Realfreq doesn't stop after buttery-eel basecaller crashes

[imsuneth]

Problem

$subject

Suspected reason

Currently, buttey-eel basecaller doesn't return when it crashes due to out of memory leaving the pipeline.sh not erroring out.

Workaround:

Adjust following three options to limit memory usage for buttery-eel basecaller within pipeline.sh

• --procs PROCS Number of worker processes to use processing reads (default: 4)
• --slow5_batchsize SLOW5_BATCHSIZE
  Number of reads to process at a time reading slow5 (default: 4000)
• --max_read_queue_size MAX_READ_QUEUE_SIZE
  Number of reads to process at a time reading slow5 (default: 20000)