Cannot find cafetutorial_report_analysis file

[ZhangXu-CAS]

Hi,

The share of cafetutorial_report_analysis.py in the website: https://iu.app.box.com/v/cafetutorial-files/folder/22161236877 has been removed. Could please upload a new copy of it to GitHub, or send it to my e-mail: zhangxu173@mails.ucas.ac.cn ?

Thank you very much!

Xu Zhang

[benfulton]

The files are now available at https://github.com/hahnlab/cafe_tutorial .

[ZhangXu-CAS]

I find it. Thanks

Xu Zhang

[C2051]

Due to network reasons, I can't open the website for asking questions you provided, so I put forward my questions under this issue, hoping to get your answers.This is the result of running cafe under linux subsystem, and the software is the latest compiled version. Look forward for your reply.

(base) wtc@PC10-7742:~/anaconda3/bin$ cafe cafetutorial_run1.sh

Family information: filtered_cafe_input.txt
Log: reports/log_run1.txttree
The number of families is 12619
Root Family size : 1 ~ 112
Family size : 0 ~ 140
P-value: 0.01
Num of Threads: 4
Num of Random: 1000
cafe: ((((cat:68.710507,horse:68.710507):4.566782,cow:73.277289):20.722711,(((((chimp:4.444172,human:4.444172):6.682678,orang:11.126850):2.285855,gibbon:13.412706):7.211527,(macaque:4.567240,baboon:4.567240):16.056992):16.060702,marmoset:36.684935):57.315065):38.738021,(rat:36.302445,mouse:36.302445):96.435575): command not found