Include more file output options while running GALES

[nsuvarnaiari]

Some file output options are very useful. These options can be included while running GALES.

1. Gene nucleotide (including ncRNA gene sequences) and protein fasta files.
2. Tab-delimited annotation file including ncRNAs with following tabs,
   internal locus id
   molecule id (contig number)
   product_name
   gene_symbol
   ec_number
   go_terms
   OPTIONAL product_name_source (the source from where the product name is derived)
   start coordinate
   stop coordinate
   strand