when I
cellcounts.txt
ran the code ./01-check_data.sh methylation. it appeared the error as below. I obtained the cellcounts.txt file by running the code: qc.objects <- meffil.qc(samplesheet, cell.type.reference="blood gse35069 complete", verbose=TRUE) and the attached contains the cellcounts.txt file.
Number of measured cell types: 8
Cell types:
Bcell
CD4T
CD8T
Eos
Mono
Neu
NK
Warning message:
ERROR: the names in the measured cellcounts file do not match Bcells, Tcells, Eos, Mono, Neu, Baso
Completed checks
Summary of data:
n_CpGs: 863166
methylation_sample_size: 370
geno_meth_common_ids: 370
measured_cellcounts: Bcell, CD4T, CD8T, Eos, Mono, Neu, NK
when I
cellcounts.txt
ran the code ./01-check_data.sh methylation. it appeared the error as below. I obtained the cellcounts.txt file by running the code: qc.objects <- meffil.qc(samplesheet, cell.type.reference="blood gse35069 complete", verbose=TRUE) and the attached contains the cellcounts.txt file.
Number of measured cell types: 8
Cell types:
Bcell
CD4T
CD8T
Eos
Mono
Neu
NK
Warning message:
ERROR: the names in the measured cellcounts file do not match Bcells, Tcells, Eos, Mono, Neu, Baso
Completed checks
Summary of data:
n_CpGs: 863166
methylation_sample_size: 370
geno_meth_common_ids: 370
measured_cellcounts: Bcell, CD4T, CD8T, Eos, Mono, Neu, NK