Support of pClamp .abf files

[AdeFouchier]

Hi,

Are pClamp .abf files supported by SSSort. If not, any advise on how to convert .abf files to make them compatible ?

Best regards,

Arthur de Fouchier

[AdeFouchier]

As a solution, there is a python package that read abf : "pyabf]", but I did not try it.
Another solution is the readABF R package that allows to read .abf (Axon Binary format) files and then save them as .csv using R built in function.

[grg2rsr]

Thanks for reporting this, I will check it out. Could you provide me with an example file?

[AdeFouchier]

Sure, here it is :

2025_01_16_0012-filtered_and_raw.zip

In there, there is two files of the same Drosophila ab3 recording. The stimulation is show by the 2nd input. Input 1 and 3 are the same but input 1 is filtered for noise belonw 50 Hz.
One of the file is in abf format, the other in Axon Text File (.atf) which can be read with a text editor and is a sort of tsv format.

Hopes it help !

Cheers,

Arthur

[grg2rsr]

thanks, will check it out!