Suggestion to use WhatsHap for phasing VCFs

[jonng1000]

Hi, I understand that we are supposed to use an outdated version of GATK to phase VCFs. May I suggest WhatsHap instead? It seems maintained and easy to use, hence it could be an alternative

[susannasiebert]

Thank you for bringing this tool to our attention. I will bring it up with the team.

[jonng1000]

Welcome, happy to help, i think pvacseq is an very useful and well designed tool =)