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fixed typo
added HISAT2 to expression and made fix to postalignment-qc
fixed ftp to http urls
Updated Expression (markdown)
fix example urls to use new dns service
fix all links to cufflink manual pages
update example urls to account for change in apache server root
updated urls from dyndns.org to entrydns.org
update cshl AWS URLs from cbw to cshl
Add the ERCC spike-in expression figure.
Add strand-specific params.
Whitespace
No nead to namesort of convert to SAM. Also add strand specific params.