From 323ad2fce4365a76c4a9a7893a4b4c061ed0a0b9 Mon Sep 17 00:00:00 2001
From: Michelle Johnson <77988989+MicycleJ@users.noreply.github.com>
Date: Thu, 6 Aug 2026 12:13:10 -0700
Subject: [PATCH] fixed typo, fiberhmm-extract-tags > fiberhmm-extract

I think this is a leftover typo? I'm not seeing extract-tags as a viable command, but I might be wrong
---
 fiberhmm/cli/apply.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/fiberhmm/cli/apply.py b/fiberhmm/cli/apply.py
index 01f2b0c..1d2e685 100755
--- a/fiberhmm/cli/apply.py
+++ b/fiberhmm/cli/apply.py
@@ -410,7 +410,7 @@ def main():
     else:
         print("\nDone!")
         print("\nTo extract BED12/bigBed for browser visualization:")
-        print(f"  fiberhmm-extract-tags -i {output_bam}")
+        print(f"  fiberhmm-extract -i {output_bam}")
 
 
 if __name__ == '__main__':