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added HISAT2 to DE
Updated Differential Expression (markdown)
Markdown expects \t but got a bunch of spaces (code blocks had indented code, which was likely unintentional)
fix all links to cufflink manual pages
Add cuffquant for STAR option.
whitespace
HBR is mix2 not mix1
Use the new cuffquant tool.
add flowchart
Remove redundant header syntax
Initial revision for Module2, Module3 and Module4