paramset 250 - kilosort 2.5 - SpikeSortingError: Spike sorting in docker failed

[MilagrosMarin]

error stack:

Traceback (most recent call last):
  File "/opt/conda/lib/python3.10/site-packages/datajoint/autopopulate.py", line 322, in _populate1
    make(dict(key), **(make_kwargs or {}))
  File "/opt/conda/lib/python3.10/site-packages/element_array_ephys/spike_sorting/si_spike_sorting.py", line 268, in make
    _run_sorter()
  File "/opt/conda/lib/python3.10/site-packages/element_interface/utils.py", line 235, in wrapped
    results = func(*args, **kwargs)
  File "/opt/conda/lib/python3.10/site-packages/element_array_ephys/spike_sorting/si_spike_sorting.py", line 254, in _run_sorter
    si_sorting: si.sorters.BaseSorter = si.sorters.run_sorter(
  File "/opt/conda/lib/python3.10/site-packages/spikeinterface/sorters/runsorter.py", line 193, in run_sorter
    return run_sorter_container(
  File "/opt/conda/lib/python3.10/site-packages/spikeinterface/sorters/runsorter.py", line 648, in run_sorter_container
    raise SpikeSortingError(f"Spike sorting in {mode} failed with the following error:\n{run_sorter_output}")
spikeinterface.sorters.utils.misc.SpikeSortingError: Spike sorting in docker failed with the following error:
/mnt/efs/works/org/utah/proj/organoids/outbox/MB5-8_raw/202409071449_202409071454/MB05/kilosort2-5_250/kilosort2_5/in_container_sorter_script.py:23: DeprecationWarning: `output_folder` is deprecated and will be removed in version 0.103.0 Please use folder instead
  sorting = run_sorter_local(
write_binary_recording: 100%|##########| 300/300 [00:21<00:00, 13.90it/s]
RUNNING SHELL SCRIPT: /mnt/efs/works/org/utah/proj/organoids/outbox/MB5-8_raw/202409071449_202409071454/MB05/kilosort2-5_250/kilosort2_5/spike_sorting/sorter_output/run_kilosort2_5.sh
Warning: X does not support locale C.UTF-8

Time   1s. Computing whitening matrix.. 

Getting channel whitening matrix... 

Channel-whitening matrix computed. 

Time   4s. Loading raw data and applying filters... 

Time  13s. Finished preprocessing 12 batches. 

Drift correction DISABLED

Time  15s. Optimizing templates ...

15.53 sec, 1 / 12 batches, 5 units, nspks: 2.6931, mu: 18.0911, nst0: 3, merges: 0.1000, 0.0000, 0.2000 

Elapsed time is 22.274838 seconds.

----------------------------------------Index in position 1 is invalid. Array indices must be positive integers or logical values.
Error running kilosort2_5
Traceback (most recent call last):
  File "/mnt/efs/works/org/utah/proj/organoids/outbox/MB5-8_raw/202409071449_202409071454/MB05/kilosort2-5_250/kilosort2_5/in_container_sorter_script.py", line 23, in <module>
    sorting = run_sorter_local(
  File "/root/.local/lib/python3.9/site-packages/spikeinterface/sorters/runsorter.py", line 261, in run_sorter_local
    SorterClass.run_from_folder(folder, raise_error, verbose)
  File "/root/.local/lib/python3.9/site-packages/spikeinterface/sorters/basesorter.py", line 302, in run_from_folder
    raise SpikeSortingError(
spikeinterface.sorters.utils.misc.SpikeSortingError: Spike sorting error trace:
Traceback (most recent call last):
  File "/root/.local/lib/python3.9/site-packages/spikeinterface/sorters/basesorter.py", line 262, in run_from_folder
    SorterClass._run_from_folder(sorter_output_folder, sorter_params, verbose)
  File "/root/.local/lib/python3.9/site-packages/spikeinterface/sorters/external/kilosortbase.py", line 217, in _run_from_folder
    raise Exception(f"{cls.sorter_name} returned a non-zero exit code")
Exception: kilosort2_5 returned a non-zero exit code

Spike sorting failed. You can inspect the runtime trace in /mnt/efs/works/org/utah/proj/organoids/outbox/MB5-8_raw/202409071449_202409071454/MB05/kilosort2-5_250/kilosort2_5/spike_sorting/spikeinterface_log.json.

Solution: update do_correction from True to False