From b95fab5c02775c9d43040e6012f8a60568a182b3 Mon Sep 17 00:00:00 2001
From: Nikhil Yerra <nikhil.yerra@c0704a-s8.ufhpc>
Date: Mon, 20 Nov 2023 17:28:44 -0500
Subject: [PATCH] modified ometiff_second_stitching.cwl and run_cytokit.cwl in
 steps folder

---
 steps/ometiff_second_stitching.cwl | 7 ++++---
 steps/run_cytokit.cwl              | 2 +-
 2 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/steps/ometiff_second_stitching.cwl b/steps/ometiff_second_stitching.cwl
index 6da9406..2760689 100644
--- a/steps/ometiff_second_stitching.cwl
+++ b/steps/ometiff_second_stitching.cwl
@@ -36,9 +36,10 @@ steps:
       cytokit_config:
         source: cytokit_config
       num_concurrent_tasks:
-        type: int
-        inputBinding:
-        prefix: "--num_concurrent_tasks"
+       # type: int
+       # inputBinding:
+       # prefix: "--num_concurrent_tasks"
+	source: num_concurrent_tasks
     out:
       - bg_sub_tiles
       - bg_sub_config
diff --git a/steps/run_cytokit.cwl b/steps/run_cytokit.cwl
index ebf5e52..a2bcc9c 100644
--- a/steps/run_cytokit.cwl
+++ b/steps/run_cytokit.cwl
@@ -7,7 +7,7 @@ baseCommand: ["sh", "run_cytokit.sh"]
 requirements:
   DockerRequirement:
     dockerPull: hubmap/cytokit:latest
-  DockerGpuRequirement: {}
+ #DockerGpuRequirement: {}
 
   InitialWorkDirRequirement:
     listing: