From f4b3cb4b3f5602fb2af2ca858af84e7956aebb35 Mon Sep 17 00:00:00 2001
From: "github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Thu, 13 Aug 2026 22:26:44 +0000
Subject: [PATCH] chore: release

---
 CHANGELOG.md                      | 12 ++++++++++++
 Cargo.lock                        |  4 ++--
 Cargo.toml                        |  4 ++--
 molecular-annotation/CHANGELOG.md |  8 ++++++++
 molecular-annotation/Cargo.toml   |  2 +-
 5 files changed, 25 insertions(+), 5 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 7de438a6..faa89445 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -2,6 +2,18 @@
 
 All notable changes to this project will be documented in this file.
 
+## [0.13.0](https://github.com/fiberseq/fibertools-rs/compare/v0.12.1...v0.13.0) - 2026-08-13
+
+### Fixed
+
+- [**breaking**] write MA-family tags as Ma/Aq/An (SAM local-use spelling) + legacy-tag hygiene ([#124](https://github.com/fiberseq/fibertools-rs/pull/124))
+- make the Read the Docs (py-ft) build independent of the pyft Rust build ([#127](https://github.com/fiberseq/fibertools-rs/pull/127))
+- MA-refactor fallout — qc, track-decorators, filter expressions, mock-fire ([#123](https://github.com/fiberseq/fibertools-rs/pull/123))
+
+### Other
+
+- cache cargo artifacts, parallelize jobs and tests ([#128](https://github.com/fiberseq/fibertools-rs/pull/128))
+
 ## [0.12.1](https://github.com/fiberseq/fibertools-rs/compare/v0.12.0...v0.12.1) - 2026-08-13
 
 ### Fixed
diff --git a/Cargo.lock b/Cargo.lock
index 5fe36776..f3f83883 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -2413,7 +2413,7 @@ checksum = "835a3dc7d1ec9e75e2b5fb4ba75396837112d2060b03f7d43bc1897c7f7211da"
 
 [[package]]
 name = "fibertools-rs"
-version = "0.12.1"
+version = "0.13.0"
 dependencies = [
  "anstyle",
  "anyhow",
@@ -4124,7 +4124,7 @@ checksum = "4e519fd9c6131c1c9a4a67f8bdc4f32eb4105b16c1468adea1b8e68c98c85ec4"
 
 [[package]]
 name = "molecular-annotation"
-version = "0.0.2"
+version = "0.0.3"
 dependencies = [
  "bio 2.3.0",
  "lazy_static",
diff --git a/Cargo.toml b/Cargo.toml
index 5e1b1621..0b70824a 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -10,7 +10,7 @@ license = "MIT"
 name = "fibertools-rs"
 readme = "README.md"
 repository = "https://github.com/fiberseq/fibertools-rs"
-version = "0.12.1"
+version = "0.13.0"
 # exclude py-ft and test data from cargo publish since they are too large
 exclude = ["py-ft/", "tests/data/", "Train-FIRE/"]
 
@@ -26,7 +26,7 @@ rust-htslib = "0.46"
 # published fibertools-rs manifest. For 0.0.x crates a caret requirement is an
 # exact pin (^0.0.1 == 0.0.1), so this welds each fibertools-rs release to the
 # specific molecular-annotation release it was built against.
-molecular-annotation = { path = "molecular-annotation", version = "0.0.2" }
+molecular-annotation = { path = "molecular-annotation", version = "0.0.3" }
 
 [[bin]]
 name = "ft"
diff --git a/molecular-annotation/CHANGELOG.md b/molecular-annotation/CHANGELOG.md
index fd58049e..5f2d4427 100644
--- a/molecular-annotation/CHANGELOG.md
+++ b/molecular-annotation/CHANGELOG.md
@@ -7,6 +7,14 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.0.3](https://github.com/fiberseq/fibertools-rs/compare/molecular-annotation-v0.0.2...molecular-annotation-v0.0.3) - 2026-08-13
+
+### Fixed
+
+- [**breaking**] write MA-family tags as Ma/Aq/An (SAM local-use spelling) + legacy-tag hygiene ([#124](https://github.com/fiberseq/fibertools-rs/pull/124))
+- leading soft clips double-counted in pyMA liftover ([#126](https://github.com/fiberseq/fibertools-rs/pull/126))
+- MA-refactor fallout — qc, track-decorators, filter expressions, mock-fire ([#123](https://github.com/fiberseq/fibertools-rs/pull/123))
+
 ## [0.0.2](https://github.com/fiberseq/fibertools-rs/compare/molecular-annotation-v0.0.1...molecular-annotation-v0.0.2) - 2026-07-21
 
 ### Added
diff --git a/molecular-annotation/Cargo.toml b/molecular-annotation/Cargo.toml
index 96780864..6a56e39c 100644
--- a/molecular-annotation/Cargo.toml
+++ b/molecular-annotation/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "molecular-annotation"
-version = "0.0.2"
+version = "0.0.3"
 edition = "2021"
 description = "Library for molecular annotations in SAM/BAM files"
 license = "MIT"