Datasets missing `assay_type` and `assay_category`

[icaoberg]

The following categories are missing values in the assay_type and assay_category fields.

Comment these fields are missing on the datasets missing the metadata field as well. So may be these are meant to be populated during ingestion.

+------+-----------------+-----------+----------------+--------------+-------------+--------------+------------------+
|      | hubmap_id       | status    | is_protected   | is_primary   | data_type   |   assay_type |   assay_category |
+======+=================+===========+================+==============+=============+==============+==================+
|  645 | HBM347.RFGL.437 | Published | True           | True         | SNAREseq    |          nan |              nan |
+------+-----------------+-----------+----------------+--------------+-------------+--------------+------------------+
| 1436 | HBM773.WCXC.264 | Published | True           | True         | snRNAseq    |          nan |              nan |
+------+-----------------+-----------+----------------+--------------+-------------+--------------+------------------+

[j-uranic]

@icaoberg It looks like this would also be impacted by the data ingest not currently running (if it needs to be added during ingest). If there is a way to manually update this that anyone can share with me, I can look into it.

Are these the only datasets you've found where this error is occurring? I am wondering if it is a one-off problem that might have its own unique cause, or if there is something that needs to added to the ingest to enforce that these fields are not empty?

[icaoberg]

@icaoberg agree. These datasets need to be ingested again. I don't know the procedure but this process needs to be driven by @sunset666 or @bhonick. However this re-ingestion/processing needs to happen ASAP.