Is GALES compatible with a conda python3 virtualenv?
Starting pipeline. If this is your first time running this pipeline there will be some latency as the necessary Docker images are downloaded. This is a one-time cost.
Running command: cwl-runner --outdir /tmp/demo /tmp/demo/prok-annotation-cheetah.cwl /tmp/demo/prok-annotation-cheetah.json
Traceback (most recent call last):
File "/Users/cox/miniconda3/bin/cwl-runner", line 5, in
from cwltool.main import main
File "/Users/cox/miniconda3/lib/python3.7/site-packages/cwltool/main.py", line 34, in
from ruamel import yaml
ModuleNotFoundError: No module named 'ruamel'
ERROR: Return code 1 when running the following command: cwl-runner --outdir /tmp/demo /tmp/demo/prok-annotation-cheetah.cwl /tmp/demo/prok-annotation-cheetah.json
Is GALES compatible with a conda python3 virtualenv?
Starting pipeline. If this is your first time running this pipeline there will be some latency as the necessary Docker images are downloaded. This is a one-time cost.
Running command: cwl-runner --outdir /tmp/demo /tmp/demo/prok-annotation-cheetah.cwl /tmp/demo/prok-annotation-cheetah.json
Traceback (most recent call last):
File "/Users/cox/miniconda3/bin/cwl-runner", line 5, in
from cwltool.main import main
File "/Users/cox/miniconda3/lib/python3.7/site-packages/cwltool/main.py", line 34, in
from ruamel import yaml
ModuleNotFoundError: No module named 'ruamel'
ERROR: Return code 1 when running the following command: cwl-runner --outdir /tmp/demo /tmp/demo/prok-annotation-cheetah.cwl /tmp/demo/prok-annotation-cheetah.json