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| \n", + " | t_LM | \n", + "t_NL | \n", + "t_QW | \n", + "t_NREM | \n", + "t_REM | \n", + "distance_in_nest | \n", + "distance_out_of_nest | \n", + "time_in_nest | \n", + "time_out_of_nest | \n", + "
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| \n", + " | location | \n", + "excitation_wavelength_in_nm | \n", + "emission_wavelength_in_nm | \n", + "indicator | \n", + "optical_fiber | \n", + "excitation_source | \n", + "photodetector | \n", + "dichroic_mirror | \n", + "emission_filter | \n", + "excitation_filter | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|
| id | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 0 | \n", + "Ventral Tegmental Area (VTA) | \n", + "465.0 | \n", + "-1.0 | \n", + "vta_indicator abc.Indicator at 0x5005394320\\nFields:\\n description: <description of the indicator for VTA>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: vta_virus_injection abc.ViralVectorInjection at 0x5005394000\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for VTA>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: vta_virus abc.ViralVector at 0x4996644560\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for VTA>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber1 abc.OpticalFiber at 0x4998151344\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x4998151008\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_1 abc.OpticalFiberModel at 0x4998150672\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 1>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF001\\n | \n", + "excitation_source_calcium_signal abc.ExcitationSource at 0x4998150336\\nFields:\\n description: <description of the excitation source for the calcium signal (465nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_calcium abc.ExcitationSourceModel at 0x4998150000\\nFields:\\n description: <description of the excitation source model for calcium signal>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [460. 470.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| 1 | \n", + "Ventral Tegmental Area (VTA) | \n", + "405.0 | \n", + "-1.0 | \n", + "vta_indicator abc.Indicator at 0x5005394320\\nFields:\\n description: <description of the indicator for VTA>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: vta_virus_injection abc.ViralVectorInjection at 0x5005394000\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for VTA>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: vta_virus abc.ViralVector at 0x4996644560\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for VTA>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber1 abc.OpticalFiber at 0x4998151344\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x4998151008\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_1 abc.OpticalFiberModel at 0x4998150672\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 1>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF001\\n | \n", + "excitation_source_isosbestic_control abc.ExcitationSource at 0x5005398800\\nFields:\\n description: <description of the excitation source for the isosbestic control (405nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_isosbestic abc.ExcitationSourceModel at 0x5005398480\\nFields:\\n description: <description of the excitation source model for isosbestic control>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [400. 410.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| 2 | \n", + "Prefrontal Cortex (PFC) | \n", + "465.0 | \n", + "-1.0 | \n", + "pfc_indicator abc.Indicator at 0x4998144288\\nFields:\\n description: <description of the indicator for PFC>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: pfc_virus_injection abc.ViralVectorInjection at 0x4998143280\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for PFC>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: pfc_virus abc.ViralVector at 0x4998143616\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for PFC>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber2 abc.OpticalFiber at 0x5005399760\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x5005399440\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_2 abc.OpticalFiberModel at 0x5005399120\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 2>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF002\\n | \n", + "excitation_source_calcium_signal abc.ExcitationSource at 0x4998150336\\nFields:\\n description: <description of the excitation source for the calcium signal (465nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_calcium abc.ExcitationSourceModel at 0x4998150000\\nFields:\\n description: <description of the excitation source model for calcium signal>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [460. 470.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| 3 | \n", + "Prefrontal Cortex (PFC) | \n", + "405.0 | \n", + "-1.0 | \n", + "pfc_indicator abc.Indicator at 0x4998144288\\nFields:\\n description: <description of the indicator for PFC>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: pfc_virus_injection abc.ViralVectorInjection at 0x4998143280\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for PFC>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: pfc_virus abc.ViralVector at 0x4998143616\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for PFC>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber2 abc.OpticalFiber at 0x5005399760\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x5005399440\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_2 abc.OpticalFiberModel at 0x5005399120\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 2>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF002\\n | \n", + "excitation_source_isosbestic_control abc.ExcitationSource at 0x5005398800\\nFields:\\n description: <description of the excitation source for the isosbestic control (405nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_isosbestic abc.ExcitationSourceModel at 0x5005398480\\nFields:\\n description: <description of the excitation source model for isosbestic control>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [400. 410.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| Data type | float32 |
|---|---|
| Shape | (26240256,) |
| Array size | 100.10 MiB |
| Chunk shape | (2500000,) |
| Compression | gzip |
| Compression opts | 4 |
| Compression ratio | 1.282026770744337 |
| \n", + " | location | \n", + "excitation_wavelength_in_nm | \n", + "emission_wavelength_in_nm | \n", + "indicator | \n", + "optical_fiber | \n", + "excitation_source | \n", + "photodetector | \n", + "dichroic_mirror | \n", + "emission_filter | \n", + "excitation_filter | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|
| id | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 0 | \n", + "Ventral Tegmental Area (VTA) | \n", + "465.0 | \n", + "-1.0 | \n", + "vta_indicator abc.Indicator at 0x5005394320\\nFields:\\n description: <description of the indicator for VTA>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: vta_virus_injection abc.ViralVectorInjection at 0x5005394000\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for VTA>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: vta_virus abc.ViralVector at 0x4996644560\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for VTA>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber1 abc.OpticalFiber at 0x4998151344\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x4998151008\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_1 abc.OpticalFiberModel at 0x4998150672\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 1>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF001\\n | \n", + "excitation_source_calcium_signal abc.ExcitationSource at 0x4998150336\\nFields:\\n description: <description of the excitation source for the calcium signal (465nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_calcium abc.ExcitationSourceModel at 0x4998150000\\nFields:\\n description: <description of the excitation source model for calcium signal>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [460. 470.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| 1 | \n", + "Ventral Tegmental Area (VTA) | \n", + "405.0 | \n", + "-1.0 | \n", + "vta_indicator abc.Indicator at 0x5005394320\\nFields:\\n description: <description of the indicator for VTA>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: vta_virus_injection abc.ViralVectorInjection at 0x5005394000\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for VTA>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: vta_virus abc.ViralVector at 0x4996644560\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for VTA>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber1 abc.OpticalFiber at 0x4998151344\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x4998151008\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_1 abc.OpticalFiberModel at 0x4998150672\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 1>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF001\\n | \n", + "excitation_source_isosbestic_control abc.ExcitationSource at 0x5005398800\\nFields:\\n description: <description of the excitation source for the isosbestic control (405nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_isosbestic abc.ExcitationSourceModel at 0x5005398480\\nFields:\\n description: <description of the excitation source model for isosbestic control>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [400. 410.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| 2 | \n", + "Prefrontal Cortex (PFC) | \n", + "465.0 | \n", + "-1.0 | \n", + "pfc_indicator abc.Indicator at 0x4998144288\\nFields:\\n description: <description of the indicator for PFC>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: pfc_virus_injection abc.ViralVectorInjection at 0x4998143280\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for PFC>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: pfc_virus abc.ViralVector at 0x4998143616\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for PFC>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber2 abc.OpticalFiber at 0x5005399760\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x5005399440\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_2 abc.OpticalFiberModel at 0x5005399120\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 2>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF002\\n | \n", + "excitation_source_calcium_signal abc.ExcitationSource at 0x4998150336\\nFields:\\n description: <description of the excitation source for the calcium signal (465nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_calcium abc.ExcitationSourceModel at 0x4998150000\\nFields:\\n description: <description of the excitation source model for calcium signal>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [460. 470.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| 3 | \n", + "Prefrontal Cortex (PFC) | \n", + "405.0 | \n", + "-1.0 | \n", + "pfc_indicator abc.Indicator at 0x4998144288\\nFields:\\n description: <description of the indicator for PFC>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: pfc_virus_injection abc.ViralVectorInjection at 0x4998143280\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for PFC>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: pfc_virus abc.ViralVector at 0x4998143616\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for PFC>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber2 abc.OpticalFiber at 0x5005399760\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x5005399440\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_2 abc.OpticalFiberModel at 0x5005399120\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 2>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF002\\n | \n", + "excitation_source_isosbestic_control abc.ExcitationSource at 0x5005398800\\nFields:\\n description: <description of the excitation source for the isosbestic control (405nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_isosbestic abc.ExcitationSourceModel at 0x5005398480\\nFields:\\n description: <description of the excitation source model for isosbestic control>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [400. 410.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| Data type | float32 |
|---|---|
| Shape | (26240256,) |
| Array size | 100.10 MiB |
| Chunk shape | (2500000,) |
| Compression | gzip |
| Compression opts | 4 |
| Compression ratio | 1.3381768505083498 |
| \n", + " | location | \n", + "excitation_wavelength_in_nm | \n", + "emission_wavelength_in_nm | \n", + "indicator | \n", + "optical_fiber | \n", + "excitation_source | \n", + "photodetector | \n", + "dichroic_mirror | \n", + "emission_filter | \n", + "excitation_filter | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|
| id | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 0 | \n", + "Ventral Tegmental Area (VTA) | \n", + "465.0 | \n", + "-1.0 | \n", + "vta_indicator abc.Indicator at 0x5005394320\\nFields:\\n description: <description of the indicator for VTA>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: vta_virus_injection abc.ViralVectorInjection at 0x5005394000\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for VTA>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: vta_virus abc.ViralVector at 0x4996644560\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for VTA>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber1 abc.OpticalFiber at 0x4998151344\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x4998151008\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_1 abc.OpticalFiberModel at 0x4998150672\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 1>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF001\\n | \n", + "excitation_source_calcium_signal abc.ExcitationSource at 0x4998150336\\nFields:\\n description: <description of the excitation source for the calcium signal (465nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_calcium abc.ExcitationSourceModel at 0x4998150000\\nFields:\\n description: <description of the excitation source model for calcium signal>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [460. 470.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| 1 | \n", + "Ventral Tegmental Area (VTA) | \n", + "405.0 | \n", + "-1.0 | \n", + "vta_indicator abc.Indicator at 0x5005394320\\nFields:\\n description: <description of the indicator for VTA>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: vta_virus_injection abc.ViralVectorInjection at 0x5005394000\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for VTA>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: vta_virus abc.ViralVector at 0x4996644560\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for VTA>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber1 abc.OpticalFiber at 0x4998151344\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x4998151008\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_1 abc.OpticalFiberModel at 0x4998150672\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 1>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF001\\n | \n", + "excitation_source_isosbestic_control abc.ExcitationSource at 0x5005398800\\nFields:\\n description: <description of the excitation source for the isosbestic control (405nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_isosbestic abc.ExcitationSourceModel at 0x5005398480\\nFields:\\n description: <description of the excitation source model for isosbestic control>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [400. 410.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| 2 | \n", + "Prefrontal Cortex (PFC) | \n", + "465.0 | \n", + "-1.0 | \n", + "pfc_indicator abc.Indicator at 0x4998144288\\nFields:\\n description: <description of the indicator for PFC>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: pfc_virus_injection abc.ViralVectorInjection at 0x4998143280\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for PFC>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: pfc_virus abc.ViralVector at 0x4998143616\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for PFC>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber2 abc.OpticalFiber at 0x5005399760\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x5005399440\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_2 abc.OpticalFiberModel at 0x5005399120\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 2>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF002\\n | \n", + "excitation_source_calcium_signal abc.ExcitationSource at 0x4998150336\\nFields:\\n description: <description of the excitation source for the calcium signal (465nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_calcium abc.ExcitationSourceModel at 0x4998150000\\nFields:\\n description: <description of the excitation source model for calcium signal>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [460. 470.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| 3 | \n", + "Prefrontal Cortex (PFC) | \n", + "405.0 | \n", + "-1.0 | \n", + "pfc_indicator abc.Indicator at 0x4998144288\\nFields:\\n description: <description of the indicator for PFC>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: pfc_virus_injection abc.ViralVectorInjection at 0x4998143280\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for PFC>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: pfc_virus abc.ViralVector at 0x4998143616\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for PFC>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber2 abc.OpticalFiber at 0x5005399760\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x5005399440\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_2 abc.OpticalFiberModel at 0x5005399120\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 2>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF002\\n | \n", + "excitation_source_isosbestic_control abc.ExcitationSource at 0x5005398800\\nFields:\\n description: <description of the excitation source for the isosbestic control (405nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_isosbestic abc.ExcitationSourceModel at 0x5005398480\\nFields:\\n description: <description of the excitation source model for isosbestic control>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [400. 410.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| Data type | float32 |
|---|---|
| Shape | (26240256,) |
| Array size | 100.10 MiB |
| Chunk shape | (2500000,) |
| Compression | gzip |
| Compression opts | 4 |
| Compression ratio | 1.3235867554797829 |
| \n", + " | location | \n", + "excitation_wavelength_in_nm | \n", + "emission_wavelength_in_nm | \n", + "indicator | \n", + "optical_fiber | \n", + "excitation_source | \n", + "photodetector | \n", + "dichroic_mirror | \n", + "emission_filter | \n", + "excitation_filter | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|
| id | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 0 | \n", + "Ventral Tegmental Area (VTA) | \n", + "465.0 | \n", + "-1.0 | \n", + "vta_indicator abc.Indicator at 0x5005394320\\nFields:\\n description: <description of the indicator for VTA>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: vta_virus_injection abc.ViralVectorInjection at 0x5005394000\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for VTA>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: vta_virus abc.ViralVector at 0x4996644560\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for VTA>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber1 abc.OpticalFiber at 0x4998151344\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x4998151008\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_1 abc.OpticalFiberModel at 0x4998150672\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 1>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF001\\n | \n", + "excitation_source_calcium_signal abc.ExcitationSource at 0x4998150336\\nFields:\\n description: <description of the excitation source for the calcium signal (465nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_calcium abc.ExcitationSourceModel at 0x4998150000\\nFields:\\n description: <description of the excitation source model for calcium signal>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [460. 470.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| 1 | \n", + "Ventral Tegmental Area (VTA) | \n", + "405.0 | \n", + "-1.0 | \n", + "vta_indicator abc.Indicator at 0x5005394320\\nFields:\\n description: <description of the indicator for VTA>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: vta_virus_injection abc.ViralVectorInjection at 0x5005394000\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for VTA>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: vta_virus abc.ViralVector at 0x4996644560\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for VTA>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber1 abc.OpticalFiber at 0x4998151344\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x4998151008\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_1 abc.OpticalFiberModel at 0x4998150672\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 1>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF001\\n | \n", + "excitation_source_isosbestic_control abc.ExcitationSource at 0x5005398800\\nFields:\\n description: <description of the excitation source for the isosbestic control (405nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_isosbestic abc.ExcitationSourceModel at 0x5005398480\\nFields:\\n description: <description of the excitation source model for isosbestic control>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [400. 410.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| 2 | \n", + "Prefrontal Cortex (PFC) | \n", + "465.0 | \n", + "-1.0 | \n", + "pfc_indicator abc.Indicator at 0x4998144288\\nFields:\\n description: <description of the indicator for PFC>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: pfc_virus_injection abc.ViralVectorInjection at 0x4998143280\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for PFC>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: pfc_virus abc.ViralVector at 0x4998143616\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for PFC>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber2 abc.OpticalFiber at 0x5005399760\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x5005399440\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_2 abc.OpticalFiberModel at 0x5005399120\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 2>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF002\\n | \n", + "excitation_source_calcium_signal abc.ExcitationSource at 0x4998150336\\nFields:\\n description: <description of the excitation source for the calcium signal (465nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_calcium abc.ExcitationSourceModel at 0x4998150000\\nFields:\\n description: <description of the excitation source model for calcium signal>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [460. 470.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| 3 | \n", + "Prefrontal Cortex (PFC) | \n", + "405.0 | \n", + "-1.0 | \n", + "pfc_indicator abc.Indicator at 0x4998144288\\nFields:\\n description: <description of the indicator for PFC>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: pfc_virus_injection abc.ViralVectorInjection at 0x4998143280\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for PFC>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: pfc_virus abc.ViralVector at 0x4998143616\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for PFC>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber2 abc.OpticalFiber at 0x5005399760\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x5005399440\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_2 abc.OpticalFiberModel at 0x5005399120\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 2>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF002\\n | \n", + "excitation_source_isosbestic_control abc.ExcitationSource at 0x5005398800\\nFields:\\n description: <description of the excitation source for the isosbestic control (405nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_isosbestic abc.ExcitationSourceModel at 0x5005398480\\nFields:\\n description: <description of the excitation source model for isosbestic control>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [400. 410.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
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| id | \n", + "\n", + " | \n", + " | \n", + " | \n", + " |
| 0 | \n", + "Brain Region Z | \n", + "ElectrodeGroupEEG pynwb.ecephys.ElectrodeGroup at 0x5005722688\\nFields:\\n description: ElectrodeGroup for EEG channels.\\n device: DeviceEEG pynwb.device.Device at 0x5005397200\\nFields:\\n description: EEG electrodes consist of 2 wires with X um diameter made of material Y wrapped around a metal screw inserted into the brain in location Z.\\n manufacturer: Dan Lab\\n\\n location: Brain Region Z\\n | \n", + "ElectrodeGroupEEG | \n", + "EEG1 | \n", + "
| 1 | \n", + "Brain Region Z | \n", + "ElectrodeGroupEEG pynwb.ecephys.ElectrodeGroup at 0x5005722688\\nFields:\\n description: ElectrodeGroup for EEG channels.\\n device: DeviceEEG pynwb.device.Device at 0x5005397200\\nFields:\\n description: EEG electrodes consist of 2 wires with X um diameter made of material Y wrapped around a metal screw inserted into the brain in location Z.\\n manufacturer: Dan Lab\\n\\n location: Brain Region Z\\n | \n", + "ElectrodeGroupEEG | \n", + "EEG2 | \n", + "
| 2 | \n", + "Subcutaneous neck | \n", + "ElectrodeGroupEMG pynwb.ecephys.ElectrodeGroup at 0x5005401680\\nFields:\\n description: ElectrodeGroup for EMG channels.\\n device: DeviceEMG pynwb.device.Device at 0x5005397520\\nFields:\\n description: EMG electrodes consist of 2 wires with X um diameter made of material Y inserted subcutaneously in the neck.\\n manufacturer: Dan Lab\\n\\n location: Subcutaneous neck\\n | \n", + "ElectrodeGroupEMG | \n", + "EMG1 | \n", + "
| 3 | \n", + "Subcutaneous neck | \n", + "ElectrodeGroupEMG pynwb.ecephys.ElectrodeGroup at 0x5005401680\\nFields:\\n description: ElectrodeGroup for EMG channels.\\n device: DeviceEMG pynwb.device.Device at 0x5005397520\\nFields:\\n description: EMG electrodes consist of 2 wires with X um diameter made of material Y inserted subcutaneously in the neck.\\n manufacturer: Dan Lab\\n\\n location: Subcutaneous neck\\n | \n", + "ElectrodeGroupEMG | \n", + "EMG2 | \n", + "
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| 0 | \n", + "Brain Region Z | \n", + "ElectrodeGroupEEG pynwb.ecephys.ElectrodeGroup at 0x5005722688\\nFields:\\n description: ElectrodeGroup for EEG channels.\\n device: DeviceEEG pynwb.device.Device at 0x5005397200\\nFields:\\n description: EEG electrodes consist of 2 wires with X um diameter made of material Y wrapped around a metal screw inserted into the brain in location Z.\\n manufacturer: Dan Lab\\n\\n location: Brain Region Z\\n | \n", + "ElectrodeGroupEEG | \n", + "EEG1 | \n", + "
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| 0 | \n", + "Brain Region Z | \n", + "ElectrodeGroupEEG pynwb.ecephys.ElectrodeGroup at 0x5005722688\\nFields:\\n description: ElectrodeGroup for EEG channels.\\n device: DeviceEEG pynwb.device.Device at 0x5005397200\\nFields:\\n description: EEG electrodes consist of 2 wires with X um diameter made of material Y wrapped around a metal screw inserted into the brain in location Z.\\n manufacturer: Dan Lab\\n\\n location: Brain Region Z\\n | \n", + "ElectrodeGroupEEG | \n", + "EEG1 | \n", + "
| 1 | \n", + "Brain Region Z | \n", + "ElectrodeGroupEEG pynwb.ecephys.ElectrodeGroup at 0x5005722688\\nFields:\\n description: ElectrodeGroup for EEG channels.\\n device: DeviceEEG pynwb.device.Device at 0x5005397200\\nFields:\\n description: EEG electrodes consist of 2 wires with X um diameter made of material Y wrapped around a metal screw inserted into the brain in location Z.\\n manufacturer: Dan Lab\\n\\n location: Brain Region Z\\n | \n", + "ElectrodeGroupEEG | \n", + "EEG2 | \n", + "
| 2 | \n", + "Subcutaneous neck | \n", + "ElectrodeGroupEMG pynwb.ecephys.ElectrodeGroup at 0x5005401680\\nFields:\\n description: ElectrodeGroup for EMG channels.\\n device: DeviceEMG pynwb.device.Device at 0x5005397520\\nFields:\\n description: EMG electrodes consist of 2 wires with X um diameter made of material Y inserted subcutaneously in the neck.\\n manufacturer: Dan Lab\\n\\n location: Subcutaneous neck\\n | \n", + "ElectrodeGroupEMG | \n", + "EMG1 | \n", + "
| 3 | \n", + "Subcutaneous neck | \n", + "ElectrodeGroupEMG pynwb.ecephys.ElectrodeGroup at 0x5005401680\\nFields:\\n description: ElectrodeGroup for EMG channels.\\n device: DeviceEMG pynwb.device.Device at 0x5005397520\\nFields:\\n description: EMG electrodes consist of 2 wires with X um diameter made of material Y inserted subcutaneously in the neck.\\n manufacturer: Dan Lab\\n\\n location: Subcutaneous neck\\n | \n", + "ElectrodeGroupEMG | \n", + "EMG2 | \n", + "
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|---|---|
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| Data type | float64 |
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| Shape | (2,) |
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| Data type | float64 |
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| Shape | (2,) |
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| Data type | float64 |
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| Shape | (2,) |
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| Data type | float64 |
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| Shape | (2,) |
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| Data type | float64 |
|---|---|
| Shape | (2,) |
| Array size | 16.00 bytes |
| Data type | float64 |
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| Shape | (2,) |
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| Data type | float64 |
|---|---|
| Shape | (2,) |
| Array size | 16.00 bytes |
| Data type | float64 |
|---|---|
| Shape | (2,) |
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| Data type | float64 |
|---|---|
| Shape | (2,) |
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| \n", + " | start_time | \n", + "stop_time | \n", + "power_in_mW | \n", + "wavelength_in_nm | \n", + "stimulus_type | \n", + "optogenetic_sites | \n", + "
|---|---|---|---|---|---|---|
| id | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 0 | \n", + "0.000328 | \n", + "0.000655 | \n", + "20.0 | \n", + "-1.0 | \n", + "test_pulse | \n", + "[0] | \n", + "
| 1 | \n", + "73.911828 | \n", + "73.912156 | \n", + "20.0 | \n", + "-1.0 | \n", + "test_pulse | \n", + "[0] | \n", + "
| 2 | \n", + "147.823329 | \n", + "147.823657 | \n", + "20.0 | \n", + "-1.0 | \n", + "test_pulse | \n", + "[0] | \n", + "
| 3 | \n", + "213.290353 | \n", + "213.290680 | \n", + "20.0 | \n", + "-1.0 | \n", + "test_pulse | \n", + "[0] | \n", + "
... and 87192 more rows.
| \n", + " | location | \n", + "excitation_wavelength_in_nm | \n", + "emission_wavelength_in_nm | \n", + "indicator | \n", + "optical_fiber | \n", + "excitation_source | \n", + "photodetector | \n", + "dichroic_mirror | \n", + "emission_filter | \n", + "excitation_filter | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|
| id | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 0 | \n", + "Ventral Tegmental Area (VTA) | \n", + "465.0 | \n", + "-1.0 | \n", + "vta_indicator abc.Indicator at 0x5005394320\\nFields:\\n description: <description of the indicator for VTA>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: vta_virus_injection abc.ViralVectorInjection at 0x5005394000\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for VTA>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: vta_virus abc.ViralVector at 0x4996644560\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for VTA>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber1 abc.OpticalFiber at 0x4998151344\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x4998151008\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_1 abc.OpticalFiberModel at 0x4998150672\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 1>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF001\\n | \n", + "excitation_source_calcium_signal abc.ExcitationSource at 0x4998150336\\nFields:\\n description: <description of the excitation source for the calcium signal (465nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_calcium abc.ExcitationSourceModel at 0x4998150000\\nFields:\\n description: <description of the excitation source model for calcium signal>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [460. 470.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| 1 | \n", + "Ventral Tegmental Area (VTA) | \n", + "405.0 | \n", + "-1.0 | \n", + "vta_indicator abc.Indicator at 0x5005394320\\nFields:\\n description: <description of the indicator for VTA>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: vta_virus_injection abc.ViralVectorInjection at 0x5005394000\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for VTA>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: vta_virus abc.ViralVector at 0x4996644560\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for VTA>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber1 abc.OpticalFiber at 0x4998151344\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x4998151008\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_1 abc.OpticalFiberModel at 0x4998150672\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 1>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF001\\n | \n", + "excitation_source_isosbestic_control abc.ExcitationSource at 0x5005398800\\nFields:\\n description: <description of the excitation source for the isosbestic control (405nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_isosbestic abc.ExcitationSourceModel at 0x5005398480\\nFields:\\n description: <description of the excitation source model for isosbestic control>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [400. 410.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| 2 | \n", + "Prefrontal Cortex (PFC) | \n", + "465.0 | \n", + "-1.0 | \n", + "pfc_indicator abc.Indicator at 0x4998144288\\nFields:\\n description: <description of the indicator for PFC>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: pfc_virus_injection abc.ViralVectorInjection at 0x4998143280\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for PFC>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: pfc_virus abc.ViralVector at 0x4998143616\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for PFC>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber2 abc.OpticalFiber at 0x5005399760\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x5005399440\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_2 abc.OpticalFiberModel at 0x5005399120\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 2>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF002\\n | \n", + "excitation_source_calcium_signal abc.ExcitationSource at 0x4998150336\\nFields:\\n description: <description of the excitation source for the calcium signal (465nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_calcium abc.ExcitationSourceModel at 0x4998150000\\nFields:\\n description: <description of the excitation source model for calcium signal>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [460. 470.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| 3 | \n", + "Prefrontal Cortex (PFC) | \n", + "405.0 | \n", + "-1.0 | \n", + "pfc_indicator abc.Indicator at 0x4998144288\\nFields:\\n description: <description of the indicator for PFC>\\n label: <label of the indicator>\\n manufacturer: <manufacturer of the indicator>\\n viral_vector_injection: pfc_virus_injection abc.ViralVectorInjection at 0x4998143280\\nFields:\\n ap_in_mm: -1.0\\n description: <description of viral injection for PFC>\\n dv_in_mm: -1.0\\n hemisphere: <hemisphere>\\n location: <injection location>\\n ml_in_mm: -1.0\\n reference: bregma at the cortical surface\\n viral_vector: pfc_virus abc.ViralVector at 0x4998143616\\nFields:\\n construct_name: <construct name>\\n description: <description of the viral vector for PFC>\\n manufacturer: <manufacturer of the viral vector>\\n titer_in_vg_per_ml: -1.0\\n\\n volume_in_uL: -1.0\\n\\n | \n", + "optical_fiber2 abc.OpticalFiber at 0x5005399760\\nFields:\\n description: <description of the optical fiber>\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x5005399440\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: <hemisphere>\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: bregma\\n\\n model: optical_fiber_model_2 abc.OpticalFiberModel at 0x5005399120\\nFields:\\n core_diameter_in_um: -1.0\\n description: <description of optical fiber model 2>\\n manufacturer: <manufacturer of the optical fiber>\\n model_number: <model of the optical fiber>\\n numerical_aperture: -1.0\\n\\n serial_number: OF002\\n | \n", + "excitation_source_isosbestic_control abc.ExcitationSource at 0x5005398800\\nFields:\\n description: <description of the excitation source for the isosbestic control (405nm)>\\n exposure_time_in_s: -1.0\\n intensity_in_W_per_m2: -1.0\\n model: excitation_source_model_isosbestic abc.ExcitationSourceModel at 0x5005398480\\nFields:\\n description: <description of the excitation source model for isosbestic control>\\n excitation_mode: one-photon\\n manufacturer: <manufacturer of the excitation source>\\n model_number: <model of the excitation source>\\n source_type: LED\\n wavelength_range_in_nm: [400. 410.]\\n\\n power_in_W: -1.0\\n | \n", + "photodetector abc.Photodetector at 0x5005721680\\nFields:\\n description: <description of the photodetector>\\n model: photodetector_model abc.PhotodetectorModel at 0x4998151680\\nFields:\\n description: <description of the photodetector model>\\n detector_type: photodiode\\n gain: -1.0\\n gain_unit: V/W\\n manufacturer: <manufacturer of the photodetector>\\n model_number: <model of the photodetector>\\n wavelength_range_in_nm: [400. 700.]\\n\\n serial_number: PD001\\n | \n", + "dichroic_mirror abc.DichroicMirror at 0x4998148992\\nFields:\\n description: <description of the dichroic mirror>\\n model: dichroic_mirror_model abc.DichroicMirrorModel at 0x4998148656\\nFields:\\n angle_of_incidence_in_degrees: -1.0\\n cut_off_wavelength_in_nm: -1.0\\n cut_on_wavelength_in_nm: -1.0\\n description: <description of the dichroic mirror model>\\n manufacturer: <manufacturer of the dichroic mirror>\\n model_number: <model of the dichroic mirror>\\n reflection_band_in_nm: [-1. -1.]\\n transmission_band_in_nm: [-1. -1.]\\n\\n serial_number: DM001\\n | \n", + "emission_filter abc.BandOpticalFilter at 0x4998149664\\nFields:\\n description: <description of emission filter>\\n model: emission_filter_model abc.BandOpticalFilterModel at 0x4998149328\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of emission filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the emission filter>\\n model_number: <model of the emission filter>\\n\\n | \n", + "excitation_filter abc.BandOpticalFilter at 0x5005398160\\nFields:\\n description: <description of excitation filter>\\n model: excitation_filter_model abc.BandOpticalFilterModel at 0x5005397840\\nFields:\\n bandwidth_in_nm: -1.0\\n center_wavelength_in_nm: -1.0\\n description: <description of excitation filter model>\\n filter_type: Bandpass\\n manufacturer: <manufacturer of the excitation filter>\\n model_number: <model of the excitation filter>\\n\\n | \n", + "
| \n", + " | optical_fiber | \n", + "effector | \n", + "excitation_source | \n", + "
|---|---|---|---|
| id | \n", + "\n", + " | \n", + " | \n", + " |
| 0 | \n", + "optical_fiberVTA abc.OpticalFiber at 0x4997590080\\nFields:\\n description: Optical fiber used for optogenetic stimulation in the VTA.\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x4997589776\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: right\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: Bregma at the cortical surface\\n\\n model: optical_fiber_model abc.OpticalFiberModel at 0x5005400080\\nFields:\\n core_diameter_in_um: 200.0\\n description: Optical fiber used for optogenetic stimulation.\\n ferrule_diameter_in_mm: 2.5\\n ferrule_model: FC\\n ferrule_name: FC Connector with Zirconia Ferrule\\n manufacturer: Doric Lenses\\n model_number: MFP_200/220/900-0.37_2m_FC-FC_LAF\\n numerical_aperture: 0.39\\n\\n | \n", + "chrimsonR_vta abc.Effector at 0x5005396880\\nFields:\\n description: ChrimsonR opsin used for optogenetic stimulation injected into the VTA.\\n label: ChrimsonR\\n manufacturer: Addgene\\n viral_vector_injection: virus_injection_vta abc.ViralVectorInjection at 0x4997588864\\nFields:\\n ap_in_mm: -3.8\\n description: Viral injection into the Ventral Tegmental Area (VTA).\\n dv_in_mm: -4.5\\n hemisphere: right\\n location: Ventral Tegmental Area (VTA)\\n ml_in_mm: 0.3\\n reference: bregma at the cortical surface\\n viral_vector: virus abc.ViralVector at 0x5005395920\\nFields:\\n construct_name: pAAV-Syn-FLEX-rc[ChrimsonR-tdTomato] (AAV5)\\n description: pAAV-Syn-FLEX-rc[ChrimsonR-tdTomato] (AAV5) viral vector was used for optogenetic experiments.\\n manufacturer: Addgene\\n titer_in_vg_per_ml: 5000000000000.0\\n\\n volume_in_uL: 0.7\\n\\n | \n", + "optogenetic_excitation_source abc.ExcitationSource at 0x5005401360\\nFields:\\n description: An LED device used for optogenetic stimulation.\\n model: optogenetic_excitation_source_model abc.ExcitationSourceModel at 0x5005401040\\nFields:\\n description: An LED device used for optogenetic stimulation.\\n excitation_mode: one-photon\\n manufacturer: RWD Life Sciences\\n model_number: MRL-III-635L-1-1\\n source_type: LED\\n\\n power_in_W: 0.02\\n | \n", + "
| 1 | \n", + "optical_fiberBF abc.OpticalFiber at 0x5005400720\\nFields:\\n description: Optical fiber used for optogenetic stimulation in the BF.\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x5005400400\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: right\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: Bregma at the cortical surface\\n\\n model: optical_fiber_model abc.OpticalFiberModel at 0x5005400080\\nFields:\\n core_diameter_in_um: 200.0\\n description: Optical fiber used for optogenetic stimulation.\\n ferrule_diameter_in_mm: 2.5\\n ferrule_model: FC\\n ferrule_name: FC Connector with Zirconia Ferrule\\n manufacturer: Doric Lenses\\n model_number: MFP_200/220/900-0.37_2m_FC-FC_LAF\\n numerical_aperture: 0.39\\n\\n | \n", + "chrimsonR_bf abc.Effector at 0x4998147648\\nFields:\\n description: ChrimsonR opsin used for optogenetic stimulation injected into the BF.\\n label: ChrimsonR\\n manufacturer: Addgene\\n viral_vector_injection: virus_injection_bf abc.ViralVectorInjection at 0x5005396240\\nFields:\\n ap_in_mm: 0.1\\n description: Viral injection into the Basal Forebrain (BF).\\n dv_in_mm: -5.3\\n hemisphere: right\\n location: Basal Forebrain (BF)\\n ml_in_mm: 1.5\\n reference: bregma at the cortical surface\\n viral_vector: virus abc.ViralVector at 0x5005395920\\nFields:\\n construct_name: pAAV-Syn-FLEX-rc[ChrimsonR-tdTomato] (AAV5)\\n description: pAAV-Syn-FLEX-rc[ChrimsonR-tdTomato] (AAV5) viral vector was used for optogenetic experiments.\\n manufacturer: Addgene\\n titer_in_vg_per_ml: 5000000000000.0\\n\\n volume_in_uL: 0.7\\n\\n | \n", + "optogenetic_excitation_source abc.ExcitationSource at 0x5005401360\\nFields:\\n description: An LED device used for optogenetic stimulation.\\n model: optogenetic_excitation_source_model abc.ExcitationSourceModel at 0x5005401040\\nFields:\\n description: An LED device used for optogenetic stimulation.\\n excitation_mode: one-photon\\n manufacturer: RWD Life Sciences\\n model_number: MRL-III-635L-1-1\\n source_type: LED\\n\\n power_in_W: 0.02\\n | \n", + "
| 2 | \n", + "optical_fiberLC abc.OpticalFiber at 0x4997589472\\nFields:\\n description: Optical fiber used for optogenetic stimulation in the LC.\\n fiber_insertion: fiber_insertion abc.FiberInsertion at 0x4997589168\\nFields:\\n depth_in_mm: -1.0\\n hemisphere: right\\n insertion_angle_pitch_in_deg: 0.0\\n insertion_angle_roll_in_deg: 0.0\\n insertion_angle_yaw_in_deg: 0.0\\n insertion_position_ap_in_mm: -1.0\\n insertion_position_dv_in_mm: -1.0\\n insertion_position_ml_in_mm: -1.0\\n position_reference: Bregma at the cortical surface\\n\\n model: optical_fiber_model abc.OpticalFiberModel at 0x5005400080\\nFields:\\n core_diameter_in_um: 200.0\\n description: Optical fiber used for optogenetic stimulation.\\n ferrule_diameter_in_mm: 2.5\\n ferrule_model: FC\\n ferrule_name: FC Connector with Zirconia Ferrule\\n manufacturer: Doric Lenses\\n model_number: MFP_200/220/900-0.37_2m_FC-FC_LAF\\n numerical_aperture: 0.39\\n\\n | \n", + "chrimsonR_lc abc.Effector at 0x5005396560\\nFields:\\n description: ChrimsonR opsin used for optogenetic stimulation injected into the LC.\\n label: ChrimsonR\\n manufacturer: Addgene\\n viral_vector_injection: virus_injection_lc abc.ViralVectorInjection at 0x4997585216\\nFields:\\n ap_in_mm: -5.5\\n description: Viral injection into the Locus Coeruleus (LC).\\n dv_in_mm: -3.6\\n hemisphere: right\\n location: Locus Coeruleus (LC)\\n ml_in_mm: 0.9\\n reference: bregma at the cortical surface\\n viral_vector: virus abc.ViralVector at 0x5005395920\\nFields:\\n construct_name: pAAV-Syn-FLEX-rc[ChrimsonR-tdTomato] (AAV5)\\n description: pAAV-Syn-FLEX-rc[ChrimsonR-tdTomato] (AAV5) viral vector was used for optogenetic experiments.\\n manufacturer: Addgene\\n titer_in_vg_per_ml: 5000000000000.0\\n\\n volume_in_uL: 0.7\\n\\n | \n", + "optogenetic_excitation_source abc.ExcitationSource at 0x5005401360\\nFields:\\n description: An LED device used for optogenetic stimulation.\\n model: optogenetic_excitation_source_model abc.ExcitationSourceModel at 0x5005401040\\nFields:\\n description: An LED device used for optogenetic stimulation.\\n excitation_mode: one-photon\\n manufacturer: RWD Life Sciences\\n model_number: MRL-III-635L-1-1\\n source_type: LED\\n\\n power_in_W: 0.02\\n | \n", + "