From a0df46be93cf005e39463639b545cf698643cb0e Mon Sep 17 00:00:00 2001 From: Thinh Nguyen Date: Tue, 4 Mar 2025 17:04:13 -0600 Subject: [PATCH 01/27] update: install neo from source until 0.14.1 release --- setup.py | 1 + 1 file changed, 1 insertion(+) diff --git a/setup.py b/setup.py index 0ff4bf08..c08341ab 100644 --- a/setup.py +++ b/setup.py @@ -34,6 +34,7 @@ "openpyxl", "plotly", "seaborn", + "neo @ git+https://github.com/NeuralEnsemble/python-neo.git", # install neo from source until 0.14.1 release "spikeinterface", "scikit-image", "nbformat>=4.2.0", From 234f38ee758ae71e8b521e02b87cec6f89b23778 Mon Sep 17 00:00:00 2001 From: MilagrosMarin Date: Tue, 20 May 2025 00:44:04 +0100 Subject: [PATCH 02/27] fix(docs): update home URL from `datajoint.com/docs` to `docs.datajoint.com` --- .github/ISSUE_TEMPLATE/config.yml | 2 +- CONTRIBUTING.md | 2 +- README.md | 2 +- docs/mkdocs.yaml | 2 +- docs/src/.overrides/partials/nav.html | 7 +++---- docs/src/concepts.md | 4 ++-- docs/src/tutorials/index.md | 2 +- 7 files changed, 10 insertions(+), 11 deletions(-) diff --git a/.github/ISSUE_TEMPLATE/config.yml b/.github/ISSUE_TEMPLATE/config.yml index d31fbace..74368549 100644 --- a/.github/ISSUE_TEMPLATE/config.yml +++ b/.github/ISSUE_TEMPLATE/config.yml @@ -1,5 +1,5 @@ blank_issues_enabled: false contact_links: - name: DataJoint Contribution Guideline - url: https://docs.datajoint.org/python/community/02-Contribute.html + url: https://docs.datajoint.com/about/contribute/ about: Please make sure to review the DataJoint Contribution Guidelines \ No newline at end of file diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 2bd0f498..61a342d6 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,5 +1,5 @@ # Contribution Guidelines This project follows the -[DataJoint Contribution Guidelines](https://datajoint.com/docs/about/contribute/). +[DataJoint Contribution Guidelines](https://docs.datajoint.com/about/contribute/). Please reference the link for more full details. diff --git a/README.md b/README.md index 85277136..aad51cad 100644 --- a/README.md +++ b/README.md @@ -44,7 +44,7 @@ environment and notebooks to learn the pipeline. + [Interactive tutorial on GitHub Codespaces](https://github.com/datajoint/element-array-ephys#interactive-tutorial) -+ [Documentation](https://datajoint.com/docs/elements/element-array-ephys) ++ [Documentation](https://docs.datajoint.com/elements/element-array-ephys/) ## Support diff --git a/docs/mkdocs.yaml b/docs/mkdocs.yaml index e211069a..2fec112c 100644 --- a/docs/mkdocs.yaml +++ b/docs/mkdocs.yaml @@ -1,7 +1,7 @@ --- # ---------------------- PROJECT SPECIFIC --------------------------- site_name: DataJoint Documentation -site_url: http://localhost/docs/elements/element-array-ephys +site_url: https://docs.datajoint.com/elements/element-array-ephys/ repo_url: https://github.com/datajoint/element-array-ephys repo_name: datajoint/element-array-ephys nav: diff --git a/docs/src/.overrides/partials/nav.html b/docs/src/.overrides/partials/nav.html index cd6326b6..faac796a 100644 --- a/docs/src/.overrides/partials/nav.html +++ b/docs/src/.overrides/partials/nav.html @@ -7,15 +7,14 @@ {% endif %}