REMEMBER HEADER FOR MVP #7
Description
MVP want a file with the following header:
GENE_NAMEDATASET TISSUE SNPID RSID CHR POS_38 POS_37 BETA SE MinusLog10PVAL EFFECT_ALLELE OTHER_ALLELE MAF EAF SAMPLESIZE GENE_ENSEMBL TSS_37 TSS_38 SeqID UNIPROT PROTEIN_NAME PROTEIN_LONG_NAME PVE FILENAME Gene.type.
DATASET= INTERVAL_CHRIS_META_COJO_UNCONDITIONAL
TISSUE=WholeBlood
FILENAME = NA
Gene.type == "protein_coding"
res$PVE = ( 2*(res$BETA^2)res$MAF(1-res$MAF) ) / ( 2*(res$BETA^2)res$MAF(1-res$MAF)+(res$SE^2)2res$SAMPLESIZEres$MAF(1-res$MAF) )