Hello Everyone!
Could someone please tell me why I'm getting this error?
bash 1.vcf2pro.sh
State of the environmental variables is:
Reading and loading the VCF file, starting time is: 2025-06-20 02:18:46.941376223 UTC
thread 'main' panicked at 'called Result::unwrap() on an Err value: " reading the file failed: \n Could not extract any records from the provided file!! \n, formatting the string failed"', src/main.rs:13:83
note: run with RUST_BACKTRACE=1 environment variable to display a backtrace
below is my script that I'm running:
vcf2prot -f 24:48805XXX-48834XXX.vcf -r SMAD7_X2.fa -v -g st -o results
SMAD7_X2.fa is the full genomic fasta sequence of my gene (introns+exons+UTRs)
Am I running script with wrong reference file? Should i use only reference_cds.fa for my gene in this script?
Will be grateful for your response.
Thanks in advance!
Hello Everyone!
Could someone please tell me why I'm getting this error?
bash 1.vcf2pro.sh
State of the environmental variables is:
Reading and loading the VCF file, starting time is: 2025-06-20 02:18:46.941376223 UTC
thread 'main' panicked at 'called
Result::unwrap()on anErrvalue: " reading the file failed: \n Could not extract any records from the provided file!! \n, formatting the string failed"', src/main.rs:13:83note: run with
RUST_BACKTRACE=1environment variable to display a backtracebelow is my script that I'm running:
vcf2prot -f 24:48805XXX-48834XXX.vcf -r SMAD7_X2.fa -v -g st -o results
SMAD7_X2.fa is the full genomic fasta sequence of my gene (introns+exons+UTRs)
Am I running script with wrong reference file? Should i use only reference_cds.fa for my gene in this script?
Will be grateful for your response.
Thanks in advance!