|
| 1 | +""" |
| 2 | +Idealized percent-still-unchanged curve for fixed (delta, lambda) = (0.05, 0.5). |
| 3 | +
|
| 4 | +Mimics the axis and theme styling of scripts/osm_data/data_viz.py but plots |
| 5 | +only the analytic trend implied by the ZIE turnover model, with no observed |
| 6 | +data and no uncertainty band: |
| 7 | +
|
| 8 | + P(still unchanged at t) = (1 - delta) * exp(-lambda * t) |
| 9 | +
|
| 10 | +with t in years. |
| 11 | +""" |
| 12 | + |
| 13 | +from pathlib import Path |
| 14 | + |
| 15 | +import numpy as np |
| 16 | +import pandas as pd |
| 17 | + |
| 18 | +import matplotlib |
| 19 | +matplotlib.use("Agg") # noqa: E402 |
| 20 | +import plotnine as gg # noqa: E402 |
| 21 | + |
| 22 | +# ---------------------------------------------------------------------------------------- |
| 23 | +# Fixed parameters |
| 24 | +# ---------------------------------------------------------------------------------------- |
| 25 | + |
| 26 | +DELTA = 0.05 |
| 27 | +LAMBDA = 0.25 # per year |
| 28 | +YEAR_RANGE = 10 |
| 29 | +N_POINTS = 1001 |
| 30 | + |
| 31 | +OUT_PATH = Path("~/data/openpois/exploratory/idealized_stability_curve.png").expanduser() |
| 32 | + |
| 33 | +# ---------------------------------------------------------------------------------------- |
| 34 | +# Plot construction |
| 35 | +# ---------------------------------------------------------------------------------------- |
| 36 | + |
| 37 | + |
| 38 | +def idealized_curve( |
| 39 | + delta: float, |
| 40 | + lam: float, |
| 41 | + year_range: float, |
| 42 | + n_points: int = 1001, |
| 43 | +) -> pd.DataFrame: |
| 44 | + """Return a DataFrame with columns (year, y) for the analytic trend.""" |
| 45 | + year = np.linspace(0, year_range, n_points) |
| 46 | + y = (1.0 - delta) * np.exp(-lam * year) |
| 47 | + return pd.DataFrame({'year': year, 'y': y}) |
| 48 | + |
| 49 | + |
| 50 | +def idealized_plot_create( |
| 51 | + df: pd.DataFrame, |
| 52 | + title: str | None = None, |
| 53 | + subtitle: str | None = None, |
| 54 | + x_label: str = '', |
| 55 | + y_label: str = '', |
| 56 | + year_range: float = 10, |
| 57 | +) -> gg.ggplot: |
| 58 | + """Single-trend stability plot, styled to match change_plot_create.""" |
| 59 | + fig = ( |
| 60 | + gg.ggplot( |
| 61 | + data = df, |
| 62 | + mapping = gg.aes(x = 'year', y = 'y'), |
| 63 | + ) + |
| 64 | + gg.geom_line(color = 'darkred', size = 1) + |
| 65 | + gg.labs( |
| 66 | + title = title, |
| 67 | + subtitle = subtitle, |
| 68 | + x = x_label, |
| 69 | + y = y_label, |
| 70 | + ) + |
| 71 | + gg.scale_y_continuous( |
| 72 | + limits = (0, 1.01), |
| 73 | + breaks = np.arange(0, 1.01, 0.25), |
| 74 | + labels = [f"{x * 100:.0f}%" for x in np.arange(0, 1.01, 0.25)], |
| 75 | + ) + |
| 76 | + gg.scale_x_continuous( |
| 77 | + limits = (0, year_range + 0.01), |
| 78 | + breaks = np.arange(year_range + 1), |
| 79 | + labels = [f"{x:.0f}" for x in np.arange(year_range + 1)], |
| 80 | + ) + |
| 81 | + gg.theme_bw() |
| 82 | + ) |
| 83 | + return fig |
| 84 | + |
| 85 | + |
| 86 | +# ---------------------------------------------------------------------------------------- |
| 87 | +# Main workflow |
| 88 | +# ---------------------------------------------------------------------------------------- |
| 89 | + |
| 90 | +if __name__ == "__main__": |
| 91 | + df = idealized_curve( |
| 92 | + delta = DELTA, |
| 93 | + lam = LAMBDA, |
| 94 | + year_range = YEAR_RANGE, |
| 95 | + n_points = N_POINTS, |
| 96 | + ) |
| 97 | + fig = idealized_plot_create( |
| 98 | + df = df, |
| 99 | + title = "Idealized stability curve", |
| 100 | + subtitle = f"δ = {DELTA}, λ = {LAMBDA} / year", |
| 101 | + x_label = "Years since tag", |
| 102 | + y_label = "Proportion remaining unchanged", |
| 103 | + year_range = YEAR_RANGE, |
| 104 | + ) |
| 105 | + OUT_PATH.parent.mkdir(parents = True, exist_ok = True) |
| 106 | + fig.save( |
| 107 | + filename = OUT_PATH, |
| 108 | + width = 10, |
| 109 | + height = 6, |
| 110 | + units = 'in', |
| 111 | + dpi = 300, |
| 112 | + verbose = False, |
| 113 | + ) |
| 114 | + print(f"Saved: {OUT_PATH}") |
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