk>

	* cloudiness.C (CloudinessClear::tick): Bug fix.

2021-05-03  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.11 released.

2021-05-03  Per Abrahamsen  <pa@plen.ku.dk>

	* wsource_weather.C, wsource_weather.h, weather.h:
	* weatherdata.h, weatherdata.C:
	(ground_heat_flux, GHF): New weather data.

2021-03-16  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.10 released.

2021-03-16  Per Abrahamsen  <pa@plen.ku.dk>

	* program_weather.C: Print estimates for solar noon.

	* cloudiness.C, cloudiness.h: New component.
	* Makefile (COMPONENTS): Add it.
	* bioclimate_std.C (cloudiness, cloudiness_index): Use it.

2021-03-11  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.09 released.

2021-03-11  Per Abrahamsen  <pa@plen.ku.dk>

	* wsource_weather.C (snow_fraction): Changed default temperature
	for 100 % snow from -2 to 0 dg C.

2021-03-10  Per Abrahamsen  <pa@plen.ku.dk>

	* pet_FAO_PM.C, pet_FAO_PM_hourly.C (check): Warn if wind or vapor
	pressure are missing.

2021-03-09  Per Abrahamsen  <pa@plen.ku.dk>

	* astronomy.C (ExtraterrestrialRadiation)
	(DailyExtraterrestrialRadiation): Rewrote to follow FAO56 closer,
	and to allow smaller timestep than 1 hour.
	* wsource_weather.C (tick_weather): Use it.

2021-03-08  Per Abrahamsen  <pa@plen.ku.dk>

	* pet.h, pet_weather.C, pet_makkink.C, pet_PM.C, pet_Hargreaves.C:
	* pet_FAO_PM_hourly.C, pet_FAO_PM.C (tick): No longer take time
	argument.

	* wsource_weather.C (day_cycle, extraterrestrial_radiation):
	(daily_extraterrastial_radiation): New log variables.
	* wsource_weather.C, wsource_weather.h
	(relative_extraterrestial_radiation): Removed.

2021-03-02  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.08 released.

2021-03-02  Per Abrahamsen  <pa@plen.ku.dk>

	* bioclimate_std.C (tick): handle saturated soil surface.

2021-02-23  Per Abrahamsen  <pa@plen.ku.dk>

	* program_optimize.C (parameters): New parameter.

2021-02-21  Per Abrahamsen  <pa@plen.ku.dk>

	* log_table.C (initialize): Special case NUL output.

	* soil_water.C, soil_water.h (default_h): New parameter.

2021-02-17  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.07 released.

2021-02-17  Per Abrahamsen  <pa@plen.ku.dk>

	* abiotic.C, abiotic.h (find_T_scale, find_SMB_scale, load_frame):
	New functions.
	* chemical_std.C, litter_mulch.C: Use them.

2021-02-16  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.06 released.

2021-02-16  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (tick_top): Surface application should also hit litter.

2021-02-14  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log.dai ("Surface water"): Added summaries of individual
	compartments.

	* bioclimate_std.C (litter_water_bypass): New log variable.

	* litter_mulch.C (T_ref, SMB_ref): New parameters.

2021-02-01  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.05 released.

2021-02-01  Per Abrahamsen  <pa@plen.ku.dk>

	* bioclimate_std.C (WaterDistribution): Avoid negative
	'litter_water_storage'.

	* reaction_dom.C (tick_soil): Fix assertion (numerical noise).

2021-01-30  Per Abrahamsen  <pa@plen.ku.dk>

	* ui.C (run): Actually run the program.

2021-01-29  Per Abrahamsen  <pa@plen.ku.dk>

	* toplevel.C (command_line): New '-L' switch, supress 'daisy.log'.

2021-01-18  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_M_BivG.C: New model.
	* Makefile (MODELS): Added it.

2021-01-14  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.03 released.

2020-12-17  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.02 released.

2020-12-17  Per Abrahamsen  <pa@plen.ku.dk>

	* litter_mulch.C (T_soil): New log variable.
	(use_soil_decompose): New parameter.

2020-12-10  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.01 released.

2020-12-10  Per Abrahamsen  <pa@plen.ku.dk>

	* litter_mulch.C (factor): New log variable.
	* litter.h, litter.C, litter_mulch.C (decompose_factor): New function.
	* chemical_std.C (tick_top): Use it.

2020-12-07  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 6.00 released.

2020-12-07  Per Abrahamsen  <pa@plen.ku.dk>

	* litter_mulch.C (decompose_heat_factor, decompose_water_factor):
	(decompose_SMB_pool, decompose_SMB_KM): New parameters.

2020-12-02  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.99 released.

2020-12-02  Per Abrahamsen  <pa@plen.ku.dk>

	* retention.C, reaction.h: New component.
	* Makefile (COMPONENTS): Added it.

2020-11-30  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (decompose_SMB_pool, decompose_SMB_KM): New parameters.

2020-11-30  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.98 released.

2020-11-27  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (litter_leak, litter_diffuse): New log variables.
	* lib/log.dai ("Surface Chemicals"): Handle them.

2020-11-26  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.97 released.

	* chemistry.h, chemistry_std.C, chemistry_multi.C (tick_top):
	* chemical.h, chemical_std.C (tick_top):  Take
	'Litter' argument.
	* column_std.C (tick_move): Update caller.

2020-11-24  Per Abrahamsen  <pa@plen.ku.dk>

	* litter.h, litter.C, litter_mulch.C (wash_off_rate): New
	function.

	* litter.h, litter.C, litter_mulch.C (intercept): New function.
	* bioclimate_std.C (WaterDistribution): Use it.
	(litter_wash_off): New log variable.

2020-11-23  Per Abrahamsen  <pa@plen.ku.dk>

	* wsource_weather.C (daily_extraterrastial_radiation): Remove
	unused declaration.
	(relative_extraterrestial_radiation): Fix spelling.

2020-11-16  Per Abrahamsen  <pa@plen.ku.dk>

	* litter_mulch.C (water): Changed unit from [cm] to [mm].

2020-11-12  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.96 released.

2020-11-12  Per Abrahamsen  <pa@plen.ku.dk>

	* litter.C, litter.h, litter_mulch (potential_exfiltration): New
	function.
	* bioclimate_std.C (WaterDistribution): Use it.

2020-11-07  Per Abrahamsen  <pa@plen.ku.dk>

	* wsource_weather.C, wsource_std.C (weather_initialize): Put time
	in message.

2020-11-04  Per Abrahamsen  <pa@plen.ku.dk>

	* litter_residue.C (Millet, Maize): specific_AI was 10 times too
	high.

2020-10-26  Per Abrahamsen  <pa@plen.ku.dk>

	* frame.h, frame.C (set_described, set_cited): Also take PLF arguments.

2020-10-23  Per Abrahamsen  <pa@plen.ku.dk>

	* organic_std.C (heat_factor, water_factor): Cite default value.

2020-10-20  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.95 released.

2020-10-15  Per Abrahamsen  <pa@plen.ku.dk>

	* column_std.C (output): Include litter in surface water.

	* wsource_weather.C (T_normal): TAverage and TAmplitude can be 0.
	(T_normal): Return NAN if not finite.

	* organic_std.C (tick): Fix debug message.

2020-10-12  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.94 released.

2020-10-12  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_M_vGBS.C, hydraulic_hypWeb.C: New files.
	* Makefile (MODELS): Added them.
	* hydraulic_hypWeb.C: Fix warning.

2020-10-09  Per Abrahamsen  <pa@plen.ku.dk>

	* complex_functions.C, complex_functions.h:
	* hyp_2F1.C, hyp_2F1.h: New utilities.
	* Makefile (OTHER): Add them.

2020-09-29  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (C): New base parameterization.
	(DOC): Use it.

2020-09-22  Per Abrahamsen  <pa@plen.ku.dk>

	* reaction_dom.C: New model.
	* Makefile (MODELS): Add it.

	* all: Removed 'Units' argument and added 'OrganicMatter' to many
	functions related with chemistry.

2020-09-21  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (DOC, DON): New parameterization.
	(base): New base class.
	(default): Use it.
	(nutrient, MIN): New base parameterizations.
	(FOCUS): New class.
	(default): Remove soilfac support.

	* litter_residue.h: Split from litter.h
	* litter_residue.C, litter_mulch.C: Split from litter.C.
	* Makefile (MODELS): Removed litter, added litter_mulch.
	(COMPONENTS): Added litter.
	(SPECIALS): Added litter_residue.
	(COMPONENTS): Removed soilfac.

2020-09-07  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C, chemical.h (add_to_litter_transform_source): New
	function.
	* chemical_std.C (litter_transform): New log variable.
	* chemistry_std.C (DOM): New parameterization.
	* chemical.C, chemical_std.C (DON, DOC): New parameterizations.
	* lib/log-std.dai ("Field chemical"): Addet it.

2020-09-02  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log.dai ("Crop uptake"): New log parameterization.

2020-09-01  Per Abrahamsen  <pa@plen.ku.dk>

	* bioclimate_std.C, bioclimate.h (get_litter_water)
	(get_litter_temperature): New functions.

2020-08-31  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C, chemical.h (litter_storage_amount): New function.

	* bioincorporation.C (am_compare): Move to am.C.
	* am.C, am.h (compare_CN): New place.

2020-08-27  Per Abrahamsen  <pa@plen.ku.dk>

	* log_select.C (parameter_names): Fix description.

2020-07-31  Per Abrahamsen  <pa@plen.ku.dk>

	* unit_model.C ([kg DM/m^3]): New unit.

2020-06-09  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/wwheat.dai ("Winter Wheat JG"): New parameterization.

2020-03-02  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic.h, hydraulic.C: Derived from ModelFramed so it can be
	used in a list.
	* soil.C (Hydraulic): New parameter.
	* hydraulic_linear.C: New model.
	* horizon.h, horizon.C (CEC): New function.
	* horizon.h, horizon_system.C, horizon_numeric.C (texture): New
	function.

2020-02-27  Per Abrahamsen  <pa@plen.ku.dk>

	* horizon.C, horizon.h (K): Removed.
	(K_factor): Added.
	* number_soil.C (NumberSoilK::value): Update caller.
	* soil.C (K): Update caller.

2020-02-03  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.93 released.

2020-02-03  Per Abrahamsen  <pa@plen.ku.dk>

	* geometry.C (biopore_pass_pipes): Allow non-zero bottom flux.

2019-12-05  Per Abrahamsen  <pa@plen.ku.dk>

	* vegetation_afforestation.C: Update caller.

	* root_system.h (EffectiveDensity): New log variable.
	(actual_density, effective_density): New accessors.

	* horizon.C, horizon.h, soil.C, soil.h (root_homogenity): New function.

2019-10-11  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.92 released.

2019-10-11  Per Abrahamsen  <pa@plen.ku.dk>

	* heatrect_linear.C (top): New model.

2019-10-07  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.91 released.

2019-10-07  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (litter_washoff_coefficient): New parameter.

2019-09-16  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.90 released.

2019-09-16  Per Abrahamsen  <pa@plen.ku.dk>

	* action_with.C (done): Also restrict field here.

2019-09-11  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.89 released.

2019-09-11  Per Abrahamsen  <pa@plen.ku.dk>

	* condition_walltime.C (walltime): New model.
	* daisy.C (stop_when): New parameter.

2019-08-21  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.88 released.

2019-08-14  Per Abrahamsen  <pa@plen.ku.dk>

	* surface.C (q_top): Fix sign error for forced_pressure.

2019-08-08  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_table.C (Cw2): Fix unit [cm^-1] instead of [h^-1].
	* hydraulic.C (run): Ditto.

2019-07-10  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.87 released.

2019-07-10  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_table.C: New model.
	* Makefile (MODELS): Added it.

	* hydraulic.C, hydraulic.h (check): Removed unused function.

2019-07-03  Per Abrahamsen  <pa@plen.ku.dk>

	* program_weather.C (run): Also print 'PAverage'.
	(print_fractiles): New functions.
	(P_fractiles, T_fractiles): New parameters.
	(run): Also print dabily averages.

2019-06-11  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.86 released.

2019-06-11  Per Abrahamsen  <pa@plen.ku.dk>

	* partition.C (tick): Make NNI work after DS=1 as well.

2019-06-04  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.84 released.

2019-06-04  Per Abrahamsen  <pa@plen.ku.dk>

	* reaction_shoot.C (shoot2): New model.

2019-05-14  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.83 released.

2019-05-14  Per Abrahamsen  <pa@plen.ku.dk>

	* crop_std.C (CropStandard::tick): Call root_system->tick_daily with right type parameters.

	* horizon.C (K_factor): New parameter.

2019-03-05  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.82 released.

2019-03-05  Per Abrahamsen  <pa@plen.ku.dk>

	* reaction_adsorption.C (tick_soil): Only use solute part of
	'solute' chemical, and try to be smart about when to use the new
	and old water content.

2019-03-04  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.81 released.

2019-03-04  Per Abrahamsen  <pa@plen.ku.dk>

	* reaction_sorption.C (tick_soil): Only use solute part of
	'solute' chemical, allowing the micture of equilibrium and
	non-equilibrium sorption.

2019-02-25  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.80 released.

2019-02-25  Per Abrahamsen  <pa@plen.ku.dk>

	* soilfac.C (Maja): New model.

2019-02-22  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.79 released.

2019-02-22  Per Abrahamsen  <pa@plen.ku.dk>

	* uzrect_2x1.C (vertical): Replace "lr" with "none".

	* soil_water.C, soil_water.h (mass_balance): Made it const.

2019-02-18  Per Abrahamsen  <pa@plen.ku.dk>

	* action_wait.C ('at'): New model.

2019-02-15  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.78 released.

2019-02-15  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (decompose): Also apply 'decompose_depth_factor'.

2019-02-07  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.77 released.

2019-02-07  Per Abrahamsen  <pa@plen.ku.dk>

	* uzrichard.C (require_positive_convergence): New parameter.

2019-02-05  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.76 released.

2019-02-05  Per Abrahamsen  <pa@plen.ku.dk>

	* assertion.C (Assertion::approximate): Made it a warning.

2019-02-05  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.75 released.

2019-02-05  Per Abrahamsen  <pa@plen.ku.dk>

	* mathlib.C (first_order_change): Find loss by mass balance.

2019-01-29  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.74 released.

2019-01-25  Per Abrahamsen  <pa@plen.ku.dk>

	* crop.h, crop.C, crop_std.C (stage): New function.
	* vegetation_afforestation.C, vegetation_permanent.C:
	* vegetation.h, vegetation_crops.C (stage_by_name): New function.
	* column.h, column_std.C, field.h, field.C (crop_stage): New function.
	* condition_crop.C (crop_stage_after): New model.

2019-01-22  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.73 released.

2019-01-16  Per Abrahamsen  <pa@plen.ku.dk>

	* Makefile (SUBMODELS): Removed ridge.C.
	(MODELS): Removed action_ridge.C.
	* ridge.h, ridge.C, action_ridge.C: Removed files.
	* surface.h (ridge, unridge, top_type::soil): Removed.
	* surface.C (last_cell, update_water): Removed.
	* uzlr.C, uzrichards.C, uzrect_Mollerup.C: Updated callers.
	* column_std.C (ColumnStandard::mix): Update caller.
	* column.h, column_std.C (ColumnStandard::ridge): Removed.
	* movement.h, movement_1D.C (ridge): Removed.
	* field.h, field.C (ridge): Removed.

2019-01-14  Per Abrahamsen  <pa@plen.ku.dk>

	* log_bbch2.C, log_bbch.C: Removed files.
	* Makefile (MODELS): Removed.

2018-12-21  Per Abrahamsen  <pa@plen.ku.dk>

	* phenology_std.C (DS1_name): Parameter removed.

	* lib/log-std.dai ("Crop"): Log it.

2018-12-20  Per Abrahamsen  <pa@plen.ku.dk>

	* cstage.C, cstage.h: New component.
	* Makefile (COMPONENTS): Added.
	* crop_std.C: Use it.

2018-12-19  Per Abrahamsen  <pa@plen.ku.dk>

	* check.C (Check::DS): New check.

2018-12-03  Per Abrahamsen  <pa@plen.ku.dk>

	* crpn.C (fixate_rate): Changed unit to [h^-1], was "per timestep."

2018-11-26  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.72 released.

2018-11-26  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (ChemicalStandard::decompose): Bug fix.
	(soil_affects_surface_decompose): New parameter.
	(surface_decompose_rate): Switch back to old default,
	'canopy_dissipation_rate'.

2018-11-26  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.71 released.

2018-11-19  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.70 released.

2018-11-05  Per Abrahamsen  <pa@plen.ku.dk>

	* geometry1d.C, geometry_rect.C (add_soil):: Make 'cell' size_t
	instead of double.

2018-11-01  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_M_vGip.C: New model.
	* Makefile (MODELS): Add it.

2018-10-29  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.69 released.

2018-10-29  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (litter_decompose_rate): New defaults to
	'canopy_dissipation_rate'.
	(surface_decompose_rate): Now defaults to the average decompose
	rate of the top soil.

2018-10-26  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.68 released.

2018-10-26  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C, chemical.h (tick_source): New 'Chemistry'
	function parameter. Handle metabolites on surface.
	(enable_surface_products): New parameter.

2018-10-03  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.67 released.

2018-10-03  Per Abrahamsen  <pa@plen.ku.dk>

	* surface.C (Surface::Implementation::tick): Only convert h to pF
	if h is negative.

2018-09-27  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.66 released.

	* hydraulic_old2.C: Resurrected this model.
	* Makefile (MODELS): Add it.

2018-09-04  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log.dai ("Drain Sink"): Removed.

2018-08-30  Per Abrahamsen  <pa@plen.ku.dk>

	* surface.C (EpFactor_SWE): New parameter.

2018-08-28  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.65 released.

2018-08-24  Per Abrahamsen  <pa@plen.ku.dk>

	* log_bbch2.C: New model.

2018-08-09  Per Abrahamsen  <pa@plen.ku.dk>

	* surface.C (evap_pond): Increased tolerance for negative ep to
	0.1 mm/y.

2018-07-26  Per Abrahamsen  <pa@plen.ku.dk>

	* log_bbch.C: Read BBCH file.

	* phenology_std.C (modify_DS): New parameter.

2018-07-25  Per Abrahamsen  <pa@plen.ku.dk>

	* sample/test-minimize.dai: Update to changes in other files.

2018-07-22  Per Abrahamsen  <pa@plen.ku.dk>

	* log_bbch.C: New model.
	* Makefile (MODELS): Add it.

	* daisy.h: Removed unused forward declarations.

2018-05-22  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.64 released.

2018-05-22  Per Abrahamsen  <pa@plen.ku.dk>

	* geometry.C, geometry.h (add_layer): Take 'Check' argument.
	* chemical_std.C, soil_water.C, soil_heat.C: Update callers.

2018-05-01  Per Abrahamsen  <pa@plen.ku.dk>

	* rootdens_growth.C (depth_factor): New parameter.

2018-04-24  Per Abrahamsen  <pa@plen.ku.dk>

	* reaction_std.C (tick_soil): Add TREELOG_MODEL.
	* transform_equil.C (tick): Ditto.
	* equil_goal.C (find): Ditto.

2018-04-18  Per Abrahamsen  <pa@plen.ku.dk>

	* pet_makkink.C (AslyngHansen82): Added Hansen (1984) reference.

2018-04-18  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.63 released.

2018-04-18  Per Abrahamsen  <pa@plen.ku.dk>

	* adsorption.C (AdsorptionInit::load_frame): New function.

	* adsorption_freundlich.C (C_ref): New parameter.

2018-04-17  Per Abrahamsen  <pa@plen.ku.dk>

	* bioclimate_std.C (reset_weather): New default Pet models.

	* chemical.h, chemical_std.C, reaction.h, reaction.C:
	* reaction_Jarvis99.C, reaction_Morgan98.C, reaction_Styczen88.C:
	(tick_top): Take Vegetation and Bioclimate parameters.
	* chemistry_std.C: Update caller.

	* chemical_std.C (tick_top): Empty snow storage if there is no
	snow.

2018-04-12  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.62 released.

2018-04-12  Per Abrahamsen  <pa@plen.ku.dk>

	* chemistry.h, chemistry_std.C, chemistry_multi.C (tick_top): Take
	vegetation and bioclimate arguments.
	* reaction.C, reaction.h (tick_vegetation): New virtual function.

2018-04-11  Per Abrahamsen  <pa@plen.ku.dk>

	* rate.C: New component.
	* Makefile (COMPONENTS): Add it.

	* reaction_shoot.C: New model.
	* Makefile (MODELS): Add it.

	* chemical_std.C (canopy_transform): New log variable.
	* chemical_std.C, chemical.h (add_to_surface_transform_source): Set it.

2018-04-03  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (litter_decompose_rate)
	(litter_decompose_halftime): New parameters.

2018-03-19  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.61 released.

	* chemical_std.C (update_matrix): Changed error to warning.

2018-03-06  Per Abrahamsen  <pa@plen.ku.dk>

	* uzrichard.C (richard): Fix iterators in call to copy.

	* raddist_std.C (tick): Use begin/end iteartors for fill.

	* select_flow.C, select_content.C, select_volume.C (set_column):
	Check that 'active' is set.

2018-03-05  Per Abrahamsen  <pa@plen.ku.dk>

	* all: Missing includes <algortihm> and <iterator>.
	Changed EXPORT and NORETURN to come before function, not after.
	Changed many "struct" to "class".
	All for Visual C++.
	* Daisy.vcxproj: New file.

	* wsource_weather.C (my_has_min_max_temperature): Initialize to
	false, not NAN.

2018-03-02  Per Abrahamsen  <pa@plen.ku.dk>

	* svat_ssoc.C (R_soil, R_sun, R_shadow, R_total): New log variables.
	* bioclimate_std.C (outgoing_Short_radiation): New log variable.

2018-02-28  Per Abrahamsen  <pa@plen.ku.dk>

	* bioclimate_std.C (svat_failed): New variable.

2018-02-16  Per Abrahamsen  <pa@plen.ku.dk>

	* soil_water.C (use_last): New parameter.
	(load_syntax): Use it.

2018-02-06  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.59 released.

2018-02-02  Per Abrahamsen  <pa@plen.ku.dk>

	* output.h, output.C (log_suffix): New parameter.
	* log.h (initialize, initialize_common): Use it.
	* log_table.C, log_select.h, log_harvest.C, log_extern.C:
	* log_checkpoint.C, log_all.h: Ditto.

2018-02-01  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log.dai ("Chemical Content Secondary")
	("Chemical Concentration Secondary"): Avoid filename conflict.

2018-01-29  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.58 released.

2018-01-25  Per Abrahamsen  <pa@plen.ku.dk>

	* condition_BBCH.C: New condition.
	* Makefile (MODELS): Add it.

2018-01-25  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.57 released.

2018-01-25  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.56 released.

2018-01-24  Per Abrahamsen  <pa@plen.ku.dk>

	* tertiary_biopores.C (update_active): Added assertions.
	* chemical_std.C (update_C): Ditto.

2018-01-22  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.55 released.

2018-01-22  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (update_C): Fix mass balance error with Freundlich.
	(tick_surface): Enable assertion that was commented out.

2018-01-18  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.54 released.

2018-01-18  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.53 released.

2018-01-18  Per Abrahamsen  <pa@plen.ku.dk>

	* irrigate.C, irrigate.h (suggest_dt): New function.
	* column_std.C (suggest_dt): Use it.

2018-01-17  Per Abrahamsen  <pa@plen.ku.dk>

	* harvest.C: Accept null / missing times.

	* crop_std.C (output): Don't log null times.

2018-01-15  Per Abrahamsen  <pa@plen.ku.dk>

	* pet_FAO_PM_daily.C, pet_FAO_PM_70: Removed.
	* Makefile (MODELS): Ditto.

2018-01-15  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.51 released.

2018-01-15  Per Abrahamsen  <pa@plen.ku.dk>


	* fao.C, fao.h (RefPenmanMonteith70): New function.
	* pet_FAO_PM_70.C: new model.
	* Makefile (MODELS): Add it.

2018-01-11  Per Abrahamsen  <pa@plen.ku.dk>

	* action_BBCH.C: New model.
	* Makefile (MODELS): Add it.

2018-01-10  Per Abrahamsen  <pa@plen.ku.dk>

	* program_optimize.C ("cite"): Add citation.

2018-01-09  Per Abrahamsen  <pa@plen.ku.dk>

	* pet_FAO_PM_daily.C: New model.
	* pet_FAO_PM_hourly.C: New model.
	* Makefile (MODELS): Add them.

	* pet_FAO_PM.C ("cite"): Cite the report.

2017-12-22  Per Abrahamsen  <pa@plen.ku.dk>

	* program.C (description, cite): New shared parameters. 

2017-12-18  Per Abrahamsen  <pa@plen.ku.dk>

	* program_optimize.C (load_frame): Add citation.

2017-12-07  Per Abrahamsen  <pa@plen.ku.dk>

	* gnuplot_soil.C (use_log): New parameter.

2017-12-07  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.49 released.

2017-12-07  Per Abrahamsen  <pa@plen.ku.dk>

	* biopore_matrix.C (update_cell_solute): col_size may be smaller
	than max_col_size right after first infiltration.

2017-12-07  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.48 released.

2017-12-07  Per Abrahamsen  <pa@plen.ku.dk>

	* program_gnuplot.C (run): Delete graph object after use to ensure
	file handle is closed.

2017-12-06  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.47 released.

2017-12-06  Per Abrahamsen  <pa@plen.ku.dk>

	* movement.h, movement.C, column.h, column_std.C, field.h, field.C:
	* chemistry.h, chemistry_std.C, chemistry_multi.C:
	* chemical_std.C, chemical.h:
	* tertiary.h, tertiary.C, tertiary_instant.C, tertiary_old.C:
	* tertiary_biopores.C (remove_solute): New function.
	* action_spray.C (remove_solute): Use ir

2017-12-05  Per Abrahamsen  <pa@plen.ku.dk>

	* movement.h, movement.C, column.h, column_std.C, field.h, field.C:
	* chemistry.h, chemistry_std.C, chemistry_multi.C:
	* tertiary.h, tertiary.C, tertiary_instant.C, tertiary_old.C:
	* tertiary_biopores.C (remove_solute): New function.
	* action_spray.C (remove_solute): New action.

2017-11-30  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.46 released.

2017-11-29  Per Abrahamsen  <pa@plen.ku.dk>

	* lexer_table.C: Reindent file.
	* lexer_table.C, lexer_table.h (title): New member function.

2017-11-28  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C, chemical.h (remove_all): New member function.

	* biopore_matrix.C, biopore_drain.C, biopore.h (remove_solute):
	New member function.

2017-11-27  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.45 released.

2017-11-24  Per Abrahamsen  <pa@plen.ku.dk>

	* soilfac.C: New component.
	* Makefile (COMPONENTS): Add it.
	* chemical_std.C: Use it.

2017-11-17  Per Abrahamsen  <pa@plen.ku.dk>

	* svat_ssoc.C (solve): Try with both previous values and air
	temperature.

2017-11-03  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.44 released.

2017-11-03  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.43 released.

2017-11-01  Per Abrahamsen  <pa@plen.ku.dk>

	* raddist_DPF.C (tick): Warn if we have significant global
	radiation at night.

2017-10-30  Per Abrahamsen  <pa@plen.ku.dk>

	* photo_Farquhar.C (PhotoFarquhar::PhotoFarquhar): Clear log
	variables.

2017-10-25  Per Abrahamsen  <pa@plen.ku.dk>

	* soil_water.C (output, tick_after): table_low and table_high can be 0.

2017-10-19  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C, chemical.h (molar_mass): New parameter and
	function.
	(decompose, check): Use it.

2017-09-29  Per Abrahamsen  <pa@plen.ku.dk>

	* rubiscoN.C: New component.
	* Makefile (COMPONENTS): Add it.
	* crop_std.C (RubiscoN): Add parameter.

2017-09-27  Per Abrahamsen  <pa@plen.ku.dk>

	* svat_ssoc.C (epsilon_soil, epsilon_leaf): New parameters,
	replace 'epsilon' constant.

2017-09-25  Per Abrahamsen  <pa@plen.ku.dk>

	* bioclimate_std.C (canopy_leak_rate): Fix rate to be base on
	storage at end of timestep. -1 if there is no water at the end of the
	timetep.
	* chemical_std.C (tick_top): Update caller.

2017-08-11  Per Abrahamsen  <pa@plen.ku.dk>

	* phenology_std.C (DS1_name): Use parameter value, not parameter name.

2017-06-21  Per Abrahamsen  <pa@plen.ku.dk>

	* horizon.C: (quartz): New parameter.

	* horheat.C (K_water): Check right parameter when initializing.
	(heat_conductivity): Check K_water and K_ice sizes.
	(initialize): Don't specify quarts here.

	* crop_std.C (output): "Partit", not "Partition".

2017-06-19  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.39 released.

	* svat_none.C (tick): Use current air temperature, not daily
	average.

2017-06-14  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.38 released.

	* gnuplot_time.C (timeform, plot): Support timesteps smaller than 1 hour.

2017-06-07  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.37 released.

2017-06-07  Per Abrahamsen  <pa@plen.ku.dk>

	* action_harvest.C (doIt): Seperate storage organ from total yield
	message.

2017-06-06  Per Abrahamsen  <pa@plen.ku.dk>

	* surface.C (set_svat_temperature): Set surface temperature if
	there is no ponding.

	* svat_ssoc.C (tick): T_z0 should be top soil, not previous border.

2017-06-02  Per Abrahamsen  <pa@plen.ku.dk>

	* unit_model.C (create_convertion): Only make simple convertion
	between compatible base types.

2017-06-01  Per Abrahamsen  <pa@plen.ku.dk>

	* sample/test-prd.dai ("KarJyn_C"): Specify texture class.

2017-05-31  Per Abrahamsen  <pa@plen.ku.dk>

	* svat_ssoc.C (tick): Fix unit convertion for k_h.

	* soil_heat.C (top_flux): Fix unit in comment.

2017-05-23  Per Abrahamsen  <pa@plen.ku.dk>

	* movement_1D.C (initialize_derived): Add 'delay' to daisy.log

2017-05-08  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log.dai ("SSOC"): Use "handle average" for radiation instead
	of "handle sum" to match dimension.

2017-03-29  Per Abrahamsen  <pa@plen.ku.dk>

	* raddist_DPF.C (tick): Add "volatile" to avoid clang crash.

2017-03-29  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.32 released.

2017-03-24  Per Abrahamsen  <pa@plen.ku.dk>

	* wsource_combine.C (Entry): handle missing "begin" or "end".

2017-02-24  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_M_C.C ("l"): Mualem, not burdine.

	* root_system.C (water_uptake): Fix NOTE (water uptake as function
	of crown potential is not monotonic).

	* vegetation_permanent.C (LAIvsDAY): Switched domain and range
	dimensions.
2017-02-20  Per Abrahamsen  <pa@plen.ku.dk>

	* phenology_std.C (DS1_name): New parameter.

2017-01-26  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.31 released.

2017-01-25  Per Abrahamsen  <pa@plen.ku.dk>

	* program_optimize.C (Program): Comment out unused 'dimension'.
	* library.C (clear_parsed): Comment out unused 'key'.
	* gnuplot_vector.C (initialize): Comment out unused 'tag'.

	* plf.h (PLF): Coverity: Added default move constructor.
	* time.h (Time): Ditto.
	* symbol.h (symbol): Coverity: Remove copy constructor and assigment
	operator in order to get default move constructor.
	* filepos.h, filepos.C (Filepos): Ditto.
	* im.h, im.C (IM): Ditto.
	* time.C (mday2yday): Coverity: bounds check for month.
	* assertion.h (daisy_safe_assert): New macro.
	* format.C (pop, ~Document): Coverity: Use it to avoid throwing
	from constructors.
	* assertion.C (~Register): Ditto.
	* xref.C (leave_library, leave_model, leave_submodel_default):
	Coverity: Make them safe to call from destructors.
	* treelog_store.C (close): Coverity: Make is safe to call from
	destructors.
	* frame.C (unregister_child): Ditto.
	* path.C (get_cwd): Ditto.
	* field.C (unrestrict): Ditto.
	* xref.C (~TraverseXRef): Coverity. Use 'daisy_safe_assert'.
	* im.C (~IM): Ditto.
	* field.C (~Implementation): Ditto.
	* treelog_text.C (~Implementation): Ditto.
	* librarian.C (~Librarian): Ditto.
	* intrinsics.C (~Intrinsics): Ditto.
	* symbol.C (~Init): Ditto.
	* oldunits.C (~Oldunits): Ditto.
	* condition_extern.C (initialized_ok): Coverity: New variable.
	* depth.C (DepthTable::read_line): Coverity: Check get_entries
	and get_time_dh return values.
	* wsource_weather.C (name_first): Coverity: Don't dereference
	unknown source.

2017-01-23  Per Abrahamsen  <pa@plen.ku.dk>

	* crop_simple.C (~CropSimple): Coverity: Don't delete 'canopy'.
	* program_KM2.C (run): Coverity: Check resolution == 0.
	* organic_std.C (check_am): Coverity: Remove unused 'om_ok' code.
	* Makefile (DISABLED, OTHER): Coverity: Disable 'cdaisy.C'.
	* wsource_combine.C (Entry::Entry): Coverity: Fix memory leak.

	* svat_pmsw.C (tick): Coverity: swap tair and tcan_prev.

2017-01-06  Per Abrahamsen  <pa@plen.ku.dk>

	* wsource_combine.C (entries): Fix check for period overlap.

2016-12-08  Per Abrahamsen  <pa@plen.ku.dk>

	* harvest.h, harvest.C (harvest_index): New parameter.
	* log_harvest.C, harvesting.C, crop_simple.C: Update caller.

2016-11-23  Per Abrahamsen  <pa@plen.ku.dk>

	* solupt.C, solupt.h: New component.
	* Makefile (COMPONENTS): Add it.

2016-11-08  Per Abrahamsen  <pa@plen.ku.dk>

	* vegetation_afforestation.C:
	* field.C, field.h, column.h, column_std.C:
	* vegetation.h, vegetation_permanent.C:
	* vegetation_crops.C (sow): Take instantiated crop object.
	* action_sow (sow_object): New action.

2016-10-04  Per Abrahamsen  <pa@plen.ku.dk>

	* mathlib.C: Removed old exception code.

2016-09-30  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log.dai ("Surface Water Balance"): Removed. 
	("Evapotranspiration"): Ditto.

2016-09-29  Per Abrahamsen  <pa@plen.ku.dk>

	* uzrect_Mollerup.C (S_macro, S_macro_sum, S_drain, S_drain_sum):
	Removed unused variables.

2016-09-20  Per Abrahamsen  <pa@plen.ku.dk>

	* log.h (output_vector): Removed.
	* action_crop.C, daisy.C (output): Update callers.

2016-09-16  Per Abrahamsen  <pa@plen.ku.dk>

	* summary_fractiles.C (find_fractile): Allow 100 % fractile.

	* harvest.C, harvest.h (time_sow, time_emerge, time_flowering):
	(time_ripe): New members.
	(time_harvest): Renamed from 'time'.
	* harvesting.C, harvesting.h (harvest): Update caller.
	* log_harvest.C (match): Ditto.
	* crop_simple.C (harvest): Ditto.
	* crop_std.C (sow_time, emerge_time, flowering_time, ripe_time):
	New state variables. Update callers.

2016-09-01  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.30 released.

2016-09-01  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (clear): Don't clear 'M_tertiary' here, it is
	needed for initial line later.

	* select_array.C, select_value (done_small): Handle ddt == 0.0.

2016-08-26  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.29 released.

2016-08-26  Per Abrahamsen  <pa@plen.ku.dk>

	* biopore.C (solute_infiltrate): Positive is up (sign error).

	* tertiary_biopores.C (solute): Removed dead variable.

2016-06-28  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.28 released.

2016-06-28  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log-std.dai ("Crop"): New log parameterization.

	* production.C (tick): Clear 'Respiration'.

2016-06-27  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.27 released.

2016-06-24  Per Abrahamsen  <pa@plen.ku.dk>

	* vernalization.C, seed_LAI.C (load_frame): Fix units.
	* canopy_std.C, crpn.C, production.C (load_syntax): Ditto.

2016-06-23  Per Abrahamsen  <pa@plen.ku.dk>

	* harvest.C (sorg_N_per_DM): New log variable.

	* block.C (expand_string): "${model}" expand into the name of the
	model for model types other than Number and Stringer.

2016-06-15  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log.dai ("Crop Production", "Crop Photosynthesis"): Fix "$["
	error.

2016-06-01  Per Abrahamsen  <pa@plen.ku.dk>

	* symbol.C: Changed <map> to <unordered_map>.

2016-05-27  Per Abrahamsen  <pa@plen.ku.dk>

	* condition_crop.C (with): New condition.
	* log_select.C (active): New parameter.

2016-05-19  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.26 released.

2016-05-18  Per Abrahamsen  <pa@plen.ku.dk>

	* photo_Farquhar.C (assimilate): Test CO2_atm is positive.
	* weatherdata.C, weatherdata.h (CO2): New token.
	* wsource.h, wsource_weather.h (CO2, has_CO2): New function.
	* wsource_weather.C (my_CO2, tick, CO2, has_CO2, output, co2): Use is.

2016-05-17  Per Abrahamsen  <pa@plen.ku.dk>

	* select.h, select.C (Handle::content_sum): New handle.
	* select_array.C, select_value.C (done_small): Support it.

2016-05-10  Per Abrahamsen  <pa@plen.ku.dk>

	* field.h, field.C, column.h, column_std.C, organic.h, organic_std.C: 
	* action_tillage.C (store_SOM, restore_SOM): New actions.
	* organic.h, organic_std.C (stored_SOM_C, stored_SOM_M): New state
	parables.

2016-05-06  Per Abrahamsen  <pa@plen.ku.dk>

	* vegetation_crops.C (my_harvest): New log variable ('harvest').
	(harvest, pluck, output, load_frame): Support it.

2016-05-04  Per Abrahamsen  <pa@plen.ku.dk>

	* parser_file.C (load_list, add_derived): Made duplicate
	definitions errors instead of warnings.

2016-05-03  Per Abrahamsen  <pa@plen.ku.dk>

	* organic_std.C (update_pools): Allow for zero N.

2016-05-02  Per Abrahamsen  <pa@plen.ku.dk>

	* vegetation_crops.C, vegetation_permanent.C:
	* vegetation_afforestation.C, vegetation.h (clear): New function.
	* column_std.C (clear): Call it.

2016-04-21  Per Abrahamsen  <pa@plen.ku.dk>

	* summary_fractiles.C: New model.

2016-04-04  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.25 released.

2016-03-23  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log.dai ("Soil Chemicals", "Tertiary chemical sink"): Removed.
	("Groundwater"): Removed N.
	("Drain Sink NO3", "Drain Sink NH4"): Matrix sink only.
	("Colloids balance", "Colloids"): Updated.

2016-03-22  Per Abrahamsen  <pa@plen.ku.dk>

	* select_volume.C, select_flow.C (output_array): Ignore empty arrays.
	* chemical_std.C (M_tertiary, S_p_drain, S_soil_drain, S_B2M)
	(S_M2B): New log variables.
	(S_drain, S_tertirary): Removed.
	* chemical_std.C, chemical.h (add_tertiary): New function.
	* biopore_drain.C, biopore_matrix.C, biopore.h (matrix_solute):
	Change argument list.
	* tertiary_biopores.C (solute): Update caller.
	* lib/log-std.dai ("Soil chemical", "Field chemical"):
	("Soil nitrogen", "Field nitrogen"): Use new log variables.

2016-03-21  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C, chemical.h (set_tertiary): Merged
	'set_tertiary_full' and 'set_tertiary_top'.
	(need_fake_tertiary): Removed.
	(tick_after): Update caller.
	(pass_below): Removed.

	* biopore_matrix.C (M): New state variable.
	* biopore_drain.C (S_chem_to_drain): New log variable.
	(S_to_drain): Renamed from 'S_from_drain'.
	* biopore.h, biopore.C (S_chem, J): New log variables.
	* lib/log.dai (biopore-chemical, "Biopore content")
	("Biopore chemical", "Biopore water"): Log individial biopore
	classes.

	* imvec.C (output): Allow inheritance for chemicals, e.g. 'N'
	matching both 'NO3' and 'NH4'.

2016-03-18  Per Abrahamsen  <pa@plen.ku.dk>

	* im.C, im.h (soil_unit): New function.

	* geometry.C (biopore_pass_pipes, biopore_pass_below): Made them
	members of 'Geometry'.

2016-03-17  Per Abrahamsen  <pa@plen.ku.dk>

	* imvec.C, imvec.h (clear, print, multiply): New functions.
	* im.C, im.h (sink_unit): New function.

2016-03-16  Per Abrahamsen  <pa@plen.ku.dk>

	* imvec.h, imvec.C (get_array): Added non-const version.
	(clear): New function.

	* im.C, im.h (add_value_raw): New function.
	(get_value_raw, set_value_raw): Made public.

2016-03-15  Per Abrahamsen  <pa@plen.ku.dk>

	* imvec.C, imvec.h (add_syntax): Add 'size' argument.
	(clear): New function.

	* biopore_matrix.C (load_solute): Update caller.
	(solute): Changed from pointer to member.

2016-03-14  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.24 released.

2016-03-14  Per Abrahamsen  <pa@plen.ku.dk>

	* biopore_matrix.C (update_cell_water): Add tiny number to 'top' to
	avoid numerical noise.

	* lexer_table.C (get_time_dh_do): Forgot to set 'date_only'.

	* lexer_table.h, lexer_table.C (get_time_dh, get_time_do):
	(get_time_dh_do): Split from overloaded 'get_time'.
	* xysource_profile.C (load):
	* program_post.C (run):
	* gnuplot_vector.C (load_when, load_interval):
	* depth.C (Depth):
	* source_file.C (read_entry):
	* xysource_flux.C (load_when, load_interval): Update caller

2016-03-11  Per Abrahamsen  <pa@plen.ku.dk>

	* condedge.C (Condedge): Commented out set but nut used variables.

	* toplevel.C (copyright): Fix copyright date. Use Latin1 oslash on Windows.

	* setup-w32.nsi, setup-w64.nsi: Update Daisy homepage.

	* fao.C (RefPenmanMonteith): Added units in comments.

	* pet_FAO_PM.C (use_wet): Changed default to 'false'.

2016-03-10  Per Abrahamsen  <pa@plen.ku.dk>

	* Makefile (debian-setup): Renamed from 'debian', handle
	dependencies.

2016-03-09  Per Abrahamsen  <pa@plen.ku.dk>

	* Makefile (BOOSTINC, CXSPARSELIB): Use system version under Unix.

	* program_post.C (run): Removed unused variable.

2016-03-08  Per Abrahamsen  <pa@plen.ku.dk>

	* phenology_std.C (tick_daily): Don't clear production here.
	* crop_std.C (tick): Clear it here instead.

	* production.C ("WCrop"): New log variable.

2016-03-07  Per Abrahamsen  <pa@plen.ku.dk>

	* toplevel.C (copyright): Make 'S{\o}ren Hansen' UTF-8.

	* all: slang warnings cleanup.

2016-03-04  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.23 released.

2016-03-04  Per Abrahamsen  <pa@plen.ku.dk>

	* log_select.C (check): Make missing border an error.

	* geometry1d.C (initialize_zplus): Complain if zplus doesn't
	contain fixed.

	* soil.C (border): Use horizon endpoints as default value.

	* all: Replaced 'boost::scoped_ptr' and 'std::auto_ptr' with
	'std::unique_ptr'.

	* lib/fertilizer.dai (slurry): Changed default volatilization from
	15 % to 0 %.

	* path.C (get_daisy_home): Use the right featuture test for W64.

2016-03-03  Per Abrahamsen  <pa@plen.ku.dk>

	* geometry.C (add_layer, initialize_layer): Support specifying
	initial values with a PLF.

	* Makefile: No longer include source with binary distributions.

2016-02-22  Per Abrahamsen  <pa@plen.ku.dk>

	* program_post.C (handle_x, handle_z): New parameters.

2016-02-15  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.22 released.

2016-01-27  Per Abrahamsen  <pa@plen.ku.dk>

	* uzrect_Mollerup.C (drain): Support 'pipe_outlet'.
	(tick): Update caller.

2015-12-08  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log-std.dai (crop): Define 'cropfid2'.
	* lib/log.dai ("Crop Photosynthesis", "Crop Production")
	("Forced LAI", "Simple Crop Production", "Root Density")
	("Carbon Balance", "Root form parameter", Stomatacon): Add crop
	name to file name if specified.

2015-12-07  Per Abrahamsen  <pa@plen.ku.dk>

	* Version 5.21 released.

2015-12-04  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/dk-maize.dai ("Silomajs"): Changed NfRootCnc at
	DS=2.0 from 0.7 % to 0.4 %, mainly in order to get below the
	CrRootCnd which is 0.5 %.

2015-12-02  Per Abrahamsen  <pa@plen.ku.dk>

	* volume_box.C (check_border): Fix logic error.

	* lexer_table.C (get_time): Allow minutes, seconds, and microseconds.

	* plf.C, plf.h (operator<, operator<=): New operators.
	* crpn.C (check_n_less): New function.
	(check_alist): Check that Pt >= Cr >= Nf N concentration.
	* lib/wwheat.dai ("Winter Wheat; Eest"): Removed.
	* lib/sugarbeet.dai ("Sugar Beet"): 
	* lib/potato.dai ("Potato; Koege"): 
	* lib/maize.dai ("Maize", "Pioneer Maize"): Changed NfRootCnc at
	DS=2.0 from 0.7 % to 0.4 %, mainly in order to get below the
	CrRootCnd which is 0.5 %.

2015-11-25  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_B_C.C, hydraulic_M_C.C:
	* hydraulic_B_BaC.C, hydraulic_M_BaC.C (check_alist): Fix check for p.

2015-11-19  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/sugarbeet.dai, lib/sbeet.dai, lib/fodderbeet.dai (MaxPen):
	Changed from 70 to 200.

2015-11-13  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_B_C.C, hydraulic_M_C.C, hydraulic_M_BaC.C:
	* hydraulic_B_BaC.C (l, p): New parameters.

2015-09-25  Per Abrahamsen  <pa@plen.ku.dk>

	* intrinsics.C (instantiate): Better error message.

	* program_extract.C: New model.
	* Makefile (MODELS): Added it.

2015-09-24  Per Abrahamsen  <pa@plen.ku.dk>

	* bioclimate_std.C (canopy_cover): New log variable.
	* lib/log.dai ("Surface water"): Litter cover and canopy cover now
	also logged.

2015-09-21  Per Abrahamsen  <pa@plen.ku.dk>

	* xysource_freq.C: New model.
	* Makefile (MODELS): Add it.

2015-09-02  Per Abrahamsen  <pa@plen.ku.dk>

	* adsorption_linear.C (K_d): New parameter.

2015-08-31  Per Abrahamsen  <pa@plen.ku.dk>

	* wsource* (skip_ahead): Fast skipping of weather data for very
	long weather series.

	* depth.C (season): New model.

	* vcheck.C, vcheck.h (Season): New check.

2015-06-12  Per Abrahamsen  <pa@plen.ku.dk>

	* all (sortption_table): New action model.

2015-05-20  Per Abrahamsen  <pa@plen.ku.dk>

	* Makefile (MODELS): Removed 'action_heat.C'.

2015-04-28  Per Abrahamsen  <pa@plen.ku.dk>

	* litter.h: Make 'cover' logable.

2015-03-20  Per Abrahamsen  <pa@plen.ku.dk>

	* program_sbrdata.C: New model.

2015-03-12  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log.dai ("Groundwater"): Fix select model for 'table_low'
	and 'table_high'.

2015-01-29  Per Abrahamsen  <pa@plen.ku.dk>

	* all: Make sure hydraulic models have center_z.

	* soil.C, soil.h (initialize): Explicit msg parameter instead of block.
	* column_std.C (initialize): Update caller.
	* field.C (initialize): Update caller.

2015-01-22  Per Abrahamsen  <pa@plen.ku.dk>

	* biopore_matrix.C (update_cell_water): Numeric bug for very small
	amounts of water.

2015-01-21  Per Abrahamsen  <pa@plen.ku.dk>

	* column_std.C (tick_move): Call it.
	* hydraulic.h, hydraulic.C:
	* soil.C, soil.h (tick): New function.

2015-01-19  Per Abrahamsen  <pa@plen.ku.dk>

	* soil.C (frozen_water_K_factor): New parameter.

2015-01-15  Per Abrahamsen  <pa@plen.ku.dk>

	* action_tillage (surface_loose): New parameter.
	* field.h, field.C (mix): Ditto.
	* column.h, column_std.C (mix): Ditto.
	* soil.h, soil.C (tillage): New function.
	* hydraulic.h, hydraulic.C (tillage): Ditto.
	* zone.h, zone_box.C, zone_poly.C (overlap_interval): New function.
	* hydraulic_wepp.C: New model.
	* Makefile (MODELS): Enable it.

2014-12-16  Per Abrahamsen  <pa@plen.ku.dk>

	* geometry_rect.h (dimensions): If you only have one row, it is
	an 1D model.

2014-12-15  Per Abrahamsen  <pa@plen.ku.dk>

	* groundwater_pipe.C, horizon_std.C: Removed.
	* Makefile (MODELS): Removed.
	* soil.h, soil.C: Removed support for the 'pipe' groundwater
	model.
	* groundwater.C, groundwater.h: Ditto.
	* tertiary_old.C (initialize): Ditto.
	* biopore_drain.C (initialize): Ditto.
	* biopore_matrix.C (initialize): Ditto-
	* hydraulic.h, hydraulic.C, hydraulic_hypres.C: Ditto.
	* horizon.h, horizon.C: Ditto.

2014-12-03  Per Abrahamsen  <pa@plen.ku.dk>

	* texture.h, texture.C: Renamed CaCO3 to chalk.

	* horizon_numeric.C, horizon_system.C ("chalk"): New parameter.

2014-12-02  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/wwheat.dai ("Winter Wheat; Foulum"): Restored Leaf partitioning.

2014-11-26  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/dk-maize.dai ("Silomajs; Foulum"): New crop.
	* lib/dk-grass.dai ("Red fescue"): New crop.
	* sample/dk-soil.dai (Taastrup): New soil.

2014-11-20  Per Abrahamsen  <pa@plen.ku.dk>

	* Makefile (MODELS): Removed 'horizon_std.C'.

2014-11-12  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log.dai ("N Balance", "NH4 Soil Balance")
	("NO3 Soil Balance", "Organic Nitrogen Balance")
	("Crop Nitrogen Balance", "Nitrogen Balance")
	("Root Zone Water Balance", "Total Water Balance"): Removed.

2014-05-16  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log-std.dai ("Soil water", "Field water"): Include biopore
	flow directly.
	* soil_water.C, soil_water.h: Ditto.
	* tertiary_biopores.C, biopore_matrix.C, biopore_drain.C: Ditto.

2014-05-05  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log.dai ("Biopore Drain Sink Water"): New model.

	* soil_water.h (S_p_drain): New log variable.

2014-03-28  Per Abrahamsen  <pa@plen.ku.dk>

	* soil.C, soil.h (Theta_sat): New function.
	* root_system.C, root_system.h (PenWaterFac): New parameter.
	(tick_daily): Now takes 'soil_water' parameter.
	* crop_std.C, crop_simple.C (tick): Update caller.

2014-03-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.19 released.

2014-03-26  Per Abrahamsen  <pa@plen.ku.dk>

	* surface.C, surface.h: Clarified units.
	* surface.C, surface.h (runoff_rate): No 'dt' argument.
	* column_std.C (tick_move): Update caller.
	* action_surface.C (set_surface_detention_capacity): Unit of 'height'
	should be mm.
	* surface.C (tick): Missing 'dt' in balance check.

2014-03-17  Per Abrahamsen  <pa@plen.ku.dk>

	* program_KM2.C: New model.

2014-01-22  Per Abrahamsen  <pa@plen.ku.dk>

	* movement.h, movement.C:
	* tertiary.h, tertiarry.C, tertiary_biopores.C (suggest_dt): New
	function.
	* column_std.C (suggest_dt): Use it.
	* column_std.C, column.h, field.h, field.C (suggest_dt): Take
	'weather_dt' argument.
	* daisy.C (tick): Update caller.

2013-12-13  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log-std.dai ("Field chemical"): Volatilization is
	'surface_decompose'.

	* chemical_std.C (canopy_dissipate): Removed log variable.
	* chemical.h, chemistry.h, chemistry_std.C, chemistry_multi.C: Ditto.

2013-10-02  Per Abrahamsen  <pa@plen.ku.dk>

	* log_table.C (record_start): Use SoilCells and SoilEdges.
	* select_array.C (print_missing): New function.
	(done_print): Use it.

2013-09-24  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.18 released.

2013-09-24  Per Abrahamsen  <pa@plen.ku.dk>

	* vegetation.C, vegetation.h (N, N_fixated): New log variables.
	* vegetation_crops.C, vegetation_permanent.C: Support it.
	* crop.h, crop_std.C, crop_simple.C: Ditto.
	* lib/log-std.dai ("Field nitrogen"): Adapt.

2013-09-23  Per Abrahamsen  <pa@plen.ku.dk>

	* vegetation_permanent.C (tick): Fix assumption that dt = 1h.

2013-09-20  Per Abrahamsen  <pa@plen.ku.dk>

	* select.h, select.C (multi_check): New function.
	* select_volume.C (space): New parameter.

2013-09-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.17 released.

2013-09-17  Per Abrahamsen  <pa@plen.ku.dk>

	* program_post.C: New model.
	* Makefile (MODELS): Add it.

2013-09-16  Per Abrahamsen  <pa@plen.ku.dk>

	* soilph.C: New component.
	* Makefile (COMPONENTS): Add it.

2013-09-11  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (tick_top): Use 'dissipate_surface' variable
	correctly.

2013-08-27  Per Abrahamsen  <pa@plen.ku.dk>

	* deposition.h, deposition.C: New component.
	* Makefile (COMPONENTS): Added it.

2013-07-11  Per Abrahamsen  <pa@plen.ku.dk>

	* vegetation_afforestation.C: New model.

2013-07-01  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.16 released.

2013-07-01  Per Abrahamsen  <pa@plen.ku.dk>

	* adsorption_freundlich.C (C_to_M): 'm' should be based on mg/L.

2013-06-28  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical.h, chemical_std.C (spray, dissipate): Split into
	'overhead' and 'surface' variants.
	* chemistry.h, chemistry_std.C, chemistry_multi.C: Same.
	* irrigate.C (tick): Update caller.
	* column.h, column.C: update caller.
	* field.h, field.C (spray): Update caller.
	* action_crop.C (doIt): Update caller.

2013-03-21  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.15 released.

2013-03-21  Per Abrahamsen  <pa@plen.ku.dk>

	* organic_std.C (output): Use 'name', not 'objid'.

2012-12-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.14 released.

2012-12-11  Per Abrahamsen  <pa@plen.ku.dk>

	* surface.C: Allow 'pond_section' values up to 10 times
	'DetentionCapacity'.
	(tick): Fix bug calculating runoff.

2012-12-05  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.13 released.

2012-12-05  Per Abrahamsen  <abraham@dina.kvl.dk>

	* attribute.h (type_name): EXPORT.

2012-12-05  Per Abrahamsen  <pa@plen.ku.dk>

	* groundwater_aquitard.C, groundwater.C, groundwater_deep.C:
	* groundwater_extern.C, groundwater_file.C, groundwater_fixed.C:
	* groundwater_flux.C, groundwater.h, groundwater_lysimeter.C:
	* groundwater_pipe.C, groundwater_source.C, groundwater_static.C:
	* depth.h, depth.C (tick, check, initialize): Removed 'units' parameter.
	* column_std.C (tick_source, check, initialize): Update callers.

2012-12-03  Per Abrahamsen  <pa@plen.ku.dk>

	* summary_RsqrW.C: New model.

2012-11-30  Per Abrahamsen  <pa@plen.ku.dk>

	* summary_Rsqr.C (print_flag): New parameter.
	(measure): Sort, check for duplicates.

2012-11-26  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_B_C.C, hydraulic_M_C.C (l): New parameter.

2012-10-09  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log.dai ("Vegetation"): Updated.

	* vegetation.C (output): Remove duplicate entry.

2012-10-04  Per Abrahamsen  <pa@plen.ku.dk>

	* uifilter.C: New component.
	* Makefile (COMPONENTS): Add it.

	* ui_Qt_run.C, ui_Qt_run.h: New features.
	* run_Qt.C: Cleanup.

2012-09-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.12 released.

2012-09-13  Per Abrahamsen  <pa@plen.ku.dk>

	* aom.C ("AOM-DIRECT"): New pool name.
	* lib/log.dai ("AOM Pools"): Use named pools.
	("Organic Matter"): Ditto.
	* lib/fertilizer.dai (slurry): Ditto.

2012-08-27  Per Abrahamsen  <pa@plen.ku.dk>

	* column.h, column_std.C (initialize): Overloaded with version
	taking fewer arguments.

	* number_soil.C (NumberByDepth): Use it.

2012-08-22  Per Abrahamsen  <pa@plen.ku.dk>

	* gnuplot_profile.C: New model.
	* Makefile (MODELS): Added.

2012-08-20  Per Abrahamsen  <pa@plen.ku.dk>

	* soil.C (zones): Make it a 'Zone' sequence.

	* zone_poly.C: New model.

2012-08-17  Per Abrahamsen  <pa@plen.ku.dk>

	* zone_box.C: New model.
	* Makefile (MODELS): Added.

2012-08-15  Per Abrahamsen  <pa@plen.ku.dk>

	* zone.C, zone.h: New component.
	* Makefile (COMPONENTS): Added it.

2012-07-10  Per Abrahamsen  <pa@plen.ku.dk>

	* lexer_table.C (read_keywords): Trim non-text strings.

2012-06-21  Per Abrahamsen  <pa@plen.ku.dk>

	* point.C, point.h: New utility.
	* Makefile (SUBMODELS): Added.
	* movement_rect.C, column.h, column.C: Use it.
	* cdaisy.C: include it.

2012-06-07  Per Abrahamsen  <pa@plen.ku.dk>

	* volume_poly.C: New model.
	* Makefile (MODELS): Added.

2012-05-25  Per Abrahamsen  <pa@plen.ku.dk>

	* rootdens_growth.C: New model.
	* Makefile (MODELS): Added.

2012-05-22  Per Abrahamsen  <pa@plen.ku.dk>

	* root_system.h, root_system.C (Density): Made it a state variable.
	(check): Take geometry argument to check size of Density.
	* vegetation.h, vegetation_permanent.C, vegetation_crops.C:
	* crop.h, crop_std.C, crop_simple.C, column.C (check): Update callers.

	* bioclimate_std.C (check): Check screen height.

2012-05-03  Per Abrahamsen  <pa@plen.ku.dk>

	* solver.h (Solver::build_matrix): Use mapped vector instead of
	coordinate vector, to circumvent ublas bug exposed by newer
	compilers.

2012-04-24  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.11 released.

2012-04-24  Per Abrahamsen  <pa@plen.ku.dk>

	* transport_convection.C (flow): Update C after last small timestep.

2012-03-23  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.10 released.

2012-03-23  Per Abrahamsen  <pa@plen.ku.dk>

	* movement_solute.C, movement_solute.h (sink_sorbed): New
	parameter.

2012-03-22  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.09 released.

2012-03-21  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.08 released.

2012-03-21  Per Abrahamsen  <pa@plen.ku.dk>

	* field.h, field.C, column.h, column_std.C (tick_source)
	(tick_move): New "end" parameter for weather.
	* daisy.C (tick): Use it.

	* wsource_weather.C (find_sum_dt, data_dt, rain_dt): New functions.
	(suggest_dt): use it.

2012-03-21  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.07 released.

2012-03-20  Per Abrahamsen  <pa@plen.ku.dk>

	* gnuplot_vector.C: New model.
	* Makefile (MODELS): Add it.

2012-03-19  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.06 released.

2012-03-15  Per Abrahamsen  <pa@plen.ku.dk>

	* uzrichard.C (richard): Cleanup logic and bug fix.

	* uzrect_Mollerup.C (max_time_step_reductions): Increased default
	value to 16.
	(max_number_of_small_time_steps): Increased default value to 100000.

2012-03-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.05 released.

2012-03-12  Per Abrahamsen  <pa@plen.ku.dk>

	* transport_Mollerup.C (stabilizing_method): New parameter.
	* wsource_weather.C (max_rain): New parameter.
	* movement_solute.C (primary_transport): Fail in case of negative
	solution.
	* soil_water.C (drain): Downgrade negative drain message to debug.
	* all: Update callers.

2012-03-09  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.04 released.

2012-03-09  Per Abrahamsen  <pa@plen.ku.dk>

	* reaction_sorption.C (tick_soil): Clear out
	'S_sorption_secondary'.

2012-03-06  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.03 released.

2012-03-06  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (update_matrix): New function.
	(set_secondary, set_primary): Use it.
	* chemical_std.C, chemical.h (C_average): New function.
	(uptake): Use it.

2012-03-02  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.02 released.

2012-03-02  Per Abrahamsen  <abraham@dina.kvl.dk>

	* macro_std.C (tick): Fix spurious error message.

2012-02-29  Per Abrahamsen  <pa@plen.ku.dk>

	* sample/DrainDrying.dai: Removed directory and path.

	* uzrichard.C (max_time_step_reductions): Increased from 4 to 16.

2012-02-23  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.01 released.

2012-02-23  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (update_C): Don't calculate C for immobile chemicals.

2012-02-17  Per Abrahamsen  <pa@plen.ku.dk>

	* condition_weather.C (daily_air_temperature_above)
	(daily_precipitation_above): New models.

2012-02-13  Per Abrahamsen  <pa@plen.ku.dk>

	* ui_Qt_run.C, ui_Qt_run.C: Remove dead code.

2012-02-10  Per Abrahamsen  <pa@plen.ku.dk>

	* daisy.C (duration): Fix sign.

2012-01-25  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C: Support decompose in secondary domain.

2012-01-06  Per Abrahamsen  <pa@plen.ku.dk>

	* txt/daisy.bib: Removed duplicates.

2012-01-05  Per Abrahamsen  <pa@plen.ku.dk>

	* svat.C (DeclareComponent::load_frame): Added.

2012-01-03  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C: Explain "initial" a little better.

2011-10-24  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.00 released.

2011-10-21  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (solubility, solubility_infiltration_factor):
	New parameters.
	* chemical.h, chemical_std.C (infiltrate): New 'water' parameter.
	* chemistry_std.C (infiltrate): Adjust caller.

2011-10-17  Per Abrahamsen  <pa@plen.ku.dk>

	* number_plf.C: Enable use of variables, disable check.

	* biopore.C (B2M, M2B): New log variable.

2011-10-14  Per Abrahamsen  <pa@plen.ku.dk>

	* horizon.C (r_pore_min): New parameter.
	* chemical_std.C: Support adsorption in secondary domain.
	* adsorption.h, adsorption.C, adsorption_freundlich.C:
	* adsorption_langmuir.C, adsorption_linear.C, adsorption_vS_S.C:
	Ditto.

	* chemical_std.C (check): Better error message.

2011-08-05  Per Abrahamsen  <pa@plen.ku.dk>

	* xysource_expr.C (valid): New parameter.

2011-08-02  Per Abrahamsen  <pa@plen.ku.dk>

	* block.C, block.h, block_nested.C, block_nested.h (check): Handle
	in block.C exclusively.

2011-07-25  Per Abrahamsen  <pa@plen.ku.dk>

	* block.C (expand_reference): Use key frame.
	(name_sequence): Remove optimization.

2011-07-12  Per Abrahamsen  <pa@plen.ku.dk>

	* scopesel.C (multi): New model.

2011-07-04  Per Abrahamsen  <pa@plen.ku.dk>

	* pet_Hargreaves.C (tick, check): Check for has_min_max_temperature.
	* bioclimate_std.C (check): Check 'pet'.

2011-06-30  Per Abrahamsen  <pa@plen.ku.dk>

	* am.C (get_volatilization): Fix unix bug with volatilization of
	mineral fertilizer.

	* lexer_table.C (read_keywords): Don't ask for size of unknown
	keywords.
	* wsource_weather.C (relative_humidity): New log variable.
	(tick): Fix min/max temperature.

2011-06-23  Per Abrahamsen  <pa@plen.ku.dk>

	* treelog_child.h, treelog_child.C: New utility.
	* Makefile (OTHER): Add it.

2011-06-22  Per Abrahamsen  <pa@plen.ku.dk>

	* daisy.C (find_scope, scope_size): Removed.
	* program.h, program.C, daisy.h, daisy.C:
	* output.h, output.C (scopes): New function.
	* cdaisy.C (daisy_daisy_scope_extern_size)
	(daisy_daisy_scope_extern_get): Update.
	* column.h, column_std.C, field.h, field.C (initialize): Update.
	* number_soil.C (NumberByDepth): Ditto.

	* program_optimize.C: New model.
	* Makefile (MODELS): Add it.

	* program (initialize): Drop metalib argument.

	* destination.h, destination.C, fetch.C (error): Removed.
	* log_table.C (error, error_string): Removed.
	* log_extern.h, log_extern.C (error, Error): Removed.

	* summary.h, summary.C, summary_Rsqr.C (tick): New function.
	* log_select.C (done): Call it.
	* log.h, log.C, log_select.C, log_extern.C:
	* summary.h, summary.C, summary_Rsqr.C (find_scopes): New function.
	* output.C (find_extern_logs): Call it.

2011-06-21  Per Abrahamsen  <pa@plen.ku.dk>

	* submodeler.h: Use symbol instead of key.

	* summary_Rsqr.C: New model.
	* Makefile (MODELS): Added it.

	* log_table.C: Renamed from log_dlf.C.
	* Makefile (SPECIALS): Removed log_dlf.C.
	(MODELS): Added log_table.C

2011-06-20  Per Abrahamsen  <pa@plen.ku.dk>

	* lib/log.dai: Removed all time entries.

	* log_select.h, log_select.C, log_dlf.C, log_extern.C:
	* select.h, select.C, select_array.C: Cleanup.

2011-06-17  Per Abrahamsen  <pa@plen.ku.dk>

	* log_dlf.C: Cleanup.

	* dlf.C, dlf.h (add_syntax): New function.
	* log_harvest.C, log_dlf.C (load_frame): Use it.

	* scope.h, scope.C, block.C (can_extract_as): New virtual function.
	* block.C (number, name, flag): Support extracting models.
	(expand_string): Use it.
	* log_dlf.C (build_parameters): Ditto.
	* log_extern.C (LogExtern): Ditto.
	* scope_block.C: Removed.
	* Makefile (OTHER): Adjusted.

2011-06-16  Per Abrahamsen  <pa@plen.ku.dk>

	* log_regress.C, log_dlf.h: Removed.
	* log_table.C: Merged into log_dlf.C.
	* Makefile (MODELS): Updated.

	* chemical_std.C (tick_soil): Simplified domain exchange.

2011-06-06  Per Abrahamsen  <pa@plen.ku.dk>

	* wsource_weather.C (initialize_two): Better error message.

	* units.C, units.h (dry_soil_fraction): New function.
	* unit_model.C (dry soil fraction, ppm dry soil): New units.
	* bdconv.C (BD_convert): Use it.
	* select_volume.C, select_array.C (special_convert): Use it.

2011-06-01  Per Abrahamsen  <pa@plen.ku.dk>

	* xysource_profile.C: New model.
	* Makefile (MODELS): Add it.

2011-05-31  Per Abrahamsen  <pa@plen.ku.dk>

	* program_document.C (ModelCompare): Fix.
	(print_model): Print sample.

2011-04-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.99 released.

2011-04-26  Per Abrahamsen  <pa@plen.ku.dk>

	* uzlr.C (tick): Extra check of Theta.

	* movement_1D.C: Removed dead code.
	* uzrect_2x1.C: Ditto.

2011-04-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.98 released.

2011-04-20  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.97 released.

2011-04-19  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.96 released.

2011-04-19  Per Abrahamsen  <abraham@dina.kvl.dk>

	* wsource_table.C, wsource_table.h (temp_offset): New function.
	(lookup_month): Renamed from 'precip_correct'.
	(precip_correct): Adjusted.

2011-04-19  Per Abrahamsen  <pa@plen.ku.dk>

	* weatherdata.h, weatherdata.C (TempOffset): New parameter.

2011-04-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.95 released.

2011-04-18  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (infiltrate): Only warn of rate * dt > 1.001.

	* soil_water.C (tick_after): Handle inconistent h/Theta.

2011-04-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.94 released.

2011-03-08  Per Abrahamsen  <pa@plen.ku.dk>

	* program_batch.C (run): Wrong name used.

2011-03-07  Per Abrahamsen  <pa@plen.ku.dk>

	* GP2D.C: New utility.
	* Makefile (OTHER): Add it.

2011-03-03  Per Abrahamsen  <pa@plen.ku.dk>

	* program_rootmatch.C: New model.

	* program_document.C (print_document): Don't sort models.

2011-02-22  Per Abrahamsen  <pa@plen.ku.dk>


	* time.C, time.h (whole_days_between, whole_hours_between): Added
	'whole_prefix'.
	(fraction_hours_between): New function.
	* xysource_flux.C (load_when):
	* gnuplot_soil.C (initialize):
	* wsource_combine.C (source_tick, source_initialize):
	* wsource_const.C (WSourceBase):
	* wsource_table.C (source_tick):
	* daisy.C (Daisy, tick, duration):
	* wsource_weather.C (number_average, number_cloudiness, timestep):
	* timestep.C (-):
	* depth.C (DepthPLF::tick, DepthPLF::convert_to_plf):
	(DepthFile::tick, DepthPLF::initialize):
	* source.C (distance): Update callers.

	* wsource_weather.C (initialize_two): Handle case where both
	simulation and weather data starts at midnight the same day.

	* weatherdata.C, weatherdata.h (PrecipScale): Reinstantiated.
	* wsource_table.C. wsource_table.h (precip_correct): Use it.

2011-02-15  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.93 released.

2011-02-08  Per Abrahamsen  <pa@plen.ku.dk>

	* weather_source.C, weather_extra.C, weather_std.C, weather_simple.C:
	* weather_none.C, weather_hourly.C, weather_base.C, weather_base.h:
	* weather_old.C, weather_old.h: Removed.
	* Makefile: Updated.

	* wsowsource_weather.h, wsource_weather.C: New base model.

2011-02-03  Per Abrahamsen  <pa@plen.ku.dk>

	* program_hmovie.C: New model.
	* Makefile (MODELS): Added it.

2011-02-02  Per Abrahamsen  <pa@plen.ku.dk>

	* wsource_std.C: New model.
	* Makefile (MODELS): Added it.

	* time.C (tick_day): Fix leap year bug.

	* wsource_time.C: New model.
	* Makefile (MODELS): Added it.

	* Makefile, setup.nsi: Added ShowDaisyOutput

2011-01-20  Per Abrahamsen  <pa@plen.ku.dk>

	* all: Changed 'name' to 'objid' in all models.

2011-01-19  Per Abrahamsen  <pa@plen.ku.dk>

	* wsource_combine.C: New model.

2011-01-14  Per Abrahamsen  <pa@plen.ku.dk>

	* vcheck.C, vcheck.h (VCheck::MultiSize): New class.
	* weatherdata.C: Use it.
	* lexer_table.C, lexer_table.h: Parse keywords from frame.

2011-01-13  Per Abrahamsen  <pa@plen.ku.dk>

	* bioclimate_std.C: Dynamically match pet and difrad models to
	weather data.
	* column_std.C, column.h (tick, tick_source, suggest_dt):
	* field.C, field.h (tick_source):
	* daisy.C (tick): Allow weather to suggest timestep.

2010-12-20  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.92 released.

2010-12-20  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (infiltrate): Avoid assert if rate is too high.

2010-12-02  Per Abrahamsen  <pa@plen.ku.dk>

	* weather_std.C, weather_old.C, weather_extra.C, weather_base.C:
	* weather_base.h, weather_old.h:
	* weather.h (relative_humidity, has_relative_humidity): Removed.
	* svat_ssoc.C (tick): Update caller.

2010-11-29  Per Abrahamsen  <pa@plen.ku.dk>

	* all: Optimized case with many columns.

2010-11-26  Per Abrahamsen  <pa@plen.ku.dk>

	* weather_source.C: New model.
	* Makefile (MODELS): Added it.

2010-11-25  Per Abrahamsen  <pa@plen.ku.dk>

	* astronomy.C, astronomy.h: New utility.
	* Makefile (OTHER): Added it.
	* weather.h, weather.C, weather_base.h, weather_base.C:
	Moved astronomy stuff to astronomy.C.
	(daily_cloudiness): Removed.
	(ExtraterrestrialRadiation): Removed.
	(HourlyExtraterrestrialRadiation): Renamed ExtraterrestrialRadiation.
	* pet_Hargreaves.C (Pet): Update caller.

2010-11-24  Per Abrahamsen  <pa@plen.ku.dk>

	* wsource_table.C: New model.
	* Makefile (MODELS): Added it.

2010-11-23  Per Abrahamsen  <pa@plen.ku.dk>

	* wsource_base.h, wsource_base.C: New base model.
	* Makefile (SPECIALS): Added it.

2010-11-15  Per Abrahamsen  <pa@plen.ku.dk>

	* rootdens_PLF.C (Rootdens_PLF): Bug fix.

2010-11-12  Per Abrahamsen  <pa@plen.ku.dk>

	* vegetation_crops.C (DS_by_name): Interpret "all" as oldest crop.

2010-11-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.91 released.

2010-11-11  Per Abrahamsen  <pa@plen.ku.dk>

	* daisy.C, daisy.h (start): New member function.
	* cdaisy.C (daisy_daisy_start): Call it.

2010-11-09  Per Abrahamsen  <pa@plen.ku.dk>

	* wsource_const.C: New model.
	* Makefile (MODELS): Add it.

2010-11-01  Per Abrahamsen  <pa@plen.ku.dk>

	* wsource.C, wsource.h: New component.
	* Makefile (COMPONENTS): Add it.

2010-10-26  Per Abrahamsen  <pa@plen.ku.dk>

	* lexer_table.C, lexer_table.h: Use impl idiom.

2010-10-22  Per Abrahamsen  <pa@plen.ku.dk>

	* weatherdata.C, weatherdata.h: New utility.
	* Makefile (OTHER): Add it.

2010-10-20  Per Abrahamsen  <pa@plen.ku.dk>

	* weather_extra.C: New model.
	* weather.h, weather.C, weather_base.h, weather_base.C: Restructuring.

2010-10-14  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.90 released.

2010-10-14  Per Abrahamsen  <pa@plen.ku.dk>

	* OpenMI/daisywrapper.cs (SetValues): Don't always use the first
	value.
	* action_activity.C (sequence): New model.

	* source_std.C (reset_offset): New parameter.


2010-09-08  Per Abrahamsen  <pa@plen.ku.dk>

	* tertiary_biopores.C (tick_source): Don't ignore ice.

2010-09-07  Per Abrahamsen  <pa@plen.ku.dk>

	* xysource_flux.C (load): Allow plot of boundaries.

	* uzlr.C (tick): Make it work with ice.

	* parser_file.C (get_dimension): Return Attribute::None () for
	empty string.

2010-09-02  Per Abrahamsen  <pa@plen.ku.dk>

	* bioclimate_std.C (daily_rain_temperature): Rain is never below
	0.1 degrees.

2010-08-31  Per Abrahamsen  <pa@plen.ku.dk>

	* soil_heat.C, soil_heat.h, soil_water.C: Make ice run.

2010-08-27  Per Abrahamsen  <pa@plen.ku.dk>

	* groundwater_source.C: New model.

	* chemical_std.C (update_C): Avoid mixing primary and secondary
	domain if old values are adequate.

	* soil_water.C (infiltration): Also include tertiary water.

	* block.C, block.h (expand_string): Allow recursive expansion.

2010-08-13  Per Abrahamsen  <pa@plen.ku.dk>

	* chemistry_std.C (infiltrate): Don't infiltrate chemical with
	negligible water.

	* output.C, output.h (log_prefix): New parameter.
	* log*.C, log.h (initialize, initialize_common): Obey it.

2010-08-11  Per Abrahamsen  <pa@plen.ku.dk>

	* number_arit.C (NumberDivide): Division by [] don't change
	dimension.

2010-08-09  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.89 released.

2010-08-09  Per Abrahamsen  <pa@plen.ku.dk>

	* log_extern.C (initialize): Don't overwrite 'numbers'.

2010-08-06  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.88 released.

2010-08-05  Per Abrahamsen  <pa@plen.ku.dk>

	* cdaisy.C (daisy_daisy_start): Restored as dummy.

	* chemical_std.C (drain_secondary): New parameter.

2010-08-04  Per Abrahamsen  <pa@plen.ku.dk>

	* sample/dk-taastrup-hourly.dwf: Fix data for agrovand.
	* sample/dk-taastrup.dwf: Ditto.

	* biopore.C (biopore_to_primary): More robust formulation.

2010-06-28  Per Abrahamsen  <pa@plen.ku.dk>

	* xysource_flux.C (load_interval): Bux fix.  Only last value in
	interval was counted.

2010-06-21  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.87 released.

2010-06-21  Per Abrahamsen  <pa@plen.ku.dk>

	* bioclimate_std.C (canopy_water_below): New log variable.

2010-06-18  Per Abrahamsen  <pa@plen.ku.dk>

	* bioclimate_std.C (canopy_water_capacity, litter_water_capacity):
	New log variables.
	* lib/log.dai ("Surface water"): Added them.

2010-06-14  Per Abrahamsen  <pa@plen.ku.dk>

	* surface.C (LocalDetentionCapacity): New parameter.

2010-06-03  Per Abrahamsen  <pa@plen.ku.dk>

	* chemical_std.C (pass_below): New function.
	* chemical.h, chemical_std.C (adjust_tertiary): New function.

	* chemical.h, chemical_std.C (set_macro_flux): Removed.

2010-06-02  Per Abrahamsen  <pa@plen.ku.dk>

	* drain_lateral.C (tick): Simplify.

	* select.C (initialize): Multiply spec_dim with 'h' when using
	Handle::sum.
	* summary.h, summary_simple.C, summary_balance.C: Adjust.
	* fetch.h, fetch_pretty.h, fetch_pretty.C: Ditto.

2010-05-28  Per Abrahamsen  <pa@plen.ku.dk>

	* xysource_xycombine.C: New model.
	Makefile (MODELS): Add it.
	* scope_xysources.h, scope_xysources.C: New utility.
	* Makefile (OTHER): Add it.

2010-05-27  Per Abrahamsen  <pa@plen.ku.dk>

	* xysource_flux.C: New model.
	* Makefile (MODELS): Add it.

2010-05-26  Per Abrahamsen  <pa@plen.ku.dk>

	* lexer_soil.h, lexer_soil.C: New utility.
	* Makefile (OTHER): Add them.

2010-05-20  Per Abrahamsen  <pa@plen.ku.dk>

	* gnuplot_soil.C: New model.
	* Makefile (MODELS): Add it.

2010-05-19  Per Abrahamsen  <pa@plen.ku.dk>

	* surface.C (pond_section): New state variable.

2010-05-17  Per Abrahamsen  <pa@plen.ku.dk>

	* lexer_table.C, lexer_table.h: Support arrays.

2010-05-14  Per Abrahamsen  <pa@plen.ku.dk>

	* pet_FAO_PM.C (use_wet): Made default value 'true'.

2010-04-29  Per Abrahamsen  <pa@plen.ku.dk>

	* oldunits.C: Fix memory leak found by valgrind.
	* hydraulic.h, hydraulic.C (K_init): Ditto.
	* treelog_store.C (Implementation): Eliminated memory pig found by
	valgrind.

2010-04-19  Per Abrahamsen  <pa@plen.ku.dk>

	* biopore.h, biopore.C (biopore_to_primary, biopore_to_secondary):
	New functions.
	(biopore_to_matrix): Removed.
	* biopore_matrix.C (matrix_biopore_matrix): Update caller.
	(K_wall_relative): New parameter.
	(R_primary, R_secondary): Removed.

2010-04-15  Per Abrahamsen  <pa@plen.ku.dk>

	* chemistry.h, chemistry_std.C, chemistry_multi.C:
	* chemical.h, chemical_std.C (tick_source, suggest_dt): New functions.
	* column_std.C (tick_source): Call it.

	* chemistry_multi.C (none): New build-in parameterization.
	* lib/chemistry.dai (none): Removed.

2010-04-14  Per Abrahamsen  <pa@plen.ku.dk>

	* time.h, time.C (microsecond): New field.
	* timestep.h, timestep.C: Ditto.
	* daisy.C (tick): Use it.
	* lib/log.dai ("Time"): New log.

2010-04-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.86 released.

2010-04-13  Per Abrahamsen  <pa@plen.ku.dk>

	* canopy_simple.h, canopy_simple.C, canopy_std.h, canopy_std.C:
	* vegetation_permanent.C, crop_simple.C, crop_std.C:
	Made canopy constructors take BlockSubmodel arguments.

	* fetch.C (select_dimension): Initialize.

	* tortuosity_linear.C (h_wp): Made it const.

	* movement.h, movement.C (tick_source): New function.
	* column_std.C (tick_source): Call it.
	* soil_water.h, soil_water.C (S_forward, dt, sink_cell): New log
	variables.
	(tick_source, suggest_dt): New functions.
	* soil_water.C (drain): Call it.
	* biopore.h, biopore_matrix.C, biopore_drain.C (tick_source):
	(update_matrix_sink): New functions.
	* biopore_drain.C, biopore_matrix.C (update_matrix_sink): Adjust.
	* tertiary_biopores.C (tick_source): Call it.

2010-04-12  Per Abrahamsen  <pa@plen.ku.dk>

	* soil_water.h (h_all): New function.
	* tertiary_biopores.C (tick_source): New function.
	(tick): Use it.

2010-04-09  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.85 released.

2010-04-09  Per Abrahamsen  <pa@plen.ku.dk>

	* bioclimate_std.C (albedo): Made it logable.

	* weather_std.C (tick): Work with small timesteps.

	* log_dlf.C (contain_time_columns): "previous" is also a time column.

2010-04-09  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.84 released.

2010-04-08  Per Abrahamsen  <pa@plen.ku.dk>

	* nitrinitrification.h, nitrinitrification_soil.C:
	* nitrification_solute.C (tick): Remove dt.
	* soil.h, soil.C, horizon.h, horizon.C (nitrification): Update caller.
	* reaction_nit.C (tick_soil): Update caller.

2010-04-07  Per Abrahamsen  <abraham@dina.kvl.dk>

	* column_std.C, column.h, field.C, field.h (tick_source, suggest_dt):
	(tick_move): New functions.
	* column_std.C, column.h (tick): Removed.
	* field.C, field.h (tick_all): Removed.
	* daisy.C (tick): Update caller.

2010-04-07  Per Abrahamsen  <pa@plen.ku.dk>

	* drain.h, drain.C, drain_lateral.C (tick): No dt.
	* movement.C (tick_tertiary): Update caller.

	* chemical_std.C (surface_decompose_rate): Default to
	'canopy_dissipation_rate'.

	* daisy.h, daisy.C (tick_before, tick_columns, tick_after): Removed.
	* cdaisy.h, cdaisy.C (daisy_daisy_tick_before)
	(daisy_daisy_tick_columns, daisy_daisy_tick_after): Removed.

	* daisy.h, daisy.C (timestep): Removed.
	* condition_time.C: Update caller.
	* daisy.h, daisy.C (previous): Beginning of timestep.
	* log_checkpoint.C (done): Adjust.

	* field.h, field.C (tick_one): Removed.
	* daisy.h, daisy.C (tick_column): Removed.
	* cdaisy.h, cdaisy.C (daisy_daisy_tick_column): Removed.

2010-04-07  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.83 released.

2010-04-07  Per Abrahamsen  <pa@plen.ku.dk>

	* hydraulic_B_C_inverse.C (Hydraulic): Initialize K after other
	parameters.

	* time.h, time.C: Use symbols.
	* output.C (load_syntax): Update caller.

2010-04-06  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.82 released.

2010-04-06  Per Abrahamsen  <pa@plen.ku.dk>

	* vegetation_permanent.C (LAIfactor): New parameter.

2010-04-06  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.81 released.

2010-04-03  Per Abrahamsen  <pa@plen.ku.dk>

	* daisy.h, daisy.C: Moved content into 'impl'.
	* all: Update callers.

2010-04-01  Per Abrahamsen  <abraham@dina.kvl.dk>

	* movement_solute.h: Use boost::scoped_ptr.

2010-04-01  Per Abrahamsen  <pa@plen.ku.dk>

	* action_activity.C (doIt): Allow multiple actions per timestep.

	* bound.C, bound.h, volume.C, volume.h: Made it logable.
	* irrigate.C, irrigate.h: Ditto.
	* column_std.C (output): Log irrigation.

2010-03-31  Per Abrahamsen  <pa@plen.ku.dk>

	* field.h, field.C, column.h, column_std.C (irrigate): New function.
	(irrigate_overhead, irrigate_surface, irrigate_sunsoil): Removed.
	* action_irrigate.C, action_fertilize.C, action_extern.C:
	* action_table.C, action_crop.C: Update callers.

	* action_irrigate.C (irrigate_top): Removed obsolete action.

2010-03-30  Per Abrahamsen  <pa@plen.ku.dk>

	* irrigate.C, irrigate.h: New submodel.
	* solute.C, solute.h: New component.
	* Makefile (COMPONENTS, SUBMODELS): Add them.

	* bioclimate_std.C, bioclimate.h (tick): No chemistry.
	* column_std.C (tick): Add deposition here.

2010-03-29  Per Abrahamsen  <pa@plen.ku.dk>

	* geometry.h, geometry.C (mix, swap): Remove dt.
	* am.C, am.h, om.C, om.h (mix, swap): Remove dt.
	* organic.h, organic_std.C (mix, swap, fertilize): Remove dt.
	* organic_std.C (tick): Defluxify.
	* column.h, column_std.C (mix, swap, fertilize, spray):
	(pluck, harvest): Remove dt.
	* action_fertilize.C, action_table.C, action_extern.C, action_crop.C:
	* action_harvest.C, action_spray.C, action_tillage.C (doIt):
	Update caller.

	* soil_water.C (tick_before): Fluxify.
	* soil_water.C, soil_water.h (mix, swap, overflow): Remove dt.
	* bioclimate.h, bioclimate_std.C (add_tillage_water): Take amount
	instead of flux.
	* bioclimate_std.C (WaterDistribution): Defluxify.
	* column_std.C (overflow): Update caller.  Don't take dt.
	(mix, swap): Update caller.
	* column_std.C, column.h, field.C, field.h (set_porosity): Update
	caller.  Don't take dt.
	* action_tillage.C (ActionSetPorosity::doIt): Update caller.

	* bioclimate.h, bioclimate_std.C (clear): New function.
	* column_std.C (clear): Call it.
	* bioclimate_std.C (irrigate_subsoil_old, irrigate_overhead_old)
	(irrigate_surface_old, tillage_water_old): Remove.
	* bioclimate.C (output): Update.

	* chemistry_std.C, chemistry_multi.h, chemistry.h:
	* chemical_std.C, chemical.h (deposit): Use flux.
	* bioclimate_std.C (tick): Update caller.

	* chemistry_std.C, chemistry_multi.h, chemistry.h:
	* chemical_std.C, chemical.h:
	(incorporate, spray, dissipate, harvest, swap, mix): Remove dt.
	* chemical_std.C (tick_soil, tick_top): Fluxify.
	* column_std.C (mix, swap, irrigate_subsoil, fertilize, harvest)
	(pluck, spray): Update callers.

2010-03-28  Per Abrahamsen  <abraham@dina.kvl.dk>

	* column_std.C (tick, fertilize): Fluxify applied_DM and
	first_year_utilization in tick.

2010-03-27  Per Abrahamsen  <abraham@dina.kvl.dk>

	* movement_solute.C (divide_top_incomming): Avoid division with
	small number.
	* transport_Hansen.C (flow): Ditto.

	* vegetation_crops.C, vegetation_permanent.C, vegetation.h:
	* column_std.C, column.h, field.C, field.h (sow): Remove dt.
	* column_std.C (tick): Fluxify dt.
	* action_sow.C, action_crop.C (doIt): Update callers.

2010-03-26  Per Abrahamsen  <pa@plen.ku.dk>

	* weather_std.C (minimum_precipitation): New parameter.

	* bioclimate_std.C (WaterDistribution): Let dry ep limit
	transpiration and exfiltration, as determined by cover.

	* weather_base.C (air_pressure): Made it logable.

	* pet.h, pet.C (initialize, check): New virtual member functions.
	* pet_FAO_PM.C (G, N): New log variable.
	(use_wet, initialize, check): Made default value depend on weather.

2010-03-25  Per Abrahamsen  <pa@plen.ku.dk>

	* production.C, column_std.C, mactrans_std.C, macro_std.C (tick):
	Handle dt != 1.0.
	* reaction_denit.C (tick_soil): Ditto.

2010-03-24  Per Abrahamsen  <pa@plen.ku.dk>

	* select.C, select.h (multi): New parameter.
	* select.C, select.h, select_value.C, select_array.C (geometric):
	Removed handle.
	(done_small, done_print): Split from 'done'.
	* log_select.C (initial_done, done): Call them.
	* log_dlf.C (common_done): Update caller.
	* log_extern.C (done): Ditto.
	* fetch.C (initialize): Update caller.

	* mathlib.C, mathlib.h (first_order_change): New function.
	* chemical_std.C (divide_loss): New function.
	(tick_top): use them.

	* chemical_std.C (litter_decompose): New log variable.
	* lib/log-std.dai ("Field chemical"): Add it.
	* lib/log.dai ("Surface Chemicals"): Ditto.

2010-03-23  Per Abrahamsen  <pa@plen.ku.dk>

	* secondary.C, secondary.h (initialize): New function.
	* horizon.C (initialize_base): Call it. Note secondary domain water.

2010-03-22  Per Abrahamsen  <pa@plen.ku.dk>

	* tertiary_biopores.C (active_msg): New parameter.
	(update_active): Use it.
	(tick): Update caller.
	* tertsmall.h, tertsmall.C (update_active): Update prototype.
	* uzrect_Mollerup.C (tick): Update caller.

	* bioclimate_std.C (tillage_water): New log variable.
	(add_tillage_water): New function.
	* soil_water.C (overflow): Handle overflow of water when porosity
	is changed.
	* column_std.C (overflow): Handle water content higher than porosity.
	* column_std.C, column_std.h  (set_porosity, mix, flow): Use it.
	* field.C, field.h (set_porosity): Use it.

2010-03-21  Per Abrahamsen  <pa@plen.ku.dk>

	* log_dlf.C, log_dlf.h: Use char* for output symbols for speed.

	* chemical_std.C (decompose): Speed up.

	* biopore_matrix.C (matrix_solute): Don't remove negative amounts
	from negative storage.

2010-03-19  Per Abrahamsen  <pa@plen.ku.dk>

	* all: Avoid creating symbols within inner loops.

	* chemical_std.C (has_lag): Don't calculate lag if none is specified.

	* secondary.C (cracks::use_secondary): New parameter.

2010-03-18  Per Abrahamsen  <pa@plen.ku.dk>

	* reaction_sorption.C: New model.

2010-03-17  Per Abrahamsen  <pa@plen.ku.dk>

	* treelog_text.C, treelog_text.h, treelog_store.C, treelog_store.h:
	* treelog.C, treelog.h: Don't create unnecessary symbols.

	* oldunits.C (multiply): Speed up.

2010-03-16  Per Abrahamsen  <pa@plen.ku.dk>

	* gnuplot_time.C, gnuplot_xy.C (plot): Include "ls" required by gnuplot 4.4.

	* frame.h, frame.C, type.h, type.C: Parameters can now have
	citations.
	* hydraulic_B_C_inverse.C: Use it.

	* hydraulic_B_C.C, hydraulic_M_C.C: Add citations.

2010-03-15  Per Abrahamsen  <abraham@dina.kvl.dk>

	* hydraulic_B_C_inverse.C: New model.
	* Makefile (MODELS): Add it.

2010-03-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.80 released.

2010-03-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* program_osvaldo.C: New model.
	* Makefile (MODELS): Add it.

2010-03-08  Per Abrahamsen  <pa@plen.ku.dk>

	* organic.h, organic.C: Renamed from 'organic_matter'.
	* all: update users.

2010-03-05  Per Abrahamsen  <abraham@dina.kvl.dk>

	* unit_model.C ([mg N/kg dry soil]): Fix unit.

	* chemical_std.C (decompose_CO2_factor, decompose_lag_increment): Fix dimension.

	* bioclimate_std.C (WaterDistribution): Forgot to multiply with dt.

	* snow.C (tick): Pond is not a flux.
	(q_s, EvapSnowPack): Fix dimension.

2010-03-04  Per Abrahamsen  <pa@plen.ku.dk>

	* solver_cxsparse.C (solve): 64bit fix.

2010-03-03  Per Abrahamsen  <pa@plen.ku.dk>

	* mathlib.h (NAN): Renamed from NOT_A_NUMBER, use empty string
	instead of 0.
	* scope_id.C (ScopeID): Update caller.

	* macro_std.C (tick): 64bit fix.

2010-03-02  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.79 released.

2010-03-02  Per Abrahamsen  <abraham@dina.kvl.dk>

	* block.C: Expand references even when having a default value.

	* uzlr.C (tick): Multiplied with dt twice.

2010-03-01  Per Abrahamsen  <abraham@dina.kvl.dk>

	* weather_std.C (PAverage): Don't allow zero.

2010-02-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* surface.C (EpFactor): Same.
	* canopy_simple.C (EpFac): Change and document default value.

	* frame.h, frame.C, value.h, value.C: Values can now have
	descriptions and citations.
	* format_LaTeX.C, format_LaTeX.h, format.h (cite): New function.
	(see_page): Use it.
	* program_document.C (print_entry_value): Document values.

2010-02-25  Per Abrahamsen  <abraham@dina.kvl.dk>

	* litter.h, litter.C: Made it a component.
	* Makefile (MODELS, SUBMODELS): Adjusted.
	* column_std.C (Litter): New parameter.
	* vegetation_crops.C, vegetation_permanent.C, vegetation.h:
	Removed litter.
	* bioclimate.h, bioclimate_std.C: Adjusted.

	* chemistry.C, removed (require): Removed.
	* organic_std.C (check): Update caller.
	(tick): Assume unlimted NH4 and NO4 if not tracked.

2010-02-24  Per Abrahamsen  <abraham@dina.kvl.dk>

	* unit_model.C: Fix several units.

	* chemical_std.C: Keep track of chemicals in litter.
	* chemical.h, chemistry.h, chemistry_std.C, chemistry_multi.C:
	* bioclimate.h, bioclimate_std.C, column_std.C: Adjusted.

2010-02-23  Per Abrahamsen  <abraham@dina.kvl.dk>

	* log_harvest.C (match): Fix dimensions.

	* vegetation_crops.C (litter_vapor_flux_factor, litter_water_capacity):
	New parameters.

2010-02-22  Per Abrahamsen  <abraham@dina.kvl.dk>

	* organic_std.C (top_DM): New log variable.
	* organic_matter.h, organic_none.C, am.h, am.C: Export it.
	* organic_std.C (active_groundwater): Removed obsolete parameter.

2010-02-16  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.78 released.

	* exercises: Fix answers.

2010-02-15  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.77 released.

2010-02-15  Per Abrahamsen  <abraham@dina.kvl.dk>

	* unit_model.C (pF): Bug fix.

2010-02-04  Per Abrahamsen  <abraham@dina.kvl.dk>

	* program_document.C: Fix references to "component".
	(docmodel): New model.

	* toplevel.C (run_program): Don't run incomplete programs.

2010-02-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.76 released.

2010-02-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* lib/log-std.dai ("Field nitrogen"): Duplicate immobilization removed.

	* Version 4.75 released.

2010-02-02  Per Abrahamsen  <abraham@dina.kvl.dk>

	* drain_lateral.C: Renamed from 'drain_Hooghoudt.C'.
	* Makefile (MODELS): Adjusted.

2010-02-01  Per Abrahamsen  <abraham@dina.kvl.dk>

	* lib/log-std.dai ("Field nitrogen"): Don't distinguish between
	NO3 and NH4.

	* soil_water.C (tick_after): Introduce h_fudge to compensate
	discontinour conductivity curve.

2010-01-28  Per Abrahamsen  <abraham@dina.kvl.dk>

	* chemical_std.C (N): New nutrient parameterization.
	(NO3, NH4): Derive from 'N'.

	* secondary.C, secondary.h (K, h_lim): No longer take soil or cell
	arguments.
	* horizon.C, horizon.h (K): New function.
	* number_soil.C (NumberSoilK::value): Use it.
	* soil.C (K): Update caller.

2010-01-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* program_document.C (print_component): Special treatment of
	"component".

	* select_content.C: Change to work when loging multiple columns.

2010-01-25  Per Abrahamsen  <abraham@dina.kvl.dk>

	* log_select.C (document_entries): Use base_name instead of type_name.

	* select.C (documentation): Use this field to explcitly document
	select entries.
	* lib/log.dai, lib/log-std.dai: Update.

2010-01-22  Per Abrahamsen  <abraham@dina.kvl.dk>

	* tertiary.C, tertiary.h: Derive from 'ModelDerived' instead of
	'ModelFramed'.
	* movement.C (output_base): Adjust.

	* drain_Hooghoudt.C: Renamed from 'tertiaty_pipes.C'.
	* drain.h, drain.C: New component.
	* Makefile (COMPONENTS, MODELS): Adjusted.
	* movement.C, movement.h: Support it.

	* movement_rect.C (drainpoints): Renamed from 'drain'

2010-01-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* biopore.C, biopore.h (top_density): New function.
	* tertiary_biopores.C (infiltrate, solute): Use it.

	* biopore_drain.C, biopore_matrix.C, tertiary_biopores.C (capacity):
	(infiltration_capacity): Renamed, no infiltration capacity for
	biopores that does not reach the surface.
	* tertiary_biopores.C (infiltrate): Update caller.

2010-01-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* scope_soil.C (number): Adjust assertion to allow external cells.

2010-01-09  Per Abrahamsen  <abraham@dina.kvl.dk>

	* movement_rect.C (report, seen, tick): Report first problem to screen.

	* gnuplot_base.C (plot_header): Reset all gnuplot parameters.

2010-01-06  Per Abrahamsen  <abraham@dina.kvl.dk>

	* unit_model.C ([ug/ga/d], [ug/ga/h]): New units.

	* hydraulic.C (DeclareComponent): Allow citations.

	* hydraulic_M_vGp.C (DeclareModel): Add proper citation.

2010-01-05  Per Abrahamsen  <abraham@dina.kvl.dk>

	* soil_water.C (drain): Check size of S_drain, not S_root.
	* macro_std.C (tick): Allow single cell simulation.

2009-12-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* toplevel.C (command_line): Bug fix.

	* select.C (initialize): Added explicit braces for gcc 4.3 warning.
	* fetch.C (initialize): Ditto.
	* root_system.C (water_uptake): Ditto.
	* log_all.C (insert_active, open_derived_type, open): Ditto.
	* om.C (get_initial_C_per_N): Ditto.
	* parser_file.C (convert): Ditto.
	* units.C (can_convert, can_convert): Ditto.
	* reaction_equil.C (tick_domain): Ditto.
	* cdaisy.C (daisy_scope_number_name): Ditto.
	* scope_soil.C (number): Ditto.
	* organic_std.C (partition): Ditto.
	* boolean_number.C: Ditto.

	* lexer_table.C: (get_entry): Qualify 'strchr'.

	* printer_file.C (print_entry): Explicit parentheses.

	* gnuplot_base.C (interactive): Device should not be a string
	literal.

2009-12-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* svat_pmsw.C (RTSAFE_DT): Avoid calling perror.
	* surface.h: Include <memory>.
	* iterative.h (Newton): Avoid having D as a reference.
	* path.C, lexer_data.C: Include <cstdlib>
	* lexer_table.C, toplevel.C: Include <cstring>
	* macro.h: Include <memory>
	* chemical_std.C (update_C): Fix duplicate name.
	Reported by Xujun Han.

	* librarian.C, librarian.h (Declare::~Builder): Defined.

	* column.h (sow): Fixed formal parameter name.
	Reported by Xujun Han.

2009-12-14  Per Abrahamsen  <abraham@dina.kvl.dk>

	* number_const.C (x): Made it a top level model.

2009-12-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* geometry.C (swap): Fix case where 'middle' is not actually in
	the middle.

2009-12-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* groundwater_file.C (offset): New parameter.

2009-12-10  Mikkel Mollerup  <mmo@life.ku.dk>

	* draineqd.h, draineqd.C: New component.
	* Makefile (COMPONENTS): Add it.
	* tertiary_pipes.C: Use it.

2009-12-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* gnuplot_time.C (plot): Improve error message for more than 2
	dimensions.

2009-12-02  Per Abrahamsen  <abraham@dina.kvl.dk>

	* lexer_table.C (read_header): Let 'original' overwrite dimension
	line.
	(get_entries_raw): Skip data lines beginning with '#'.

2009-12-01  Per Abrahamsen  <abraham@dina.kvl.dk>

	* timestep.h, timestep.C (year): Removed.
	* condition_time.C (Condition): Update caller.

2009-11-20  Per Abrahamsen  <abraham@dina.kvl.dk>

	* ABAeffect_exp.C, ABAeffect.C, ABAeffect.h: Integrate into stomatacon.
	* Stomata.h, stomatacon.C, stomatacon_SHA.C: Integrated ABA effect.
	* photo_Farquhar.C, photo_Farquhar.h: Update caller.

2009-11-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* stomatacon.h, stomatacon.C (BB_base) New base model.
	* stomatacon_Leuning.C, stomatacon_BB.C, stomatacon.C: Merged.
	* Makefile (MODELS): Updated.

2009-11-17  Per Abrahamsen  <abraham@dina.kvl.dk>

	* photo_Farquhar.C (b, m): Removed parameters.
	* stomatacon_BB.C, stomatacon_Leuning.C (b, m): Added.
	* stomatacon_SHA.C, stomatacon.h: Adjusted.

2009-11-16  Per Abrahamsen  <abraham@dina.kvl.dk>

	* reaction_Jarvis99.C (Mmax_tillage_factor): New parameter.
	* organic_std.C (tillage_age): Removed.
	* column_std.C (tillage_age): New state variable.

2009-11-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* uzrect_Mollerup.C (tick): Allow more iterations for converegnce
	for smaller timesteps.

2009-11-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* biopore_matrix.C (allow_upward_flow): New flag.

2009-11-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* uzrect_Mollerup.C: Use new 'condedge' component.

2009-11-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* soil.C, soil.h (anisotropy_edge): New function.
	(anisotropy_cell): Renamed from anisotropy.
	* uzrect_Mollerup.C (anisotropy_factor):
	* uz1d.h (K):
	* tertiary_pipes.C (K_to_pipes):
	* groundwater_pipe.C (K_to_pipes):
	* biopore_matrix.C (find_matrix_sink):
	* biopore_drain.C (update_matrix_sink): Update caller.

2009-10-29  Per Abrahamsen  <abraham@dina.kvl.dk>

	* condedge.C, condedge.h: New component.

2009-10-28  Per Abrahamsen  <abraham@dina.kvl.dk>

	* all: Tried once again to make relative area logging work.

	* attribute.C (type_name): Fix names.

	* log_alist.C (close_named_entry): Close entry.

2009-10-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* parser_file.C (load_list): Make [] equal 'Attribute::None ()'
	when declaring an 'Attribute::Number'.

2009-10-23  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.74 released.

2009-10-22  Per Abrahamsen  <abraham@dina.kvl.dk>

	* log.h, log_harvest.C, log_select.h, log_select.C:
	* log_alist.h, log_alist.C (open_shallow, close_shallow): New
	member functions.
	* im.C (output): Use it.

2009-10-19  Per Abrahamsen  <abraham@dina.kvl.dk>

	* im.C (output): Allow base names.

2009-10-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* source_expr.C, source_std.C (load): Modify dimension for
	accumulated values.

	* oldunits.C (multiply): Handle case where one unit is "per" the
	other unit.

2009-10-17  Per Abrahamsen  <abraham@dina.kvl.dk>

	* number_lisp.C (if): New model.

	* unit_model.C ([ug/l]): New unit.

	* source_expr.C (valid): New parameter.

2009-10-16  Per Abrahamsen  <abraham@dina.kvl.dk>

	* unit_model.C ([kg/Pa], [ng/kPa], [ng/MPa]): New units.

2009-10-15  Per Abrahamsen  <abraham@dina.kvl.dk>

	* gnuplot_utils.C, source.h, source_combine.C, source_file.C:
	* source_file.h, source_merge.C:
	* gnuplot_time.C (accumulate): New parameter.

	* all: The new 'area' column parameter replace 'size', and affects
	logging multiple columns.

2009-10-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* sample/dk-soil.dai ("Jyndevad Ap", "Jyndevad C"): Use B_BaC
	instead of M_vG.

2009-10-09  Per Abrahamsen  <abraham@dina.kvl.dk>

	* tertiary_pipes.C: New model.

2009-10-05  Per Abrahamsen  <abraham@dina.kvl.dk>

	* uzrect_Mollerup.C (K_average_horizontal): New parameter.

2009-09-28  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.73 released.

2009-09-23  Per Abrahamsen  <abraham@dina.kvl.dk>

	* iterative.C (solve): Adjust criteria.

	* fao.C (AirDensity, ETaero): Fix units.
	* fao.C, fao.h (RefPenmanMonteithWet): Add rb parameter.
	* pet_FAO_PM.C (use_wet, rb): New parameters.

2009-09-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.72 released.

2009-09-16  Per Abrahamsen  <abraham@dina.kvl.dk>

	* bioclimate_std.C (WaterDistribution): More convergense criteria, 
	stabilise gs.

	* ABAprod_uptake.C (production): Don't warn about ABA when h is below WP.

	* crop, vegetation, bioclimate, svat: Divide stomata conductance
	into shadow and sunlit leaves.

2009-09-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* all: Read O2 from weather. Made CO2 relative to atmospheric pressure.

2009-09-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* reaction_Morgan98.C (DeclareModel): Fix BibTeX citation.
	* aom.C (DeclareParam): ditto.

2009-09-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.71 released.

2009-09-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* all: More Farquhar and SSOC work.

2009-09-04  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.70 released.

2009-09-04  Per Abrahamsen  <abraham@dina.kvl.dk>

	* photo_Farquhar.C (GSTModel): Don't multiply b with LA.
	(gs_vector): Don't multiply with LA.
	(pn_vector, hs_vector, cs_vector, Gamma): New log variables.

	* log_alist.C (open_derived): Ignore LogOnly objects.

2009-09-01  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.69 released.

2009-09-01  Per Abrahamsen  <abraham@dina.kvl.dk>

	* crop_std.C (sunlit, reserved): Split out from 'LeafPhot' for
	logging purposes.
	* photo_Farquhar.C (sun_LAI, sun_LAI_vector, fraction_sun)
	(gs_sun_vector): Removed.

	* photo_Farquhar.C (assimilate): Use absolute difference for
	convergence.

2009-08-27  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.68 released.

2009-08-27  Per Abrahamsen  <abraham@dina.kvl.dk>

	* action_extern.C (extern_subsoil): New model.

2009-08-20  Per Abrahamsen  <abraham@dina.kvl.dk>

	* photo_Farquhar.C: Spelling.

2009-08-19  Per Abrahamsen  <abraham@dina.kvl.dk>

	* chemical_std.C (M_secondary): New log variable.

2009-08-17  Per Abrahamsen  <abraham@dina.kvl.dk>

	* unit_model.C (um): New unit.

2009-08-14  Per Abrahamsen  <abraham@dina.kvl.dk>

	* water.C, water.h: New utility.
	* Makefile (OTHER): Added it.

2009-08-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* secondary.C (cracks): New model.

2009-08-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* secondary.h, secondary.C (K): New virtual member function.
	Also, new parameter in the 'pressure' model.
	(none): Removed.
	* soil.h, soil.C (alpha, h_secondary): New member functions.
	(secondary): Removed.
	* chemical_std.C (tick_soil): Update caller.
	* biopore_matrix.C (matrix_biopore_matrix): Ditto.
	* soil_water.C (tick_after): Ditto.

2009-08-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.67 released.

2009-08-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* action_extern.C (Action::doIt): Divide by water instead of multiply.

2009-07-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.66 released.

2009-07-17  Per Abrahamsen  <abraham@dina.kvl.dk>

	* svat_ssoc.C (z_0b): New parameter.
	* resistance.C (z_0): Use it.
	(default_z_0b): Renamed from 'z_0b'.

2009-07-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* block_nested.C: New utility.
	* Makefile (OTHER): Add it.

2009-07-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* attribute.C, attribute.h: Renamed from value.
	* Makefile (OTHER): Update.
	* value.C, value.h (OTHER): Renamed from val.
	* Makefile (OTHER): Update.
	* all: Update callers.

2009-07-07  Per Abrahamsen  <abraham@dina.kvl.dk>

	* alist.C, alist.h, avalue.C, avalue.h: Removed.
	* frame.C: Removed references.
	* Makefile (OTHER): Removed

2009-07-05  Per Abrahamsen  <abraham@dina.kvl.dk>

	* val.C: New utility.
	* Makefile (OTHER): Added it.

	* avalue.C, avalue.h: New utility.
	* alist.C: Use it.
	* Makefile (OTHER): Added it.

	* syntax.C: Removed.
	* Makefile (OTHER): Updated.

2009-07-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* bioclimate_std.C (DeclareModel): Fixed names for some log variables.
	* pet.C (load_frame): Renamed from 'load_syntax'.

	* type.h, type.C: New utility.
	* Makefile (OTHER): Add it.
	* frame.C: Use it.

2009-07-02  Per Abrahamsen  <abraham@dina.kvl.dk>

	* model.C, model.h: Split into extra files.
	* model_logable.h, model_logable.C: New utility.
	* model_framed.h, model_framed.C: New utility.
	* model_derived.C, model_derived.h: New utility.
	* Makefile (OTHER): Added them.
	* all: Update includes.

2009-06-30  Per Abrahamsen  <abraham@dina.kvl.dk>

	* ut_scope_exchange.C (TEST): Update Scope API.

2009-06-29  Per Abrahamsen  <abraham@dina.kvl.dk>

	* syntax.C, syntax.h, frame.C: Implement order in frame only.

	* log_dlf.C (build_parameters): Handle missing
	'parameter_names' (poorly).

2009-06-24  Per Abrahamsen  <abraham@dina.kvl.dk>

	* time.C, time.h (now): New static member function.

2009-06-22  Per Abrahamsen  <abraham@dina.kvl.dk>

	* all: Made 'Metalib' const most places.

2009-06-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* block.h: Derive from Scope.

2009-06-17  Per Abrahamsen  <abraham@dina.kvl.dk>

	* frame.C, frame.h, alist.C, alist.h (subset): Made Metalib const.
	* all: Made Metalib const.

	* printer.C, printer.h: Not a component.
	* printer_file.C, printer_file.h: Not a model.
	* Makefile: Adjust.

	* mathlib.h: Use 'std::' namespace for buildin math functions.
	* select_value.C (add_result): Ditto.

2009-06-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.65 released.

2009-06-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* scope_soil.h (cell): Make it private.
	* equil_linear.C, equil_langmuir.C, equil_goal.C, equil.h (find): Take cell argument.
	* transform_equil.C, reaction_equil.C (tick): Update caller.
'
	* scope_soil.h, scope_soil.C (set_colloid): New parameter.
	* reaction_equil.C (tick): Update caller.

	* reaction_equil.C (primary, surface): New flags.
	(tick_soil, tick_surface): New functions.

2009-06-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* scope_soil.C, scope_soil.h: Allow pseudo-cells.
	* all: Update callers.

	* chemical_std.C, chemical.h, chemistry.h, chemistry_std.C:
	* chemistry_multi.C, column_std.C (tick_surface): Add pond argument.

2009-05-27  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.64 released.

2009-05-27  Per Abrahamsen  <abraham@dina.kvl.dk>

	* root_system.C, root_system.h (tick_dynamic): Renamed from 'tick'
	* crop_simple.C, crop_std.C: Update caller.
	* vegetation_permanent.C (tick): Call 'RootSystem::tick_dynamic'.

2009-05-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* reaction_boundrel.C: New model.
	* Makefile (MODELS): Add it.
	* chemical.h, chemical_std.C (surface_release):  New log variable.
	* reaction_colgen.h, reaction_colgen.C, reaction_Jarvis99.C
	* reaction_Morgan98.C, reaction_Styczen88.C: Use it.
	* chemical_std.C (surface_immobile, surface_solute): New log variables.
	* chemical.h, chemical_std.C, chemisty.h, chemisty_std.C
	* chemistry_multi.C (tick_surface): New function.
	* column_std.C (tick): Call it.

2009-05-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* vcheck.h, vcheck.C: Don't use exceptions.
	* all: Update callers.

2009-05-05  Per Abrahamsen  <abraham@dina.kvl.dk>

	* path.C (set_directory): Don't append current directory to
	currect directory, and don't change it if 'chdir' failed.

2009-04-29  Per Abrahamsen  <abraham@dina.kvl.dk>

	* daisy.C (tick_after): Set 'finished' before calling logs, in
	order to get the 'finished' condition to work.

2009-04-28  Per Abrahamsen  <abraham@dina.kvl.dk>

	* fetch_pretty.C, fetch_pretty.h: New submodel.
	* Makefile (SUBMODELS): Added it.

2009-04-21  Per Abrahamsen  <abraham@dina.kvl.dk>

	* log_regress.C: New model.

2009-04-16  Per Abrahamsen  <abraham@dina.kvl.dk>

	* groundwater_file.C (initialize): Calculate initial groundwater depth.

2009-04-15  Per Abrahamsen  <abraham@dina.kvl.dk>

	* log_table.C: Inherit from 'log_dlf.C'.

	* log_select.C (description): Only store user value.
	* dlf.C (log_description): Don't print empty description.

2009-04-14  Per Abrahamsen  <abraham@dina.kvl.dk>

	* value.h (Sequence): Split into 'Variable', 'CanopyCells',
	'CanopyEdges', 'SoilCells', and 'SoilEdges'.
	(flexible_size): New function.
	* all: Update callers.

2009-04-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* log_dlf.h, log_dlf.C: New base.
	* Makefile (SPECIALS): Add it.

2009-04-02  Per Abrahamsen  <abraham@dina.kvl.dk>

	* log.C, log.h (Log::print_dlf_header): Removed.

	* select_volume.C (SelectVolume::done): Removed.

	* all: Split 'Frame::add' into 'Frame::set' and 'Frame::declare'.

2009-03-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.63 released.

2009-03-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* submodeler.h (template): Bug fix.

2009-03-25  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.62 released.

2009-03-25  Per Abrahamsen  <abraham@dina.kvl.dk>

	* bioclimate_std.C (BioclimateStandard::tick): Make wind speed
	correction work for tall vegetation.

2009-03-24  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Makefile (MODELS): Removed 'crop_simple.C'.
	(DISABLED): Moved it here.

2009-03-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.61 released.

2009-03-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* geometry.C (Geometry::set_soil): Made it more numerically robust.

	* frame.C (Frame::subset): Handle object types.

	* production.C (Production::tick): Daily leaf growth was defined
	in terms of roots.

	* lib/log-std.dai ("Field nitrogen", "Soil nitrogen")
	("Field chemical", "Soil chemical"): Take 'unit' parameter.

	* tertiary_biopores.C: Removed 'enable_solute' parameter.

2009-03-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* reaction_Morgan98.C: New model.
	* reaction_colgen.C, reaction_colgen.h: New base.
	* Makefile (MODELS, SPECIALS): Added them.

2009-03-05  Per Abrahamsen  <abraham@dina.kvl.dk>

	* rainergy.C, rainergy.h: New component.
	* Makefile (COMPONENTS): Added.

2009-03-04  Per Abrahamsen  <abraham@dina.kvl.dk>

	* ponddamp.h, ponddamp.C: New component.
	* reaction_Styczen88.C: New model.
	* Makefile (COMPONENTS, MODELS): Added.

2009-02-19  Per Abrahamsen  <abraham@dina.kvl.dk>

	* exercises/Exercise01.dai (SBarley_management): Fix fertilize.
	* exercises: Remove path.

2009-02-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* library.C, library.h (Library::frame): Removed unused function.

	* submodeler.h (map_submodel, map_submodel_const): Removed
	unneccesary copy.

	* all: Split model and submodel in alist/frame/block.

	* Version 4.60 released.

2009-02-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* log.C (Log::check_entry): Correctly exit loop.
	* lib/OpenMI.dai (Lower_boundary_input): Give "NO3
	conc. groundwater" a default value.
	* all: Remove Value::Library, add Value::Reference and Value::Scalar.

2009-02-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* toplevel.C (Toplevel::load_frame): Better default for 'path'.

	* Version 4.59 released.

	* log_extern.C: Reanable 'parameter_names'.
	* cdaisy.C: Replace alist and syntax with frame.

2009-02-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.58 released.

2009-02-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* all: Use Frame instead of Syntax and AttributeList most places.

2008-12-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* all: Reorganized scopes.

2008-12-16  Per Abrahamsen  <abraham@dina.kvl.dk>

	* syntax.C (entries): Don't overwrite argument.

2008-12-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* reaction_Jarvis99.C: Renamed from 'reaction_MACRO.C'.

	* movement_1D.C (Movement1D::tick_water): Water transport failures
	now only reported in daisy.log and summary.

	* movement.C, movement.h (water_failure_level)
	(solute_failure_level): New log variables.
	(Movement::clear): New function.
	* column_std.C (ColumnStandard::clear): Call it.
	* lib/log.dai (Failure): New log paramaterization.

	* scope_soil.C (ScopeSoil::set_old_water, ScopeSoil::set_domain):
	New member functions.
	* reaction_equil.C (secondary): New parameter.

2008-12-09  Per Abrahamsen  <abraham@dina.kvl.dk>

	* block.C: More systematic use of parent scopes.

2008-12-05  Per Abrahamsen  <abraham@dina.kvl.dk>

	* lib/log-std.dai ("Soil chemical"): Fixed "Decompose" sign.

	* reaction_equil.C (colloid): New parameter.

2008-11-27  Per Abrahamsen  <abraham@dina.kvl.dk>

	* sample/genweather.dai: New sample setup.
	* sample/Makefile (SETUPS): Added it.

	* lib/log-std.dai ("Field chemical"): Include content of tertiary
	domain in balance.

	* mathlib.C (balance): Don't ignore 'noise'.
	* imvec.C (IMvec::add_value): Accumulate, not overwrite..

2008-11-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* lib/log-std.dai ("Field nitrogen"): Log surface to drain and
	tertiary content.

2008-11-25  Per Abrahamsen  <abraham@dina.kvl.dk>

	* biopore.h (add_solute): Made private.
	* biopore.h, biopore.C (solute_infiltration): New log variable.
	* biopore.c, biopore.C, biopore_matrix.C (solute_infiltrate): New
	virtual member function.
	* tertiary_biopores.C (TertiaryBiopores::solute): Update caller.

2008-11-21  Per Abrahamsen  <abraham@dina.kvl.dk>

	* value.h, value.C: New utility.
	* all: Use it.

2008-11-20  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.57 released.

2008-11-20  Per Abrahamsen  <abraham@dina.kvl.dk>

	* uzrichard.C (UZRichard::q_darcy): Bug fix with multiple columns.

2008-11-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* lib/log.dai ("Crop Production"): Log max water stress.

2008-11-17  Per Abrahamsen  <abraham@dina.kvl.dk>

	* chemical_std.C (ChemicalStandard::tick_soil): Supress warning
	for numeric uncertainty.

2008-11-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 5.56 released.

2008-11-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* OpenMI: If a quantity is exported or imported for multiple
	columns, the columns are merged into a single element set.

2008-11-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.55 released.

2008-11-12  Birgitte Gjettermann  <bgj@kvl.dk>

	* lib/log.dai ("Crop Photosynthesis"): added dimensions

2008-11-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.54 released.

2008-11-06  Per Abrahamsen  <abraham@dina.kvl.dk>

	* program_GP2D.C: New program.

2008-11-04  Per Abrahamsen  <abraham@dina.kvl.dk>

	* path.C, path.h (set_path, parse_path): New member functions.

2008-10-30  Per Abrahamsen  <abraham@dina.kvl.dk>

	* reaction_filter.C (fc_primary, fc_secondary): Fix units.
	* transport_convection.C (TransportConvection::flow): Update C
	between sink and flux.

2008-10-29  Per Abrahamsen  <abraham@dina.kvl.dk>

	* weather_std.C (WeatherStandard::initialize): Added warning for
	RelHum or DiffRad and long timesteps.

	* bioclimate_std.C, bioclimate.h (total_ea): New virtual member.
	* harvest.C, harvest.h (water_productivity): New member.
	* harvesting.C, harvesting.h (total_water_use): New state variable.
	(water_use): New member function.
	* crop_std.C (tick): Call it.

2008-10-24  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.53 released.

2008-10-20  Per Abrahamsen  <abraham@dina.kvl.dk>

	* log_checkpoint.C: Save state as program.
	
	* unit_model.C, unit_model.h: Split out from 'unit.C' and 'unit.h'
	* Makefile (OTHER, COMPONENTS): Adjust.
	* im.C, am.C, units.C, metalib.C: Adjust.

	* photo.h, photo.C (min_PAR): New parameter and virtual member
	function. 
	* crop_std.C (CropStandard::find_stomata_conductance): Use it.
	* bioclimate_std.C (max_svat_iterations):
	( max_svat_absolute_difference): New parameters.
	* svat_ssoc.C (maxTdiff, maxEdiff, max_iteration): New parameters.

2008-10-15  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.52 released.

2008-10-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* path.C (Path::set_directory): Canonicalize directory.

2008-10-09  Per Abrahamsen  <abraham@dina.kvl.dk>

	* unit.C ("rad", "dg", "new dg"): Added units.

2008-10-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.51 released.

2008-10-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* unit.C (UnitBaseSyntax): Added 'Syntax::Unknown ()' and
	'Syntax::Error ()'.
	(UnitSIFactorSyntax): Add [mm^-1].

2008-10-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* all: Use 'symbol' even more places.

2008-10-01  Per Abrahamsen  <abraham@dina.kvl.dk>

	* svat_pmsw.C: Removed dead code.
	* bioclimate_std.C, bioclimate.h (get_net_throughfall): Removed.
	(canopy_ea, soil_surface_ea, total_ep): New virtual members.
	* svat.h, svat_pmsw.C, svat_ssoc.C, svat_none.C (tick): Don't take
	'Pet' or 'Surface' arguments.
	* bioclimate_std.C (WaterDistribution): Update caller.
	
	* action_sow.C ("plant_distance"):  New alias for "row_width".

2008-09-30  Per Abrahamsen  <abraham@dina.kvl.dk>

	* unit.C (offset): New model.
	("dg C", "dg F"): New paramaterizations.
	
	* all: Use "symbol" many places.
	* symbol.h: Allow implicit convertions from 'std::string' and 'char*'.

2008-09-29  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.50 released.

2008-09-29  Per Abrahamsen  <abraham@dina.kvl.dk>

	* biopore.C, biopore.h (infiltration): New parameter.
	* biopore.C, biopore.h (infiltrate): Set it.
	* biopore.C, biopore.h (clear): New function.
	* biopore_drain.C, biopore_matrix.C (infiltrate): Adjust derived.
	* tertiary_biopores.C: Adjust callers.
	* lib/log-std.dai ("Field water"): Log it.
	("Field water balance"): Ditto.

2008-09-28  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.49 released.

2008-09-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* soil_water.C (initialize): Clear fluxes.
	* soil_water.C, soil_water.h (tick_before) Renamed from 'tick'.
	(SoilWater::mass_balance): New function.
	* column_std.C, movement_rect.C, movement_1D.C (tick): Update callers.

2008-09-25  Per Abrahamsen  <abraham@dina.kvl.dk>

	* photo.h, photo_GL.C, photo_Farquhar.C, photo_Farquhar.h
	(handle_N_stress, handle_water_stress): New virtual member function.

	* crpn.C (CrpN::update): Don't take 'enable_N_stress' argument.
	* crop_std.C (CropStandard::tick): Update caller.

	* svat_ssoc.C: New model.
	* vegetation, bioclimate, crop:  Use it.
	* lib/log.dai ("SSOC"): New log file.
	* unit.C (UnitSIFactorSyntax): Added SSOC units.

2008-09-24  Per Abrahamsen  <abraham@dina.kvl.dk>

	* solver_cxsparse.C (struct SolverCXSparse): Check arguments.

	* crpn.C (CrpN::update): Disabling N stress should not cause magic
	supply of N, as we may have disabled N stress here, in order to
	calculate it as part of the photosynthesis module.

2008-09-23  Per Abrahamsen  <abraham@dina.kvl.dk>

	* all: Got rid of the 'hourly_' prefix.

	* geometry.C, geometry.h (Geometry::access_content_interval): New
	function.
	* geometry.h (Geometry::content_interval): New template.

	* svat_pmsw.C: Removed USE_FILES code, cleaned up access to the
	soil water and soil heat modules.

	* root_system.C (RootSystem::tick): Move soil water root uptake
	and water stress days here.
	(RootSystem::water_uptake): From here.

2008-09-19  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.48 released.

2008-09-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* lib/log-std.dai ("Field water"): Also log water in biopores.

	* geometry.C, geometry.h (Geometry::access_content_height)
	(Geometry::access_content_hood): New member functions.
	* geometry.h (Geometry::content_at): Renamed to 'content_height'.
	(Geometry::content_hood): New member template function.
	(Access): New memeber interface class.
	(Accessor): New memeber template class.
	* all: Update callers.

	* canopy_simple.h (leaf_width): New parameter.
	* crop, vegetation: Make accessible.

2008-09-17  Per Abrahamsen  <abraham@dina.kvl.dk>

	* biopore_drain.C (BioporeDrain::matrix_biopore_drain): Scale S
	with fraction of cell in interval.
	* biopore_matrix.C (BioporeMatrix::matrix_biopore_matrix): Ditto.

	* biopore.C (Biopore::initialize_base): Include all all cells that
	overlap interval, not just those whose center is within the
	interval.

	* select_number.C (output_array): Added.

2008-09-16  Per Abrahamsen  <abraham@dina.kvl.dk>

	* tertiary_biopores.C (TertiaryBiopores::initialize): User
	groundwater table for default state of active cells.

	* sample/test-colloids.dai: New setup.
	* sample/Makefile (SETUPS): Added.
	* lib/log.dai ("Colloids"): New log model.
	("Colloids balance", "Colloids pool balance"): New summaries.
	* lib/chemistry.dai (colloid, colloid-filtered): New chemicals.
	(colloids, none): New chemistries.

2008-09-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* lib/log.dai ("Surface Chemicals"): Added 'surface_transform'.
	* lib/log-std.dai ("Field nitrogen"): Ditto.

2008-09-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* colloids.h, colloids.C: Removed
	* colloids_MACRO.C: Renamed to 'recation_MACRO.C'
	* Makefile: Updated.

	* chemical.h (add_to_source_primary, add_to_source_secondary)
	(add_to_sink_primary, add_to_sink_secondary): Removed them.
	* chemical.h, chemical_std.C (add_to_transform_sink_secondary)
	(add_to_transform_source_secondary): New virtual members.
	* chemica.h: 
	* reaction_filter.C (tick): Update caller.


2008-09-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* biopore_matrix.C (BioporeMatrix::capacity): Bug fix.

2008-09-10  Birgitte Gjettermann  <bgj@kvl.dk>

	* resistance.h, resistance.C: Added functions

2008-09-04  Per Abrahamsen  <abraham@dina.kvl.dk>

	* biopore_matrix.C, biopore_drain.C, biopore.h, tertiary_biopores.C:
	Move convergence parameters to biopore_matrix.C from
	tertiary_biopores.C.  

	* Version 4.47 released.

2008-09-04  Per Abrahamsen  <abraham@dina.kvl.dk>

	* movement_solute.C (MovementSolute::divide_top_incomming): Don't
	scale with area / total_area, as fluxes are already per area.

2008-09-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.46 released.

2008-09-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* movement_rect.C (MovementRect::tick): Don't use q_tertiary here.

	* root_system.C (RootSystem::solute_uptake): Did not take surface
	area into account.

	* uzrect_2x1.C (UZRect2x1::water_column): Calculate in groundwater.

2008-08-29  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.45 released.

2008-08-29  Per Abrahamsen  <abraham@dina.kvl.dk>

	* OpenMI/Makefile (OPENMIDLL): New macro.
	(OPENMIASS): Changed to libdeps.
	(setup): cp $(OPENMIDLL) to setup/bin.
	(daisy_OpenMI.dll): Update for OpenMI 1.4.

	* weather.h, weather.C (Weather::dry_deposit_unit): Made it a function.
	* weather_base.C, weather_old.C, weather_std.C: update users.

2008-08-28  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.44 released.

2008-08-27  Per Abrahamsen  <abraham@dina.kvl.dk>

	* biopore_matrix.C: Scale down sink terms to keep h_bottom within
	limit, instead of relying on converge to fail. 
	* tertiary_biopores.C (pressure_barrier): New parameter.
	* biopore.h, biopore_matrix.C, biopore_drain.C: Use it.
	
	* oldunits.C, oldunits.h: Renamed from units.C, units.h.
	* units.h, units.C, convert.h, convert.C: Split from unit.h, unit.C.
	* Makefile (OTHER): Update.
	* metalib.h, metalib.C: Move functionality to units.C, units.h.
	* all: Renamed unitc to units.
	
2008-08-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.43 released.

2008-08-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* all: Use 'unit.h' instead of 'units.h'.
	
	* OpenMI/Makefile, txt/Makefile (setup): Added source to setup.

2008-08-25  Per Abrahamsen  <abraham@dina.kvl.dk>

	* tertiary_biopores.C (TertiaryBiopores::tick): Don't assume
	downscaled ddt will give a solution. 

	* Version 4.42 released.

	* all: More works on units.
	
2008-08-22  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.41 released.

2008-08-21  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.40 released.

2008-08-21  Per Abrahamsen  <abraham@dina.kvl.dk>

	* format_LaTeX.C, format_LaTeX.h (FormatLaTeX::quote_id): New function.
	* format_LaTeX.C: (FormatLaTeX::label, FormatLaTeX::pageref)	
	(FormatLaTeX::ref): Use it.
	(FormatLaTeX::see): Call 'ref'.

	* soil_water.C (SoilWater::tick): Disable 'X_ice_buffer'.

	* metalib.C, metalib.h (Metalib::unit): New member.
	* unit.C, unit.h: Lots of work.
	* parser_file.C: Use it.

2008-08-19  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.39 released.

2008-08-12  Birgitte Gjettermann  <bgj@kvl.dk>

	* colloids.h, colloids.C: New components. 
	* colloids_MACRO.C: New model. 

2008-08-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.38 released.

2008-08-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* geometry.h (cell_bottom, cell_top): New pure virtual members.
	* geometry_vert.h: Implement them.
	* biopore_matrix.C (matrix_biopore_matrix): Use them.

2008-08-06  Per Abrahamsen  <abraham@dina.kvl.dk>

	* lib/log-std.dai: Update solute logs to refer to work with
	tertiary biopores.

	* Version 4.37 released.

	* all: Work on tertiary biopores.
	
2008-07-15  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.36 released.

2008-07-15  Per Abrahamsen  <abraham@dina.kvl.dk>

	* production.C, production.h (Production::tick): Accept seed C
	parameter. 
	* crop_std.C (CropStandard::tick): Update caller.

	* canopy_std.C, canopy_std.h (CanopyStd::specific_LAI): New function.
	(InitialCAI): Moved to seed_LAI.C as 'forced_CAI'.
	(SpLAIfac, DSLAI05, InitCAI): Moved away from here.
	* seed_LAI.C: To here.
	* lib/all: Moved parameters in crop definition files.
	
	* crpn.h, crpn.C: Removed obsolete 'SeedN' parameter.
	* lib/pea.dai ("Pea"): Move 'SeedN' to 'NCrop'.
	* lib/potato.dai ("Potato; Koege"): Ditto.
	* lib/rye.dai ("Rye"): Ditto.
	* lib/srape.dai ("Spring Rape"): Ditto.
	* lib/sugarbeet.dai ("Sugar Beet"): Ditto.

2008-07-14  Per Abrahamsen  <abraham@dina.kvl.dk>

	* seed.C, seed.h: New component.
	* Makefile (COMPONENTS): Added it.
	* seed_release.C, seed_LAI.C: New models.
	* Makefile (MODELS): Added them.
	* crop_std.C: Use it.

2008-07-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* soil_water.C, soil_water.h (max_exfiltration_gradient): New
	parameter.

2008-07-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.35 released.

2008-07-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* tertiary_biopores.C (tick): Obey 'max_pond'.  Fix 'dt' bug.

2008-07-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.34 released.

2008-07-07  Per Abrahamsen  <abraham@dina.kvl.dk>

	* surface.C, surface.h (q_top): Take dt argument.
	* uzlr.C (tick): Update caller.
	* uzrichard.C (richard): 
	* uzrect_Mollerup.C (upperboundary): 
	* macro_std.C, movement_rect.C, tertiary_biopores.C (tick): 

	* macro_std.C, movement_rect.C, tertiary_biopores.C (tick):
	Multiply q with dt before calling 'Surface::accept_top'.  

	* surface.C, surface.h (evap_pond, exfiltration): Use dt.
	* bioclimate_std.C (WaterDistribution): Update caller.

2008-07-04  Per Abrahamsen  <abraham@dina.kvl.dk>


	* weather_base.C, weather_base.h: Moved most of Weather here.
	* Makefile (SPECIALS): Added.
	* weather_old.h, weather_old.C, weather_std.C: Update caller.

	* pet_FAO_PM.C (tick): Wet is now different from dry.

2008-07-03  Birgitte Gjettermann  <bgj@kvl.dk>

	* sample/dk-soil.dai ("Jyndevad Ap")
	("Jyndevad C"): Corrected hydraulic data

2008-07-02  Birgitte Gjettermann  <bgj@kvl.dk>

	* stomatacon.h, stomatacon.C: New components. 
	* stomatacon_Leuning.C, stomatacon_BB.C, stomatacon_SHA.C: New models. 
	* photo_Farquhar.C (GSTModel): Use it.

2008-07-02  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.33 released.

2008-07-02  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Makefile (COMPONENTS): Added 'stomatacon.C'.

2008-06-27  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.32 released.

2008-06-23  Per Abrahamsen  <abraham@dina.kvl.dk>

	* anystate.C: New utility.

2008-06-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.31 released.

2008-06-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* root_system.C, root_system.h (MaxWidth): New parameter.

2008-05-30  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.30 released.

2008-05-29  Per Abrahamsen  <abraham@dina.kvl.dk>

	* tertiary_old.C: New model.
	* Makefile (MODELS): Added it.

	* condition_time.C: Fix timestep for "*ly" models.

2008-05-23  Per Abrahamsen  <abraham@dina.kvl.dk>

	* tertiary_instant.C: New model.
	* Makefile (MODELS): Added it.

2008-05-02  Per Abrahamsen  <abraham@dina.kvl.dk>

	* volume_box.h, volume_box.C: Gave it a public interface.
	* Makefile (MODELS, SPECIALS): Moved 'volume_box.C'.

	* geometry.C, geometry.h (Geometry::total_soil): New variant with
	'Volume' argument.

2008-04-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* biopore_drain.C: New model.
	* Makefile (MODELS): Added it.

	* tertiary_biopores.C: New model.
	* Makefile (MODELS): Added it.

	* biopore_matrix.C: Renamed from 'biopore_matrix.C'.
	* Makefile (MODELS): Adjusted.

2008-04-25  Per Abrahamsen  <abraham@dina.kvl.dk>

	* tertiary.C, tertiary.h: New component.
	* Makefile (COMPONENTS): Added it.

	* biopore_std.C: New model.
	* Makefile (MODELS): Added it.

	* imvec.C, imvec.h: New utility.
	* Makefile (OTHER): Added it.

2008-04-22  Per Abrahamsen  <abraham@dina.kvl.dk>

	* transport_Hansen.C (TransportHansen::flow): Bug fix.

	* movement_solute.C, movement_solute.h (divide_top_incomming)
	(divide_top_outgoing, zero_top): New utilities.
	(MovementSolute::solute): Call it.
	* movement_solute.C (MovementSolute::solute): Call them.

2008-04-17  Per Abrahamsen  <abraham@dina.kvl.dk>

	* biopore.C, biopore.h: New component.

	* parser_file.C (add_derived): Specify library name in messages.

	* mobsol.h, mobsol.C: Renamed component to 'secondary'.
	* secondary.h, secondary.C: Renamed component from 'mobsol'.
	* Makefile (COMPONENTS): Ditto.
	* all: Updated callers.
	
2008-04-14  Per Abrahamsen  <abraham@dina.kvl.dk>

	* chemical_std.C: Obey 'Mobsol::alpha'.
	* all: Don't pass 'dt' for solute source terms.

2008-04-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* movement_solute.C, movement_solute.h: New intermeditate model.

2008-04-02  Per Abrahamsen  <abraham@dina.kvl.dk>

	* geometry.C, geometry.h, geometry1d.C, geometry1d.h, geometry_rect.C
	* geometry_rect.h (edge_area, edge_area_per_length): Moved to Geometry.

	* treelog.C (Open::Open): Added new variant for entries in model
	lists.
	* gnuplot_multi.C (GnuplotMulti::initialize): Use it.
	(GnuplotMulti::plot): Ditto.
	* program_batch.C (struct ProgramBatch): Ditto.
	* program_gnuplot.C (ProgramGnuplot::run): Ditto.

	* geometry.h (Geometry::edge_area_per_length): New virtual member.

	* msoltranrect.h, msoltranrect.C, msoltranrect_none.C,
	* msoltranrect_convection.C: Use 'Geometry' instead of 'GeometryRect'.
	* msoltranrect_cd.C: Ditto, and cast to 'GeometryRect' internally.

2008-04-01  Per Abrahamsen  <abraham@dina.kvl.dk>

	* msoltranrect_convection.C (ddt): New log variable.
	(MsoltranrectConvection::flow): Small timesteps.

2008-03-31  Per Abrahamsen  <abraham@dina.kvl.dk>

	* msoltranrect_convection.C (MsoltranrectConvection::flow): 
	* msoltranrect_Mollerup.C (MsoltranrectMollerup::flow): 
	* msoltranrect_none.C (MsoltranrectNone::flow):
	All calculation on solute (C).
	* msoltranrect.C (Msoltranrect::solute, Msoltranrect::element): 
	Update callers.

2008-03-28  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Makefile (REMOVE, MODELS): Removed 'msoltranrect_2x1.C'. 

2008-03-27  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Makefile (OTHER): Added it.

	* frame.C, frame.h: New utility.

2008-03-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.29 released.

2008-03-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* all: Obey 'MaxRootingDepth'.

	* syntax.C, syntax.h (Syntax::order_index): Renamed from 'order'
	to avoid name conflict.
	* program_document.C, traverse.C, printer_file.C: Update callers.

	* lexer_table.C: Fix comment.

2008-03-25  Per Abrahamsen  <abraham@dina.kvl.dk>

	* source_file.C (SourceFile::add_entry): Removed duplicate
	definition of 'total'.

2008-03-23  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.28 released.

2008-03-22  Per Abrahamsen  <abraham@dina.kvl.dk>

	* lib/log-std.dai (chemical): Give default value to 'chemical' for
	the sake of the reference manual.

	* program_document.C (ProgramDocument::own_entries): New
	'new_only' parameter.
	(ProgramDocument::print_model): Use it.

2008-03-17  Per Abrahamsen  <abraham@dina.kvl.dk>

	* library.h (doc_fun): Changed parameter type.
	* log_select.C (LogSelect::document_entries): Update.
	* program_document.C (ProgramDocument::print_model): Update.

	* rootdens_GP1D.C, rootdens_G_P.C (Rootdens::create_uniform): Made
	the later default for 1D.

	* rootdens.C (Rootdens::load_base): Call 'Model::load_model'.

2008-03-16  Per Abrahamsen  <abraham@dina.kvl.dk>

	* model.h, model.C (Model::load_model): New utility.
	* alist.C, alist.h (AttributeList::add_strings): New convenience
	function.
	* format_LaTeX.C (FormatLaTeX::alist_description): Use it.

	* model.h (ModelLogable, ModelAListed): New base classes.
	* all: Use them.

2008-03-13  Mikkel Mollerup  <mmo@life.ku.dk>

	* soil_water.h, soil_water.C, chemical.h, chemical_std.C: Prepare
	for mobile/immobile solute support.
	* column_std.C: Update caller.

2008-03-12  Mikkel Mollerup  <mmo@life.ku.dk>

	* Makefile (COMPONENTS): Added it.
	* mobsol.C, mobsol.h: New component.
	* horizon.h, horizon.C, soil.h, soil.C: Support it.
	
2008-03-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* action_sow.C (plant): New alias.
	(row_width): New parameter.
	* column_std.C, column.h, field.C, field.h (sow): Take row width
	argument. 
	* vegetation.h, vegetation_permanent.C, vegetation_crops.C (sow): Ditto.
	* crop_std.C, crop_simple.C, crop_sold.C, crop_old.C:
	* crop.h, root_system.C, root_system.h (initialize): Ditto.
	* rootdens_GP2D.C, rootdens_GP1D.C, rootdens_AP.C, rootdens_PLF.C:
	* rootdens_PLF, rootdens.h (initalize): New function.

2008-03-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* program_document.C (ProgramDocument::print_model)
	(ProgramDocument::print_model, ProgramDocument::print_fixed): Use
	'Format::alist_description'.

2008-03-07  Per Abrahamsen  <abraham@dina.kvl.dk>

	* format.C, format.h, format_LaTeX.C, format_LaTeX.h
	(format_type): New virtual member function.
	* format_LaTeX.C (FormatLaTeX::formatp, FormatLaTeX::raw): Use it.
	* format.C, format.h (Format::alist_discription): New virtual
	member function.

2008-03-06  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.27 released.

2008-03-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* parser_file.C (Implementation::initialize): New function.
	(ParserFile::load_nested): Call it.
	(Implementation::add_derived, Implementation::load_derived)
	(Implementation::load_list):  Use 'Treelog::Open'.
	* toplevel.C (Toplevel::parse_system_file): Don't use 'Treelog::Open'.

2008-02-27  Per Abrahamsen  <abraham@dina.kvl.dk>

	* condition_time.C (every): New model.
	* harvesting.C (Harvesting::harvest): Renamed from 'operator ()'.
	* crop_std.C: Update caller.
	* submodeler.h (submodel_value): New template.
	* timestep.C (Timestep::null): New function.
	* time.C (Time::null): New function.

2008-02-25  Per Abrahamsen  <abraham@dina.kvl.dk>

	* condition_time.C (mm_dd, before_mm_dd, after_mm_dd): Take
	'minute' and 'second' parameters.
	* vcheck.C, vcheck.h (valid_hour, valid_minute): New static member
	functions.

	* chemical_std.C (surface_decompose): New log variable.
	(surface_decompose_rate, surface_decompose_halftime): New paramaters.
	* lib/log.dai ("Surface Chemicals"): Use it.
	* lib/log-std.dai ("Field chemical"): Use it.

	* chemical_std.C (ChemicalStandard::water_turnover_factor): Moved.
	* abiotic.C, abiotic.h (Abiotic::f_h): To here.
	* organic_std.C (OrganicStandard::water_turnover_factor): Use it.

2008-02-21  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.26 released.

2008-02-21  Per Abrahamsen  <abraham@dina.kvl.dk>

	* condition_crop.C (crop_dm_sorg_over): New condition.
	* field.C, field.h, column_std.C, column.h (crop_sorg_dm): New
	member function. 
	* vegevegetation_crops.C, vegetation_permanent.C:
	vegetation.h: (SOrg_DM_by_name): New virtual member function.
	* crop_simple.C, crop_old.C, crop_sold.C, crop_std.C:
	* crop.h (SOrg_DM): New virtual member function.
	
	* crop_std.C (CropStandard::DM): Take 'sorg_height' into account.
	
	* harvesting.C (Harvesting::operator ()): Only harvest as much
	dead leaves as you harvest live leaves.

	* vegetation.C, vegetation.h (Vegetation::all_crops): New symbol.
	* action_crop.C (Annual::doIt, Perennial::harvest): 
	* action_harvest.C (ActionEmerge::doIt, ActionHarvest::doIt)
	(ActionPluck::doIt, ActionPluckSyntax::ActionPluckSyntax)
	(ActionEmergeSyntax::ActionEmergeSyntax, struct ActionHarvest): 
	* action_markvand.C (ActionMarkvand::doIt): 
	* vegetation_crops.C (VegetationCrops::DM_by_name)
	(VegetationCrops::emerge, VegetationCrops::harvest)
	(VegetationCrops::pluck, VegetationCrops::cleanup_canopy): Use it.

2008-02-20  Per Abrahamsen  <abraham@dina.kvl.dk>

	* assertion.C: Make sure iostream is initialized.

	* action_harvest.C (cut, pluck): New actions.
	* field.C, field.h, column.h, column_std.C:
	* vegetation.h, vegetation_crops.C, vegetation_permanent.C:
	* crops.h, crops.C, crop_std.C (pluck): New member funciton.

	* harvesting.C, harvesting.h (Harvesting::operator ()): Take new
	sorg_harvest argument.
	* crops_std.C (harvest): Update calller.

2008-02-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* dlf.C (DLF::finish): Don't print 'Toplevel' description.

2008-02-15  Per Abrahamsen  <abraham@dina.kvl.dk>

	* groundwater.C, groundwater.h, groundwater_pipe.C
	(set_original_bottom): New function.
	(set_Z_aquitard): Removed.
	* soil.C (Soil::initialize): Update caller.
	(Soil::initialize_aquitard): Return original bottom instead of new
	Z aquitard.

2008-02-14  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.25 released.

2008-02-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* surface.C, surface.h (Surface::update_pond_average): Export it.
	* movement_rect.C (MovementRect::tick): 
	* movement_1D.C (Movement1D::tick_water): 
	* macro_std.C (MacroStandard::tick): Call it.

2008-02-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* production.C (Production::tick): Prevent negative mass.
	* crop_old.C (CropOld::NetProduction): Ditto.

	* Version 4.24 released.

2008-02-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* soil_water.C, soil_water.h (MaxExfiltration): New version that
	takes ekstra 'edge' parameter.
	* surface.C: Allow different q_top for different parts of the surface. 
	* surface.h, surface.C (initialize): New function.
	* column_std.C (ColumnStandard::initialize): Call it.

	* ABAprod_soil.C: Changed root density symbol from 'l' to 'L'.
	
2008-02-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* soil_water.C, soil_water.h (K) Initialize and export.
	* geometry.h, geometry_rect.h (edge_other): Moved to 'geometry.h'.
	* groundwater_extern.C, groundwater_flux.C, groundwater_file.C:
	* groundwater_fixed.C, groundwater_deep.C, groundwater_lysimeter.C:
	* groundwater_pipe.C, groundwater_static.C:
	* groundwater.h (q_bottom): Take edge parameter.
	* groundwater_aquitard.C: New model.
	* Makefile (MODELS): Add it.
	* uzrichard.C (UZRichard::richard): Update caller.
	* uzlr.C (UZlr::tick): Ditto.

2008-02-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.23 released.

2008-02-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* dlf.C, dlf.h (DLF::parameter): New function.
	* log_table.C (parameter_names): New parameter.

2008-02-06  Per Abrahamsen  <abraham@dina.kvl.dk>

	* lib/log-std.dai ("Soil chemical"): Take tillage into account.
	* chemical_std.C (surface_tillage): New parameter.
	* lib/log.dai ("Surface Chemicals"): Log it.
	* chemical_std.C, chemical.h (mix): 
	* chemistry_std.C, chemistry_multi.C, chemistry.h (mix):
	* column_std.C (mix): Support 'penetration' parameter.

2008-02-04  Per Abrahamsen  <abraham@dina.kvl.dk>

	* soil.C (zones): New parameter.

2008-02-01  Per Abrahamsen  <abraham@dina.kvl.dk>

	* uzrect_2x1.C (UZRect2x1::load_syntax): Bug fix: 'UZModel' -> 'UZ1D'. 

	* action_irrigate.C (volume): New parameter for the
	'irrigate_subsoil' model.
	* aom.C, aom.h (AOM::penetrate): 
	* am.C, am.h (AM::mix): 
	* om.C, om.h (OM::mix): 
	* organic_std.C (OrganicStandard::fertilize): 
	* organic_none.C (OrganicNone::fertilize): 
	* organic_matter.h (fertilize): 
	* column_std.C, column.h (ColumnStandard::irrigate_subsoil)
	(ColumnStandard::fertilize): 
	* chemical_std.C (ChemicalStandard::incorporate): 
	* chemical.h (Chemical::incorporate): 
	* chemistry_multi.C (ChemistryMulti::incorporate): 
	* chemistry_std.C (ChemistryStandard::incorporate): 
	* chemistry.C, chemistry.h (Chemistry::incorporate): 
	* soil_water.C, soil_water.h (SoilWater::incorporate): 
	* geometry.C, geometry.h (Geometry::add_soil):
	(Geometry::mix, Geometry::extract_soil): 
	(Geometry::add_surface): Add versions taking 'Volume' argument.

	* volume.C, volume.h (Volume::density): New member function.

2008-01-31  Per Abrahamsen  <abraham@dina.kvl.dk>

	* select_array.C: Handle dry bulk density for [ppm] log.

2008-01-30  Per Abrahamsen  <abraham@dina.kvl.dk>

	* bdconv.C, bdconv.h: Extracted from select_volume.C.
	* Makefile (OTHER): Added.
	* select_volume.C: Use it.

	* msoltranrect_convection.C: Renamed from "msoltranrect_forward.C".
	* Makefile (MODELS): Update.

2008-01-29  Per Abrahamsen  <abraham@dina.kvl.dk>

	* uzlr.C (UZlr::tick): Bug fix.
	* uzrichard.C (debug): New parameter.

2008-01-28  Per Abrahamsen  <abraham@dina.kvl.dk>

	* scope_block.C (ScopeBlock::ScopeBlock): Don't pass block to
	avoid infinite loop when expanding "where" or "type" in block.C.

	* lib/log-std.dai ("Field chemical", "Soil chemical"): New log models.

	* macro_std.C (MacroStandard::check_alist): Bug fix,
	distribution (height_end) should be 1.0, not 0.0.

	* Version 4.22 released.

2008-01-28  Per Abrahamsen  <abraham@dina.kvl.dk>

	* heat_rect.C, heat_rect.h: Removed.
	* Makefile (SUBMODELS): Removed.

2008-01-25  Per Abrahamsen  <abraham@dina.kvl.dk>

	* heatrect.C, heatrect.h: New component.
	* Makefile (COMPONENTS): Add it.
	* heatrect_Mollerup.C: Renamed from 'heat_rect.C' and 'heat_rect.h'.
	* Makefile (MODELS): Add it.
	* heatrect_linear.C, heatrect_none.C: New models.
	* Makefile (MODELS): Add it.
	* movement_rect.C: Update caller.

2008-01-24  Per Abrahamsen  <abraham@dina.kvl.dk>
	
	* assertion.h (daisy_non_negative): Renamed from 'assert_non_negative'.
	* all: Update callers.
	* assertion.h, assertion.C (daisy_approximate, daisy_balance):
	New macros.
	* assertion.C: Implement them.
	
	* mathlib.C, newlib.h (balance): New function.

	* unit.C, unit.h: New component.
	* Makefile (COMPONENTS): Add it.

2008-01-22  Per Abrahamsen  <abraham@dina.kvl.dk>

	* msoltranrect_forward.C: New model.
	* Makefile (MODELS): Add it.

	* aom.C (AOM::full_C, AOM::full_N): Take surface area into account.

2008-01-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* msoltranrect_Mollerup.C: Use 'solver.h'.

2008-01-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Makefile (MODELS, REMOVE): Remove adsorption_none.C and
	adsorption_full.C.
	* adsorption.C: Add code here.

	* adsorption.C, adsorption.h (AdsorptionLinear): New class.
	* adsorption_linear.C (AdsorptionLinearOld): Renamed.

	* chemical.h, chemical_std.C: Restored 'adsorption' parameter.
	* movement_1D.C, movement_rect.C: Use it.

2007-12-17  Per Abrahamsen  <abraham@dina.kvl.dk>

	* root_system.C (nitrogen_uptake): Handle negative PotNUpt request.

2007-12-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* sample/test-aba.dai: New setup.
	* sample/Makefile (SETUPS): Add it.

2007-12-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* number_arit.C (NumberSqr::dimension): Multiply operand dimension
	with itself.
	(NumberOperand::dimension): If dimension is "none", leave it alone.

	* ABAprod_soil.C: Renamed from ABAprod_expr.C
	* ABAprod_uptake.C: Renamed from ABAprod_soil.C
	* Makefile (MODELS, REMOVE): Update.

	* crop_std.C (tick): Enable ABA from roots.
	* vegetation.h, vegetation_crops.C, vegetation_permanent.C:
	* crop.h, crop_old.C, crop_sold.C, crop_simple.C, crop_std.C:
	* root_system.C, root_system.h (check): New function.
	(initialize): Take 'Treelog&' argument.
	* column_std.C (initialize, check): Update caller.

2007-12-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* ABAprod.C, ABAprod.h: New component.
	* ABAprod_root.C, ABAprod_soil.C, ABAprod_expr.C: New model.
	* Makefile (COMPONENTS, MODELS): Add them.
	* root_system.h, root_system.C (ABAExtraction):  New log variable.
	(ABAConc): New state variable.
	(ABAprod): New parameter.

2007-12-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* run_Qt.h (stop): Made it a slot.
	* vis_Qt.h (VisQtMain::stop_program): New signal.
	* vis_Qt.C (VisQtMain::closeEvent): Emit it.
	* ui_Qt_run.C (run_program): Connect them.

2007-12-09  Per Abrahamsen  <abraham@dina.kvl.dk>

	* solver.C: Made it a component.
	* Makefile (COMPONENTS): Added it.
	(OTHER): Remove it.
	* solver_ublas.C, solver_cxsparse.C, solver_none.C: New models.
	(MODELS): Added them.

	* daisy.C (Daisy::run): Call 'msg.flush' when 'force_print'.

2007-12-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* solver.C, solver.h: New utility.
	* Makefile (OTHER): Add it
	* uzrect_Mollerup.C: Use it.

2007-12-07  Per Abrahamsen  <abraham@dina.kvl.dk>

	* ui.h, ui.C, ui_Qt_run.C (failure): New virtual member function.
	* toplevel.C, toplevel.h (failure_interface): New member function.
	* toplevel.C (~Toplevel): Call it.

	* path.C (open_file): Treat file names starting with "\" as
	absolute outside unix.

	* chemical_std.C (incorporate): Unit fix.

	* iterative.h: Ported to GCC 3.3.

	* Makefile: Ported to Linux.

	* action_crop.C, action_fertilize.C, action_table.C: Add unit to
	empty solute for irrigation.

2007-11-30  Per Abrahamsen  <abraham@dina.kvl.dk>

	* heat_rect.C, heat_rect.h: New submodel.

2007-11-29  Per Abrahamsen  <abraham@dina.kvl.dk>

	* soil_heat.h, soil_heat.C: Updated interface.
	* movement_1D.C: Update caller.

	* soil_water.C (SoilWater::freeze): Changed interface.

	* geometry.C, geometry.h (cell_pseudo_number, cell_edges): Moved here.
	* geometry_rect.C, geometry_rect.h (cell_pseudo_number)
	(cell_edges): From here. 

	* geometry.C, geometry.h (build_cell_edges): New function.
	* geometry1d.C, geometry_rect.C: Use it.
	
2007-11-23  Per Abrahamsen  <abraham@dina.kvl.dk>

	* solute.C, solute.h: Merged into chemical.
	* Makefile (SPECIALS): Removed.
	* chemical.h, chemical_std.C: Incorporated solute.
	* all: Updated.

2007-11-22  Per Abrahamsen  <abraham@dina.kvl.dk>

	* vcheck.C (VCheck::unique): Handle objects.

	* vcheck.h, vcheck.C (check): Take 'Metalib' parameter.
	* all: Updated callers.
	* vcheck.h, vcheck.C (InLibrary): New member class.
	* chemical.h (check_library): New function.

	* action_spray.C (doIt): Better message.

	* im.h, im.C: Rewritten.
	* action_table.C, action_crop.C, acrion_extern.C, acrion_irrigate.C:
	* column_std.C, weather.C, weather_old.C, weather_std.C: Update caller.

2007-11-19  Per Abrahamsen  <abraham@dina.kvl.dk>

	* chemistry_multi.C: New model.
	* Makefile (MODELS): Added it.

	* pedo.C, pedo.h, pedo_arit.C, pedo_const.C: Removed component.
	* Makefile (MODELS, COMPONENTS): Ditto.
	* equil.h, equil.C, equil_langmuir.C, equil_linear.C:
	* equil_goal.C: Update callers.
	* transform_equil.C: Update caller.
	
2007-11-15  Per Abrahamsen  <abraham@dina.kvl.dk>

	* reaction_nit.C: New model.
	* Makefile (MODELS): Add it.

2007-11-14  Per Abrahamsen  <abraham@dina.kvl.dk>

	* reaction_std.C, reaction.h (tick): Extra parameters.
	* chemistry_std.C (tick_soil): Update caller.
	* reaction_denit.C: New model.
	* Makefile (MODELS): Add it.

	* abiotic.C, abiotic.h: New utility.
	* Makefile (OTHER): Add it.
	* chemical_std.C, nitrification.C, nitrification_soil.C:
	* nitrification_solute.C, denitrification.C, organic_std.C: Use it.
	
2007-11-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* solute.C (initial): New parameter
	(Solute::default_initialize): Use it.
	* all: Update callers and implementers.

	* number_arit.C (NumberProduct::dimension): Use 'Units::multiply'.

2007-11-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* reaction_adsorption.C: New model.
	* Makefile (MODELS): Added.

2007-11-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* scope_soil.h, scope_soil.C: New utility.
	* Makefile (OTHER): Added.

2007-11-09  Per Abrahamsen  <abraham@dina.kvl.dk>

	* reaction_equil.C: New model.
	* Makefile (MODELS): Added.

2007-11-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* element.h, element.C: New component.
	* Makefile (COMPONENTS): Added.

	* element.h, element.C: Renamed to doe.h and doe.C.
	* Makefile (SUBMODELS): Changed.

2007-11-06  Per Abrahamsen  <abraham@dina.kvl.dk>

	* chemical_std.C (ChemicalStandard::heat_turnover_factor): Fix T_max.
	* denitrification.C (f_T): Ditto.
	* nitrification.C (Nitrification::f_T): Ditto.
	* organic_std.C (OrganicStandard::heat_turnover_factor): Ditto.

2007-11-02  Per Abrahamsen  <abraham@dina.kvl.dk>

	* output.C, output.h (log_time_columns): New paramater.
	* log_table.C: Use it.

	* select_content.C (z, x, y): New parameters.

	* geometry.h (contain_x, contain_y): New virtual member functions.
	* geometry_1D.C, geometry_rect.C: Implement them.
	
	* select_volume.C (min_root_crop): Renamed from 'crop'.

2007-10-31  Per Abrahamsen  <abraham@dina.kvl.dk>

	* rootdens_GP2D.C: New model.

2007-10-30  Per Abrahamsen  <abraham@dina.kvl.dk>

	* gnuplot_base.C: New parameter 'device' to specify output device.

2007-10-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* rootdens_GP1D.C: New model.
	* Makefile (MODELS): Added it.

2007-09-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Made 'Path' a class.

2007-09-07  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.21 released.

2007-09-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* number_plf.C: New model.
	* Makefile (MODELS): Added it.

2007-08-30  Per Abrahamsen  <abraham@dina.kvl.dk>

	* parser_file.C (load_list): Made user specified dimension optional. 

2007-08-29  Birgitte Gjettermann  <bgj@kvl.dk>

	* rubiscoNdist_forced.C: New model. 

2007-08-24  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.20 released.

2007-08-24  Per Abrahamsen  <abraham@dina.kvl.dk>

	* action_extern.C (extern_fertigation): New model.

2007-08-23  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.19 released.

2007-08-23  Per Abrahamsen  <abraham@dina.kvl.dk>

	* select* (output_array): Take vegetation parameter.
	* log.C, log.h (open_geo): Take vegetation paramater.
	* column_std.C (output): Use it.

	* select_volume.C (min_root_density, crop): New parameters.

2007-08-22  Per Abrahamsen  <abraham@dina.kvl.dk>

	* select_volume.C (water_interval, water_volume): New models.

2007-08-20  Per Abrahamsen  <abraham@dina.kvl.dk>

	* action_with.C (done): Done when all actions are done.
	* action_lisp.C (ActionProgn::done): Ditto.

2007-08-20  Birgitte Gjettermann  <bgj@kvl.dk>

	* cdaisy.C, cdaisy.h (daisy_column_get_description): New function.
	
2007-08-15  Per Abrahamsen  <abraham@dina.kvl.dk>

	* cdaisy.C, cdaisy.h (daisy_column_location_size)
	(daisy_column_location_x, daisy_column_location_y): New functions.

2007-08-14  Per Abrahamsen  <abraham@dina.kvl.dk>

	* column.C, column.h (location): New parameter.

2007-07-27  Per Abrahamsen  <abraham@dina.kvl.dk>

	* depth.C (DepthExtern): New model.

2007-07-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.18 released.

2007-07-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Makefile: Upgraded to Qt 4.3.0.

2007-07-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* groundwater_extern.C (initial_table): New parameter.

2007-07-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* action_extern.C: New model.
	* Makefile (MODELS): Add it.

	* all: Made all actions and conditions take "Scope" argument.
	
2007-07-06  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.17 released.

2007-07-06  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Makefile (daisyw.exe): Link GUIOBJECTS directly.

2007-07-05  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.16 released.

	* cropNdist renamed to rubiscoNdist.
	
2007-07-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* fetch.C (width): Fixed problem with small negative numbers.

	* scope_exchange.h: New interface.

	* number_arit.C (NumberPLF): New model.

2007-05-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.15 released.

2007-05-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* root_system.C (MxNO3Up): Changed default value from 2.5e-8 to
	2.5e-7.

2007-05-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.14 released.

2007-05-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* txt/Makefile (tutorial.dvi, tutorial.pdf, exercises.pdf) 
	(exercises.dvi): Added dependencies on other documents.

	* toplevel.C, toplevel.h (parse_system_file): New member function.
	* toplevel.C (parse_file): Use it.
	* ui_Qt_run.C (attach): Ditto.

	* toplevel.C (get_daisy_home): New function.
	(initialize_once): Use it.
	(install_directory): New parameter.

	* setup.nsi: Added start menu links to tutorial and exercises
	documentation, and added a sample setup file to the desktop.

2007-05-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.13 released.

2007-05-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* lib/log-Qt.dai: New log parameterization file.
	* lib/Makefile (TEXT): Added it.

2007-04-16  Per Abrahamsen  <abraham@dina.kvl.dk>

	* run.C, run.h: New base.
	* Makefile (OTHER): Add it.

2007-04-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* ui_Qt.C: New special model.

	* ui.C, ui.h: New component.
	* Makefile (COMPONENTS): Add it.

2007-04-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* treelog_text.h, treelog_text.C: New utility.
	* Makefile (OTHER): Add it.

	* treelog_store.h, treelog_store.C: New utility.
	* Makefile (OTHER): Add it.

	* treelog_stream.h, treelog_stream.C: No longer used.
	* Makefile (OTHER): Removed it.

	* treelog_dual.h, treelog_dual.C: No longer used.
	* Makefile (OTHER): Removed it.

2007-03-30  Per Abrahamsen  <abraham@dina.kvl.dk>

	* intrinsics.C, intrinsics.h: New utility.
	* Makefile (OTHER): Added it.
	* metalib.C, librarian.C: Use it.
	
2007-03-29  Per Abrahamsen  <abraham@dina.kvl.dk>

	* log.C, log.h (metalib, initialize_common): New functions.
	* output.C (initialize): Update caller.

	* syntax.C (add_object): Renamed from 'add'.
	* all: Update callers.
	
	* Version 4.12 released.

	* lib/log.dai: Updated log parameterizations for new chemistry.

2007-03-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* reaction.h, reaction.C, reaction_std.C: Renamed from chemistry.
	* chemistry.h, chemistry.C, chemistry_std.C: Now models.
	* soil_chemical.h, soil_chemical.C: Merged into chemical.
	* soil_chemicals.h, soil_chemicals.C: Merged into chemistry.
	* chemicals.h, chemicals.C: Merged into chemistry.
	* Makefile (COMPONENTS, MODELS): Updated.

2007-03-22  Per Abrahamsen  <abraham@dina.kvl.dk>

	* metalib.C, metalib.h: New utility..
	* Makefile (OTHER): Added it.

2007-03-20  Per Abrahamsen  <abraham@dina.kvl.dk>

	* model.C, model.h: New file.
	* Makefile (OTHER): Added.
	* all: Use it.

2007-03-19  Per Abrahamsen  <abraham@dina.kvl.dk>

	* boolean_extern.C, number_extern.C: Removed.
	
	* groundwater_extern.C: New model.
	* scopesel.C, scopesel.h: New component.
	* condition_extern.C: Use it.
	* Makefile (COMPONENTS, MODELS): Add them.

	* scope_multi.C: Made it a model.
	* Makefile (OTHER): Removed.
	(SPECIALS): Added.

2007-03-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* scope_exchange.C: New model.
	* Makefile (MODELS): Added it.

	* scope.h, scope.C: Made it a library.
	* scope_id.h, scope_id.C: Made it a model.
	* Makefile (OTHER): Removed.
	(COMPONENTS, SPECIALS): Added.

2007-03-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* msoltranrect_none.C: New model.

	* msoltranrect_Mollerup.C: New model.
	* Makefile (MODELS): Added it.

2007-03-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* log_extern.h, log_extern.C: Export interface.
	* output.C, output.h: Made LogExtern a member.

2007-03-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.11 released.

2007-03-07  Per Abrahamsen  <abraham@dina.kvl.dk>

	* cdaisy.h, cdaisy.C: Support 'Toplevel'.
	* cmain.c: Use it.
	
	* Makefile (OTHER, REMOVE): Removed options.C and options.h.

2007-03-06  Per Abrahamsen  <abraham@dina.kvl.dk>

	* output.C, output.h: New utility submodel.
	* Makefile (OTHER): Add it.

	* toplevel.C, toplevel.h: New submodel.
	* Makefile (SUBMODEL): Add it.
	* main.C (main): Use it.

2007-03-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* scope.C (identifier, has_identifier): New virtual members.
	* scope_block.C, scope_block.h: Define them.
	* block.C, log_extern.C: Use them.

	* scope_block.C, scope_block.h: New utility.
	* Makefile (OTHER): Add it.
	* block.C, log_extern.C: Use it.
	
2007-03-01  Per Abrahamsen  <abraham@dina.kvl.dk>
	
	* scope_id.C, scope_id.h: New utility.
	* Makefile (OTHER): Add it.
	* xysource_loop.C, select.C: Use it.

	* scope.h (all_numbers): New abstract member.
	* scope.C (ScopeNull): Implement it.
	* block.C (ScopeBlock): Implement it.
	* number_lisp.C (NumberLet): Implement it.
	* select.C (ScopeX): Implement it.
	* log_extern.C (LogExtern): Implement it.

	* select.h (type): New virtual member function.

	* cdaisy.C, cdaisy.h (daisy_scope_extern_size)
	(daisy_scope_extern_get): New functions.
	(daisy_scope_find_extern): Removed.
	* log_extern.C (extern_scope_size, extern_scope_get): New functions.
	(find_extern_scope): Removed.

2007-02-27  Mikkel Mollerup  <mmo@life.ku.dk>

	* groundwater_flux.C: New model.

2007-02-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* surface.C: Replaced 'lake' with 'forced_pressure'.

2007-02-15  Per Abrahamsen  <abraham@dina.kvl.dk>

	* geometry.h (cell_volume): Renamed from 'volume'.

2007-02-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* time.C (output): Log 'minute' and 'second'.

2007-02-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* geometry_rect.h (corner_size, corner_rows, corner_columns): 
	(corner_index, corner_z, corner_x):
	(cell_corners, edge_corners): New and data members.
	* geometry_rect.C (GeometryRect::GeometryRect): Initialized.

2007-02-09  Per Abrahamsen  <abraham@dina.kvl.dk>

	* geometry.h (edge_center_z, edge_center_x, edge_center_y): New
	member functions.
	* geometry1d.h (edge_center_z): Implement.
	* geometry_rect.h, geometry_rect.C (edge_center_x, edge_center_y):
	Implement. 

2007-01-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* main.C: Not using namespace std.

2007-01-17  Per Abrahamsen  <abraham@dina.kvl.dk>

	* root_system.C, root_system.h (tick_daily): New parameters.
	* phenology_std.C, phenology_TSum.C, phenology.h (tick_daily): Ditto.
	* crop_std.C (tick): Update caller.
	* production.C, production.h (root_growth, leaf_growth)
	(tick_daily): New functions.
	* crop_std.C (tick): Use them.

2007-01-15  Per Abrahamsen  <abraham@dina.kvl.dk>

	* crpn.C (content): Fix partisioning under stress.

2006-12-21  Per Abrahamsen  <abraham@dina.kvl.dk>

	* harvesting.C (tick): Use 'Timestep' to simplify calculation.

	* time.h, time.C: Support minutes and seconds.
	* log_table.C (common_done): Use it.

2006-12-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* timestep.C: New submodel.
	* Makefile (SUBMODELS): Added it.

2006-12-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* log.h (output_lazy): New macro.
	* column_std.C (output): Use it.
	* bioincorporation.C (output): Ditto.

	* assertion.C (notreached): New assertion.
	* All: Use it.

	* All: Removed timestep.h.

2006-12-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* alist.C: Better panic messages.

	* mathlib.h (pow, sqrt, log, acos, asin): Removed "safe" versions.

2006-12-06  Per Abrahamsen  <abraham@dina.kvl.dk>

	* msoltranrect.h, msoltranrect.C: New component.
	* Makefile (COMPONENTS): Added it.
	* msoltranrect_2x1.C: New model.
	* Makefile (MODELS): Added it.

2006-12-05  Birgitte Gjettermann  <bgj@kvl.dk>

	* photo_FCC4.C (class PhotoFCC4): New model.
	* Makefile (MODELS): Added it.

2006-11-27  Per Abrahamsen  <abraham@dina.kvl.dk>

	* uzrect_Mollerup.C: New model.
	* Makefile (MODELS): Added it.

	* uzrect.C: New component.
	* Makefile (COMPONENTS): Added it.
	* uzrect_2x1.C: New model.
	* Makefile (MODELS): Use it.
	* movement_rect.C: Use it.

2006-11-23  Per Abrahamsen  <abraham@dina.kvl.dk>

	* librarian.h (BuildBase): New helper class.
	* librarian.C: New file.
	* Makefile (OTHER): Add it.
	(HEADONLY): Remove it.

2006-11-23  Per Abrahamsen  <abraham@dina.kvl.dk>

	* groundwater_pipe.C (check): 'pressure_table' may not be
	initialized.

2006-11-20  Birgitte Gjettermann  <bgj@kvl.dk>

	* ABAeffect_exp.C (default_model): New model.
	* Makefile (MODELS): 
	
	* ABAeffect.C, ABAeffect.h: New component. 
	* Makefile (COMPONENTS): Added it.
	
	* cropNdist_uniform.C: New model.
	* Makefile (MODELS): Added it.

2006-11-20  Per Abrahamsen  <abraham@dina.kvl.dk>

	* organic_std.C (Initialization): Use 'add_surface'.
	* bioincorporation.C (add): Ditto.

	* weather.h (reletive_humidity): New pure virtual.
	* weather_old.C, weather_std.C: Implement it.
	* weather.h (has_relative_humidity): New virtual function.
	* weather.C, weather_std.C: Implement it.
	
2006-11-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* log, select: Rewrote so they use a 'Volume' object to limit
	logging rather than a top and a bottom height.


2006-11-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* bound.C: New component.

2006-11-09  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.10 released.

2006-11-09  Birgitte Gjettermann  <bgj@kvl.dk>

	* photo_GL.C, photo.h (assimilate): New members in function call.

	* crop_std.C, crop_sold.C, crop_old.C, crop_simple.C, crop.h (tick): 
	Modified to include different types of radiation. 

	* bioclimate_std.C (struct BioclimateStandard)
	(total_PAR_, sun_PAR_, sun_LAI_fraction_): New members.

	* bioclimate_std.C (raddist, difrad): New data members.  
	(sun_PAR, sun_LAI_fraction): New member functions.
	(load_syntax): Added "raddist" and "difrad".

	* bioclimate.h (sun_PAR, sun_LAI_fraction): New virtual member 
	functions.

2006-11-08  Per Abrahamsen  <abraham@dina.kvl.dk>

	* units.C (multiply): Multiple with [cm^3] added.

	* volume_box.C: New model.
	* Makefile (MODELS): Use it.

2006-11-07  Per Abrahamsen  <abraham@dina.kvl.dk>

	* volume.C, volume.h: New component.
	* Makefile (COMPONENTS): Added it.

	* select_volume.C: New model.
	* Makefile (MODELS): Added it.

2006-11-01  Per Abrahamsen  <abraham@dina.kvl.dk>

	* uz1d_none.C: New model.
	* Makefile (MODELS): Added it.

2006-10-31  Per Abrahamsen  <abraham@dina.kvl.dk>

	* condition_walltime.C: New model.
	* Makefile (MODELS): Added it.

	* bioclimate_std.C (load_syntax): Fix type of 'difrad'.

2006-10-17  Per Abrahamsen  <abraham@dina.kvl.dk>

	* uz1d_richard.C: New model.
	* Makefile (MODELS): Added it.

	* uz1d.C, uz1d.h: New component.
	* Makefile (COMPONENTS): Added it.

2006-10-13  Birgitte Gjettermann  <bgj@kvl.dk>
	
	* cropNdist_DPF.C (struct cropNdistDPF): New model.
	* Makefile (MODELS): Added it.

2006-10-12  Birgitte Gjettermann  <bgj@kvl.dk>

	* cropNdist.C, cropNdist.h: New component  
	* Makefile (COMPONENTS): Added it.

2006-10-03  Birgitte Gjettermann  <bgj@kvl.dk>

	* raddist_DPF.C: New model.
	* Makefile (MODELS): Added it. 

2006-10-02  Birgitte Gjettermann  <bgj@kvl.dk>

	* raddist_std.C:New model. 
	* Makefile (MODELS): Added it.

	* raddist.C, raddist.h: New component.
	* Makefile (COMPONENTS):Added it.

2006-10-02  Per Abrahamsen  <abraham@dina.kvl.dk>

	* parser_file.C (Parskip): New helper class.
	(add_derived, load_list): Use it.

2006-09-28  Birgitte Gjettermann  <bgj@kvl.dk>

	* difrad_DPF.C: New model.
	* Makefile (MODELS): Added it.

2006-09-27  Birgitte Gjettermann  <bgj@kvl.dk>

	* weather.C, weather.h (sin_solar_elevation_angle): New function.
	(HourlyExtraterrestrialRadiation): Use it.

	* difrad_weather.C: New model.
	* Makefile (MODELS): Added it.

	* difrad.C, difrad.h: New component.
	* Makefile (COMPONENTS): Added it.

2006-09-22  Per Abrahamsen  <abraham@dina.kvl.dk>

	* log_extern.C (numbers): Made it logable.
	* log.h, log.C, daisy.C: Made logs logable.
	
2006-09-21  Per Abrahamsen  <abraham@dina.kvl.dk>

	* printer_file.C (print_alist): Don't treat alist sequences
	specially. 

	* parser_file.C (load_list): Don't skip parenteses twice at start
	of alist sequence.

2006-09-16  Per Abrahamsen  <abraham@dina.kvl.dk>

	* number_lisp.C: New model.
	* Makefile (MODELS): Added it.

2006-09-15  Per Abrahamsen  <abraham@dina.kvl.dk>

	* all (Condition::match, Action::done): Takes Treelog arguments.

	* condition_extern.C: New model.
	* condition_boolean.C: New model.
	* boolean_extern.C: New model.
	* Makefile (MODELS): Added them.

2006-09-14  Per Abrahamsen  <abraham@dina.kvl.dk>

	* boolean_number.C: New models.
	* boolean_string.C: Split from 'boolean.C'.
	* Makefile (MODELS): Added them.

	* number_extern.C: New model.
	* Makefile (MODELS): Added.
	* scope_multi.C: New utility.
	* Makefile (OTHER): Added.

2006-09-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* all: Made a lot of dimensions symbols instead of std::strings.

2006-09-04  Per Abrahamsen  <abraham@dina.kvl.dk>

	* units.C (standard_conversions): New SoilHeat convertions.

2006-09-01  Per Abrahamsen  <abraham@dina.kvl.dk>

	* all:  Moved soil heat back to column.

	* weather.C (T_normal): Include hour.

2006-08-30  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.09 released.

2006-08-29  Per Abrahamsen  <abraham@dina.kvl.dk>

	* select_flux.C (output_array): Add warning if there are no edges.

	* geometry.C (edge_cross_z): Include top of the centers, so you
	won't get excluded if you choose the center of a node.

2006-08-28  Per Abrahamsen  <abraham@dina.kvl.dk>

	* soil_water.C (load_syntax): Changed dimension of sinks to match
	'log.dai'. 

	* soil_water.C (K): New log variable.
	* soil_water.h, soil_water.C (tick_after): New member function.
	* column_std.C (initialize): Call it.
	* lib/log.dai ("Soil Water Conductivity (log10)"): Use it.

	* select_utils.h, select_utils.C: New utility.
	* Makefile (OTHER): Added it.
	* select_interval.C: Use it.

2006-08-22  Per Abrahamsen  <abraham@dina.kvl.dk>

	* lib/potato.dai ("Potato; FertOrgaNic"): New base parameterization.
	("Potato; Agria", "Potato; Folva", "Potato; Triada"): New
	parameterizations.
	(Potato): Changed default to Folva.

2006-08-21  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Makefile (MODELS): Removed 'select_date.C'.
	* select.C, select.h (output_time): Removed.
	* log.h(output): Removed "const Time&" argument.
	* log_select.h, log_select.h (output): Ditto.
	* log_harvest.C (output): Ditto.
	* log_all.C, log_all.h (output): Ditto.
	* log_alist.C, log_alist.h (output): Ditto.

2006-07-31  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.08 released.

2006-07-27  Per Abrahamsen  <abraham@dina.kvl.dk>

	* parser_file.C (add_derived): Shorthand for defining 'const'
	numbers and integers. 
	(load_derived): Shorthand for specifying 'const' numbers and
	integers. 

2006-07-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* parser_file.C (get_time): Removed unused function.

2006-07-17  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.07 released.

2006-07-17  Per Abrahamsen  <abraham@dina.kvl.dk>

	* action_table.C: New "Emerging" column.
	* action_harvest.C: Added "emerge" action.
	* field.h, field.C (emerge): New operation.
	* column.h, column_std.C (emerge): Ditto.
	* vegetation.h, vegetation_permanent.C
	* vegetation_crops.C (emerge): Ditto.
	* crop_sold.C, crop_old.C, crop_std.C, crop_simple.C:
	* crop.h (emerge): Ditto.

2006-07-15  Per Abrahamsen  <abraham@dina.kvl.dk>

	* parser_file.C, parser_file.h, parser.h (check): New virtual
	member function.
	(load_list): Use it.

2006-07-05  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.06 released.

2006-07-05  Per Abrahamsen  <abraham@dina.kvl.dk>

	* sample/log-sample.dai ("Sample water content"): Fixed spec.

	* parser_file.C (load_list): Handle fixed size object sequences.
	(load_list): Handle sequence valued variables.

2006-07-04  Per Abrahamsen  <abraham@dina.kvl.dk>

	* parser_file.C (load_derived): Handle '$' variables.

2006-07-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* lib/log.dai, lib/log-std.dai: Cleaned up specs.

	* Version 4.05 released.

2006-07-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* geometry.C (initialize_layer): Don't assume array is large
	enough to hold all cells.

2006-06-28  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.04 released.

2006-06-28  Per Abrahamsen  <abraham@dina.kvl.dk>

	* source_file.C, source_file.h (default_hour): New parameter.

2006-06-27  Per Abrahamsen  <abraham@dina.kvl.dk>

	* select.C (check_path): Complain if fixed components are found in
	the spec.

	* lib/log-std.dai ("Field nitrogen"): Simplify 'spec' entries.

	* Version 4.03 released.

2006-06-27  Per Abrahamsen  <abraham@dina.kvl.dk>

	* source_std.C (load): Bug fix.  Stored values in wrong time steps.

2006-05-22  Per Abrahamsen  <abraham@dina.kvl.dk>

	* geometry_vert.h, geometry_vert.C: New interface.
	* Makefile (SPECIALS): Add it.
	* geometry_rect.h, geometry_rect.C:
	* geometry1d.h, geometry1d.C: Derive from it.
	* uzmodel.h, uzlr.C, uznone.C, uzrichard.C: Use it.
	
2006-05-17  Per Abrahamsen  <abraham@dina.kvl.dk>

	* bioclimate_std.C (WaterDistribution): Handle pond/snow
	interaction directly.

2006-05-16  Per Abrahamsen  <abraham@dina.kvl.dk>

	* soil_heat_rect.C, soil_heat_rect.h: New submodel.
	* soil_water_rect.C, soil_water_rect.h: New submodel.
	* Makefile (SUBMODELS): Add them.

2006-05-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* soil_water.h: Removed unnecessary pure virtuals.
	* soil_heat1d.C, grounwater_pipe.C: Take 'SoilWater1D' arguments.
	
	* chemical_std.C, chemical.h (active_grounwater): Removed flag.
	* soil_chemical.C: Update caller.

	* soil_water1d.h, soil_water1d.C: Don't hide implementation in
	'Implementation' struct.

	* column_std.C, column.h: Removed functions for communication with
	external model.
	* geometry.h, geometry1d.C (cell_at): New function.
	* soil.h (horizon): New function.
	* column_std.C, column.h (horizon_at): New function.
	* number_soil.C: Rewrote to use new function.

2006-05-09  Per Abrahamsen  <abraham@dina.kvl.dk>

	* movement_rect.C: New model.
	* Makefile (MODELS): Added it.

	* movement.h, movement_1D.C: Rewrote.
	* column_std.C: Now define both 'default' and 'generic' columns,
	where the later takes a 'Movement' parameter instead of
	'SoilHeat', 'SoilWater' and 'Groundwater'.

2006-05-03  Per Abrahamsen  <abraham@dina.kvl.dk>

	* column_rect.C, column_inorganic.C, column_r2d2.C:
	* column_base.C, column_base.h: Removed files. 
	* Makefile: Update.

	* column_std.C: Included base.

	* organic_none.C: New model.

	* organic_matter.C: Made it a component.
	* Makefile (COMPONENTS): Added it.
	* organic_std.C: Moved model here.
	* Makefile (MODELS): Added it.

2006-04-26  Per Abrahamsen  <abraham@dina.kvl.dk>

	* geometry_rect.C, geometry_rect.h: New submodel.
	* Makefile (SUBMODELS): Add it.
	* column_rect.C: New model.
	* Makefile (MODELS): Add it.

2006-04-25  Per Abrahamsen  <abraham@dina.kvl.dk>

	* soil_heat.h, soil_heat1d.C (T_surface_snow): New virtual member
	function. 
	* snow.C (tick): Use it.

	* bioclimate_std.C (WaterDistribution): Removed "node 0 is top"
	assumption. 
	* column_std.C (tick): Ditto.
	* soil_chemicals.C (mixture): Ditto.
	* surface.C (albedo): Ditto.

	* select_content.C (output_array): Removed 1D assumptions.
	* select_interval.C: Ditto.

2006-04-24  Per Abrahamsen  <abraham@dina.kvl.dk>

	* adadsorption.h, adsadsorption.C, adsorption_full.C (full): New
	virtual member function with default implementation.

	* bioincorporation.C: Removed 1D assumption.

	* lib/chemistry.dai (solid): Removed transport.

	* organic_matter.C (mix): Reset tillage age based on z, not zplus.
	(top_summary, initialize): Removed 1D assumptions.

	* organic_matter.C (active): New function.
	(active_size): Removed.
	* column_std.C (tick): Update caller.
	* denitrification.C (tick) Change argument.
	(initialize): New function.
	* column_std.C (initialize): Update caller.
	* om.C (initialize): New function.
	(grow): Removed.
	* all: Updated callers.

2006-04-23  Per Abrahamsen  <abraham@dina.kvl.dk>

	* soil.C, soil.h (MaxRootingHeight): Renamed from 'MaxRootingDepth'

2006-04-22  Per Abrahamsen  <abraham@dina.kvl.dk>

	* element.h, element.C: Extracted from 'dom.C'.
	* Makefile (SUBMODELS): Added.

2006-04-21  Per Abrahamsen  <abraham@dina.kvl.dk>

	* soltrans1d.C, soltrans1d.h: New submodel.
	* Makefile (SUBMODELS): Added it.
	* column_base.C: Use it.
	* column_base.C, column_base.h (tick_base_soil_chemicals): New
	function. 
	* column_std.C, column_inorganic.C: Update derived.
	* solute.C: Remove transport.

	* all: Changed 'Geometry::size' to 'Geometry::node_size'.

	* select_flux.h, select_flux.C: New interface.
	* Makefile (SPECIALS): Add it.
	* select_flux_top.C, select_flux_bottom.C: Use it.
	
2006-04-20  Per Abrahamsen  <abraham@dina.kvl.dk>

	* geometry1d.h, geometry1d.C, geometry.h (fraction_in_z_interval)
	(edge_cross_z): New virtual member functions.

	* soil_water.h, soil_water.C: Made most stuff virtual.
	* soil_water1d.h, soil_water1d.C: New special.
	* Makefile (SUBMODELS): Added it.
	* column_base.h, column_base.C: Use it.
	* groundwater.h, uzmodel.h, macro.h: Use it.

2006-04-19  Per Abrahamsen  <abraham@dina.kvl.dk>

	* geometry.h, geometry1d.h, geometry1d.C: Use size_t instead of
	unsigned int. 
	* soil.h, soil.C, soil_water.h, soil_water.C: Ditto.

2006-04-18  Per Abrahamsen  <abraham@dina.kvl.dk>

	* rootdens_AP.C, rootdens_G_P.C (set_density): 
	* crop_std.C, crop_simple.C (tick): Generic geometry.
	* crop_old.C, crop_sold.C (Emergence, RootPenetration)
	(NetProduction): Ditto 

	* rootdens_AP.C (set_density): Fix bug where tip density just
	grew. 

2006-04-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* geometry1d.C (check_border): New function.

2006-04-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* soil_heat1d.C (soil_heat_submodel): Fix name of submodel.

2006-04-11  Per Abrahamsen  <abraham@dina.kvl.dk>

	* crop_old.C: Ditto.

	* geometry.h, geometry.C: Made it an almost pure base.
	* geometry1d.h, geometry1d.C: New submodel.
	* Makefile (SUBMODELS): Added it.
	* column_base.C, column_base.h: Use it.
	* ridge.C: Only works with Geometry1D.
	* root_system.C (potential_water_uptake): Avoid using Geometry::dz.
	
	* crop_std.C (tick): First parameter of 'Phenology::emergence' is
	pressure, not depth.

2006-04-07  Per Abrahamsen  <abraham@dina.kvl.dk>

	* column_r2d2.C: New model.
	* Makefile (MODELS): Added it.

	* All: Split Soil and Geometry abstractions.
	
2006-04-05  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.02 released.

	* Bug fixes.

2006-04-04  Per Abrahamsen  <abraham@dina.kvl.dk>

	* partition.C (load_syntax): Typo.

	* bioincorporation.C (tick): Change assertion to warning.

2006-04-04  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.01 released.

2006-03-28  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Makefile (SUBMODELS): Added it.

	* soil_heat1d.C: New submodel.

2006-03-14  Per Abrahamsen  <abraham@dina.kvl.dk>

	* soil_heat.C, soil_heat.h (capacity, capacity_apparent): New
	public members. 
	* soil_heat.C (capacity, C_apparent): Removed log variables.
	(solve, calculate_freezing_rate): Update callers.

2006-03-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* movement.h, movement.C: New component.
	* Makefile (COMPONENTS): Added it. 
	* movement_1D.C: New model.
	* Makefile (MODELS): Added it.

2006-02-21  Per Abrahamsen  <abraham@dina.kvl.dk>

	* sample/heat-properties.dai: New file.
	* sample/Makefile (SETUPS): Added.

	* parser_file.C (get_string): Support '\t' escape.

	* number_soil.C (soil_heat_capacity, soil_heat_conductivity): New
	models.

2006-02-09  Per Abrahamsen  <abraham@dina.kvl.dk>

	* weather_std.C (TempScale, TempOffset): New parameters.

2006-02-01  Per Abrahamsen  <abraham@dina.kvl.dk>

	* Version 4.00 released.

2006-01-31  Per Abrahamsen  <abraham@dina.kvl.dk>

	* source_expr.C (load): Fix logic error.

2006-01-25  Per Abrahamsen  <abraham@dina.kvl.dk>

	* boolean.C (BooleanOrSyntax): Typo.

2006-01-17  Per Abrahamsen  <abraham@dina.kvl.dk>

	* source_file.C, source_file.h (handle): New parameter.

2006-01-16  Per Abrahamsen  <abraham@dina.kvl.dk>

	* treelog.C (warning, error): Suffix message.

2006-01-12  Per Abrahamsen  <abraham@dina.kvl.dk>

	* treelog.C (error, warning): Prefix message.

2006-01-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* integer.C, integer.h: New component.
	* Makefile (COMPONENTS): Add it.
	* integer_arit.C: New model.
	* Makefile (MODELS): Add it.

2006-01-02  Per Abrahamsen  <abraham@dina.kvl.dk>

	* select_content.C: Use linear interpolation between node points.

2005-12-13  Per Abrahamsen  <abraham@dina.kvl.dk>

	* crop_std.C (tick): Check that CAI is larger than 0 before
	calculating assimilate production by photosynthesis.  Needed to
	make the code survive a cut that leaves no CAI.

2005-12-10  Per Abrahamsen  <abraham@dina.kvl.dk>

	* number_source.C (source_average): New model.