feat(ENGKNOW-3046): Enable multiple cram reference files. · gorpipe/gor@566f987

Failed test found in: gortools/build/test-results/test/TEST-gorsat.UTestCram.xml Error: org.gorpipe.exceptions.GorResourceException: Fasta file ../tests/data/external/samtools/cram_query_sorted.fasta is invalid cram reference as it is missing dict file

gorsat.UTestCram ► readCramWithFastaReferenceInRefFile: model/src/main/java/org/gorpipe/gor/driver/providers/stream/datatypes/cram/reference/FolderReferenceSource.java#L102

Failed test found in: gortools/build/test-results/test/TEST-gorsat.UTestCram.xml Error: org.gorpipe.exceptions.GorResourceException: Fasta file ../tests/data/external/samtools/cram_query_sorted.fasta is invalid cram reference as it is missing dict file

gorsat.UTestCram ► readCramWithFastaReferenceFromProperty: model/src/main/java/org/gorpipe/gor/driver/providers/stream/datatypes/cram/reference/FolderReferenceSource.java#L102

Failed test found in: gortools/build/test-results/test/TEST-gorsat.UTestCram.xml Error: org.gorpipe.exceptions.GorResourceException: Fasta file ../tests/data/external/samtools/cram_query_sorted.fasta is invalid cram reference as it is missing dict file

gorsat.UTestCram ► readCramWithFastaReferenceFromConfig: model/src/main/java/org/gorpipe/gor/driver/providers/stream/datatypes/cram/reference/FolderReferenceSource.java#L102

Failed test found in: gortools/build/test-results/test/TEST-gorsat.UTestCram.xml Error: org.gorpipe.exceptions.GorResourceException: Fasta file /home/runner/work/gor/gor/tests/data/external/samtools/cram_query_sorted.fasta is invalid cram reference as it is missing dict file

gorsat.UTestCram ► readCramWithFastaReference: model/src/main/java/org/gorpipe/gor/driver/providers/stream/datatypes/cram/reference/FolderReferenceSource.java#L102

Failed test found in: gortools/build/test-results/test/TEST-gorsat.UTestCram.xml Error: org.gorpipe.exceptions.GorResourceException: Fasta file ../tests/data/external/samtools/cram_query_sorted.fasta is invalid cram reference as it is missing dict file

gorsat.UTestCram ► readCramWithIncompatibleFastaReference: model/src/main/java/org/gorpipe/gor/driver/providers/stream/datatypes/cram/reference/FolderReferenceSource.java#L102

Failed test found in: gortools/build/test-results/test/TEST-gorsat.UTestCram.xml Error: java.lang.Exception: Unexpected exception, expected<org.gorpipe.exceptions.GorSystemException> but was<org.gorpipe.exceptions.GorResourceException>

test

Failed test were found and 'fail-on-error' option is set to true

test

Process completed with exit code 1.

test

Test report summary exceeded limit of 65535 bytes and will be trimmed

readCramFromBamLinkWithFastaReference (gorsat.UTestCram) failed: gorsat.UTestCram#L0