From 5c8631e142d1999339811991e035c7db83130dce Mon Sep 17 00:00:00 2001
From: Fede Raimondo <f.raimondo@fz-juelich.de>
Date: Fri, 29 May 2026 13:10:48 +0300
Subject: [PATCH 1/8] Use polyversion + uv to build docs

---
 .github/workflows/docs-preview.yml            |  15 +-
 .github/workflows/docs.yml                    |  17 +-
 docs/Makefile                                 |  36 +-
 docs/_static/css/version_selector.css         | 126 ++++
 docs/_templates/versions.html                 |  36 +-
 docs/conf.py                                  | 116 ++--
 docs/poly.py                                  | 613 ++++++++++++++++++
 docs/poly_files/patches/version_banner.html   |  24 +
 .../patches/version_banner_rtd.html           |   5 +
 docs/poly_files/patches/versions.html         |  35 +
 docs/poly_files/patches/versions_rtd.html     |  27 +
 docs/poly_files/templates/index.html          |  12 +
 pyproject.toml                                |  17 +-
 uv.lock                                       | 382 ++---------
 14 files changed, 1037 insertions(+), 424 deletions(-)
 create mode 100644 docs/_static/css/version_selector.css
 create mode 100644 docs/poly.py
 create mode 100644 docs/poly_files/patches/version_banner.html
 create mode 100644 docs/poly_files/patches/version_banner_rtd.html
 create mode 100644 docs/poly_files/patches/versions.html
 create mode 100644 docs/poly_files/patches/versions_rtd.html
 create mode 100644 docs/poly_files/templates/index.html

diff --git a/.github/workflows/docs-preview.yml b/.github/workflows/docs-preview.yml
index b069159fc..223e2aeb2 100644
--- a/.github/workflows/docs-preview.yml
+++ b/.github/workflows/docs-preview.yml
@@ -24,15 +24,20 @@ jobs:
         fetch-depth: 0
     - uses: actions/setup-python@v6
       with:
-          python-version: "3.x"
+        python-version-file: "pyproject.toml"
+
+    - name: Install uv
+      uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0
+
     - name: Install Python dependencies
       run: |
-        python -m pip install --upgrade pip setuptools wheel
-        python -m pip install -e .[docs,viz]
+        uv sync --locked --extra docs
+
     - name: Test build docs
       run: |
-        BUILDDIR=_build/main make -C docs/ local
+        make -C docs/ local
+
     - uses: rossjrw/pr-preview-action@v1
       with:
-        source-dir: docs/_build/main
+        source-dir: docs/_build/dev
       if: github.event_name == 'pull_request'
diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
index 24ea6ea05..e99a89ec1 100644
--- a/.github/workflows/docs.yml
+++ b/.github/workflows/docs.yml
@@ -18,13 +18,19 @@ jobs:
       with:
         # require all of history to see all tagged versions' docs
         fetch-depth: 0
-    - uses: actions/setup-python@v6
+
+    - name: Set up Python
+      uses: actions/setup-python@v6
       with:
-        python-version: "3.x"
+        python-version-file: "pyproject.toml"
+
+    - name: Install uv
+      uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0
+
     - name: Install Python dependencies
       run: |
-        python -m pip install --upgrade pip setuptools wheel
-        python -m pip install -e .[docs,viz]
+        uv sync --locked --extra docs
+
     - name: Checkout gh-pages
       # As we already did a deploy of gh-pages above, it is guaranteed to be there
       # so check it out so we can selectively build docs below
@@ -32,8 +38,9 @@ jobs:
       with:
           ref: gh-pages
           path: docs/_build
+
     - name: Build docs
-      # Use the args we normally pass to sphinx-build, but run sphinx-multiversion
+      # Use the args we normally pass to sphinx-build, but run sphinx-polyversion
       run: |
         make -C docs/ html
         touch docs/_build/.nojekyll
diff --git a/docs/Makefile b/docs/Makefile
index 2f258f3d5..93696772c 100644
--- a/docs/Makefile
+++ b/docs/Makefile
@@ -3,48 +3,40 @@
 
 # You can set these variables from the command line, and also
 # from the environment for the first two.
-SPHINXOPTS    ?="-W" "-E"
-SPHINXBUILD   ?= sphinx-multiversion
+SPHINXBUILD   = sphinx-build
+POLYBUILD     = sphinx-polyversion
 SOURCEDIR     = .
-BUILDDIR      ?= _build
+BUILDDIR      ?= docs/_build
+SPHINXOPTS    ?= -E -v
+
 
 # Put it first so that "make" without argument is like "make help".
 help:
-	@$(SPHINXBUILD) --help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+	@$(SPHINXBUILD) --help "$(SOURCEDIR)" "$(BUILDDIR)" $(O)
 
-.PHONY: help Makefile clean local news _build_local _html
+.PHONY: help Makefile clean cleanall local _build_local _html
 
 clean:
-	rm -rf $(BUILDDIR)/*
+	rm -rf $(BUILDDIR)/main
 	rm -rf auto_examples/
 	rm -rf api/generated/
 
+cleanall: clean
+	rm -rf $(BUILDDIR)/*
+
 # For local build
 local:
 	make _build_local; STATUS=$$?; exit $$STATUS
 
-## First build will create warnings for auto_examples. Second one will work correctly.
 _build_local:
-	sphinx-build "$(SOURCEDIR)" "$(BUILDDIR)" "-E" $(O)
-	sphinx-build "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+# 	$(POLYBUILD) ./poly.py -vv -l -o NO_PATCH=True -o OUTPUT_DIR="$(BUILDDIR)" -o SOURCE_DIR="$(SOURCEDIR)" -o TAG_REGEX="^$$"
+	$(SPHINXBUILD) "$(SOURCEDIR)" _build/dev $(SPHINXOPTS) $(O)
 
 html:
 	make _html; STATUS=$$?; exit $$STATUS
 
-
-## Build only tags that are not already built, and ignore dev tags. This is useful for CI to avoid building all tags on every push, but still build new tags when they are created.
 _html:
-	@regex=$$( \
-		for tag in $$(git tag -l); do \
-			if [ ! -d "$(BUILDDIR)/$$tag" ]; then \
-				echo "$$tag"; \
-			fi; \
-		done | \
-		grep -v dev | \
-		paste -sd'|' - \
-	); \
-	echo "$$regex"; \
-	$(SPHINXBUILD) "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) -D "smv_tag_whitelist='^($$regex)$$'"  $(O)
+	$(POLYBUILD) ./poly.py -vv -o OUTPUT_DIR="$(BUILDDIR)" -o SOURCE_DIR="$(SOURCEDIR)"
 
 # Catch-all target: route all unknown targets to Sphinx using the new
 # "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
diff --git a/docs/_static/css/version_selector.css b/docs/_static/css/version_selector.css
new file mode 100644
index 000000000..60fccb7af
--- /dev/null
+++ b/docs/_static/css/version_selector.css
@@ -0,0 +1,126 @@
+/* Furo-native version selector styles.
+   Uses furo CSS variables for full light/dark mode compatibility. */
+
+/* ── Sidebar version selector ────────────────────────────────────────────── */
+
+#version-selector {
+    border-top: 1px solid var(--color-sidebar-search-border);
+    padding-top: calc(var(--sidebar-item-spacing-vertical) / 2);
+}
+
+/* Remove default browser <details> marker */
+.version-details > summary {
+    list-style: none;
+}
+.version-details > summary::-webkit-details-marker {
+    display: none;
+}
+
+/* Summary row: looks like a furo sidebar caption */
+.version-summary {
+    cursor: pointer;
+    display: flex;
+    align-items: center;
+    gap: 0.4em;
+    padding: var(--sidebar-item-spacing-vertical)
+        var(--sidebar-item-spacing-horizontal);
+    font-size: var(--font-size--small--2);
+    font-weight: bold;
+    text-transform: uppercase;
+    letter-spacing: 1px;
+    color: var(--color-sidebar-caption-text);
+    user-select: none;
+}
+
+.version-summary:hover {
+    background-color: var(--color-sidebar-item-background--hover);
+}
+
+/* Chevron: points right when closed, down when open */
+.version-summary::after {
+    content: "▶";
+    font-size: 0.6em;
+    margin-left: auto;
+    transition: transform 0.15s ease;
+    color: var(--color-sidebar-caption-text);
+}
+
+.version-details[open] > .version-summary::after {
+    transform: rotate(90deg);
+}
+
+/* Colored status dot */
+.version-status-dot {
+    width: 8px;
+    height: 8px;
+    border-radius: 50%;
+    display: inline-block;
+    flex-shrink: 0;
+}
+
+.version-status-dot--latest { background-color: #28a745; }
+.version-status-dot--old    { background-color: #dc3545; }
+.version-status-dot--dev    { background-color: #e67e00; }
+
+/* Version list */
+.version-details ul {
+    margin: 0;
+    padding: 0;
+    list-style: none;
+}
+
+.version-details .toctree-l1 > a {
+    display: block;
+    padding: var(--sidebar-item-spacing-vertical)
+        var(--sidebar-item-spacing-horizontal);
+    color: var(--color-sidebar-link-text);
+    font-size: var(--sidebar-item-font-size);
+    text-decoration: none;
+}
+
+.version-details .toctree-l1 > a:hover {
+    background-color: var(--color-sidebar-item-background--hover);
+    color: var(--color-sidebar-link-text--top-level);
+}
+
+.version-details .toctree-l1.current > a {
+    background-color: var(--color-sidebar-item-background--current, transparent);
+    color: var(--color-sidebar-link-text--top-level);
+    font-weight: bold;
+}
+
+.version-details .toctree-l1 > a em {
+    font-size: 0.85em;
+    opacity: 0.75;
+}
+
+/* ── Version banner (toc-drawer / right sidebar) ─────────────────────────── */
+
+.version-banner {
+    padding: 0.6rem 0.75rem;
+    margin: 0.75rem 0.5rem 0;
+    border-radius: 0.2rem;
+    border-left: 3px solid;
+    font-size: var(--font-size--small--2);
+    line-height: 1.4;
+}
+
+.version-banner a {
+    font-weight: bold;
+    color: inherit;
+}
+
+.version-banner--latest {
+    background-color: rgba(40, 167, 69, 0.12);
+    border-left-color: #28a745;
+}
+
+.version-banner--old {
+    background-color: rgba(220, 53, 69, 0.12);
+    border-left-color: #dc3545;
+}
+
+.version-banner--dev {
+    background-color: rgba(230, 126, 0, 0.12);
+    border-left-color: #e67e00;
+}
diff --git a/docs/_templates/versions.html b/docs/_templates/versions.html
index 31a125789..0d447d45f 100644
--- a/docs/_templates/versions.html
+++ b/docs/_templates/versions.html
@@ -1,27 +1,11 @@
-{%- if current_version %}
-<div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
-  <span class="rst-current-version" data-toggle="rst-current-version">
-    <span class="fa fa-book"> Other Versions</span>
-    v: {{ current_version.name }}
-    <span class="fa fa-caret-down"></span>
-  </span>
-  <div class="rst-other-versions">
-    {%- if versions.tags %}
-    <dl>
-      <dt>Tags</dt>
-      {%- for item in versions.tags %}
-      <dd><a href="{{ item.url }}">{{ item.name }}</a></dd>
-      {%- endfor %}
-    </dl>
-    {%- endif %}
-    {%- if versions.branches %}
-    <dl>
-      <dt>Branches</dt>
-      {%- for item in versions.branches %}
-      <dd><a href="{{ item.url }}">{{ item.name }}</a></dd>
-      {%- endfor %}
-    </dl>
-    {%- endif %}
-  </div>
+{# Furo-native version selector.
+   This placeholder is rendered by Sphinx at build time.
+   poly.py replaces it with the full multi-version list when patching. #}
+<div id="version-selector" class="sidebar-tree version-selector">
+  <details class="version-details" open>
+    <summary class="version-summary">
+      <span class="version-status-dot version-status-dot--latest"></span>
+      <span class="caption-text">Version</span>
+    </summary>
+  </details>
 </div>
-{%- endif %}
diff --git a/docs/conf.py b/docs/conf.py
index ff9433838..ce45c6f2b 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -7,30 +7,61 @@
 # https://www.sphinx-doc.org/en/master/usage/configuration.html
 
 import datetime
-from functools import partial
-from pathlib import Path
+import os
 import sys
-
-from setuptools_scm import get_version
-
 import types
+from pathlib import Path
 from typing import TypeAliasType
+
+from setuptools_scm import get_version
 from sphinx_autodoc_typehints import format_annotation
+from sphinx_polyversion.api import load
+from sphinx_polyversion.git import GitRefType
+
+
+if os.getenv("POLYVERSION_DATA") is None:
+    # If POLYVERSION_DATA is not set, we are likely building the docs locally.
+    # In this case, we can use setuptools_scm to get the version information.
+    release = get_version(root=Path(__file__).parents[1].resolve())
+else:
+    load(globals())
+    # This adds the following to the global scope
+    # html_context = {
+    #     "revisions": [GitRef('main', ...), GitRef('v6.8.9', ...), ...],
+    #     "current": GitRef('v1.4.6', ...),
+    # }
+
+    # process the loaded version information as you wish
+    html_context = globals().get("html_context", {})
+
+    tag_revisions = [
+        rev
+        for rev in html_context["revisions"]
+        if rev.type_ == GitRefType.TAG and rev.name.startswith("v")
+    ]
 
-# Check if sphinx-multiversion is installed
-use_multiversion = False
-try:
-    import sphinx_multiversion  # noqa: F401
+    latest = sorted(tag_revisions, key=lambda x: x.name)[
+        -1
+    ]  # latest by version
 
-    use_multiversion = True
-except ImportError:
-    pass
+    if (
+        html_context["currrent"].type_ == GitRefType.BRANCH
+        and html_context["current"].name == "main"
+    ):
+        major, minor, revision = latest.name.split("v")[-1].split(
+            "."
+        )  # get version number from tag name
+        next_dev_version = f"{major}.{minor}.{int(revision) + 1}.dev0"
+        release = next_dev_version
+    else:
+        release = html_context["current"].name
 
+version = release
 
 # -- Path setup --------------------------------------------------------------
 
 PROJECT_ROOT_DIR = Path(__file__).parents[1].resolve()
-get_scm_version = partial(get_version, root=PROJECT_ROOT_DIR)
+# get_scm_version = partial(get_version, root=PROJECT_ROOT_DIR)
 
 # -- Project information -----------------------------------------------------
 
@@ -44,11 +75,6 @@
 author = f"{project} Contributors"
 copyright = f"{datetime.date.today().year}, {author}"
 
-# The version along with dev tag
-release = get_scm_version(
-    version_scheme="guess-next-dev",
-    local_scheme="no-local-version",
-)
 
 # -- General configuration ---------------------------------------------------
 
@@ -72,12 +98,6 @@
     "sphinx_autodoc_typehints",  # automatically document type hints
 ]
 
-if use_multiversion:
-    print("using sphinx-multiversion for documentation")
-    extensions.append("sphinx_multiversion")
-else:
-    print("sphinx-multiversion not found, building documentation without it")
-
 # Add any paths that contain templates here, relative to this directory.
 templates_path = [
     "_templates",
@@ -111,9 +131,20 @@
     ("py:class", "sklearn.metrics._scorer.*"),
 ]
 
-to_ignore = ["array-like", "shape", "optional", "or", "the", "options",
-             "n_samples", "default=.*", "n_features", "n_outputs", "True",
-             "False"]
+to_ignore = [
+    "array-like",
+    "shape",
+    "optional",
+    "or",
+    "the",
+    "options",
+    "n_samples",
+    "default=.*",
+    "n_features",
+    "n_outputs",
+    "True",
+    "False",
+]
 
 for i in to_ignore:
     nitpick_ignore_regex.append(("py:class", i))
@@ -134,6 +165,7 @@
 # or fully qualified paths (eg. https://...)
 html_css_files = [
     "css/custom.css",
+    "css/version_selector.css",
 ]
 
 html_js_files = [
@@ -168,15 +200,15 @@
     "ColumnTypes": "julearn.base.column_types.ColumnTypes",
     "Pipeline": "sklearn.pipeline.Pipeline",
     "RandomState": "numpy.random.RandomState",
-#     "ColumnTypesLike": "julearn.utils.typing.ColumnTypesLike",
-#     "DataLike": "julearn.utils.typing.DataLike",
-#     "ScorerLike": "julearn.utils.typing.ScorerLike",
-#     "EstimatorLike": "julearn.utils.typing.EstimatorLike",
-#     "ModelLike": "julearn.utils.typing.ModelLike",
-#     "TransformerLike": "julearn.utils.typing.TransformerLike",
-#     "JuModelLike": "julearn.utils.typing.JuModelLike",
-#     "JuTransformerLike": "julearn.utils.typing.JuTransformerLike",
-#     "CVLike": "julearn.utils.typing.CVLike",
+    #     "ColumnTypesLike": "julearn.utils.typing.ColumnTypesLike",
+    #     "DataLike": "julearn.utils.typing.DataLike",
+    #     "ScorerLike": "julearn.utils.typing.ScorerLike",
+    #     "EstimatorLike": "julearn.utils.typing.EstimatorLike",
+    #     "ModelLike": "julearn.utils.typing.ModelLike",
+    #     "TransformerLike": "julearn.utils.typing.TransformerLike",
+    #     "JuModelLike": "julearn.utils.typing.JuModelLike",
+    #     "JuTransformerLike": "julearn.utils.typing.JuTransformerLike",
+    #     "CVLike": "julearn.utils.typing.CVLike",
 }
 
 
@@ -288,12 +320,6 @@
     "download_all_examples": False,
 }
 
-# -- sphinx-multiversion configuration ---------------------------------------
-
-smv_rebuild_tags = False
-smv_tag_whitelist = r"^v\d+\.\d+.\d+$"
-smv_branch_whitelist = r"main"
-smv_released_pattern = r"^tags/v.*$"
 
 # -- sphinxcontrib-towncrier configuration -----------------------------------
 
@@ -301,7 +327,7 @@
 towncrier_draft_include_empty = True
 towncrier_draft_working_directory = PROJECT_ROOT_DIR
 
-# -- sphinx_autodoc_typehints configuration ---------------------------------------
+# -- sphinx_autodoc_typehints configuration ----------------------------------
 always_use_bars_union = True
 simplify_optional_unions = True
 typehints_defaults = "comma"
@@ -315,9 +341,9 @@
 # instead of as a separate block
 typehints_use_rtype = False
 
+
 def _get_canonical_type_alias_name(annotation: TypeAliasType) -> str:
-    """
-    Get canonical public qualified name for a TypeAliasType.
+    """Get canonical public qualified name for a TypeAliasType.
 
     For types defined in private modules (e.g. ``numpy._typing.ArrayLike``),
     search ``sys.modules`` for a public re-export
diff --git a/docs/poly.py b/docs/poly.py
new file mode 100644
index 000000000..816c287fb
--- /dev/null
+++ b/docs/poly.py
@@ -0,0 +1,613 @@
+"""Configure sphinx-polyversion for building documentation."""
+
+import asyncio
+import os
+import re
+import subprocess
+import sys
+from pathlib import Path
+
+from bs4 import BeautifulSoup
+from jinja2 import Environment, FileSystemLoader
+from sphinx_polyversion import apply_overrides, logger
+from sphinx_polyversion.git import (
+    Git,
+    GitRefType,
+    file_predicate,
+    refs_by_type,
+)
+from sphinx_polyversion.pyvenv import Pip
+from sphinx_polyversion.setuptools_scm import SetuptoolsScmDriver
+from sphinx_polyversion.sphinx import SphinxBuilder
+
+
+#: Regex matching the branches to build docs for
+BRANCH_REGEX = r"main"
+
+#: Regex matching the tags to build docs for
+TAG_REGEX = r"v\d+\.\d+\.\d+"
+
+#: Output dir relative to project root
+#: !!! This name has to be choosen !!!
+OUTPUT_DIR = "docs/_build"
+
+#: Source directory relative to project root
+SOURCE_DIR = "./"
+
+#: Arguments to pass to `pip install`
+PIP_ARGS = "-e .[docs,viz]"
+
+#: Arguments to pass to `sphinx-build`
+SPHINX_ARGS = "-E -v"
+
+#: Whether to build using only local files and mock data
+MOCK = False
+
+#: Whether to run the builds in sequence or in parallel
+SEQUENTIAL = False
+
+#: Whether to build all versions or only the missing ones (if False, only
+# versions that are not already built will be built)
+BUILD_ALL = False
+
+# Whether to skip the HTML patching step (for doc development purposes,
+# since patching is slow)
+NO_PATCH = False
+
+# Load overrides read from commandline to global scope
+apply_overrides(globals())
+
+# Determine repository root directory
+root = Git.root(Path(__file__).parent)
+
+logger.info(f"Building documentation for repository at {root}")
+
+# Setup driver and run it
+docs_src = Path(SOURCE_DIR) / "docs"  # convert from string
+out_dir = root / OUTPUT_DIR
+
+logger.info(f"Docs Source directory: {docs_src}")
+logger.info(f"Output directory: {out_dir}")
+
+# Builders by version:
+BUILDER = {
+    None: SphinxBuilder(docs_src, args=SPHINX_ARGS.split()),  # default
+}
+
+
+class PipSetupToolsSCM(Pip):
+    """Custom pip environment that sets the version for setuptools_scm."""
+
+    # Somehow, setuptools_scm doesn't work when we pretend the version
+    # specifically for julearn, so we need to override the version for all
+    # environments. This is a bit hacky, but it works.
+    def apply_overrides(self, env: dict[str, str]) -> dict[str, str]:
+        """Apply overrides to the environment variables.
+
+        Args:
+            env: The environment variables to apply the overrides to.
+
+        Returns:
+            The environment variables with the overrides applied.
+
+        """
+        self.env["SETUPTOOLS_SCM_PRETEND_VERSION"] = self.env[
+            "SETUPTOOLS_SCM_PRETEND_VERSION_FOR_JULEARN"
+        ]
+        logger.info(f"Applying overrides: {self.env}")
+        return super().apply_overrides(env)
+
+
+# Custom UV environment creator
+class NewVenvUVEnvCreator:
+    """Python environment using uv as the package manager."""
+
+    def __init__(
+        self,
+        python_version: str | None = None,
+    ):
+        """Initialize UV environment provider.
+
+        Args:
+            args: Arguments to pass to `uv pip install`
+            env: Environment variables to set
+            python_version: Python version to use. If none, use the default.
+
+        """
+        self.python_version = python_version
+
+    async def __call__(self, path: Path) -> None:
+        """Create the virtual python environment.
+
+        Args:
+            path: Path to the virtual environment directory
+
+        """
+
+        # Create virtual environment
+        uvvenvpath = path.parent / ".uvenv"
+        subprocess.check_call([sys.executable, "-m", "venv", str(uvvenvpath)])
+
+        # Get the pip path inside the venv
+        if os.name == "nt":  # Windows
+            pip_path = uvvenvpath / "Scripts" / "pip"
+            python_path = uvvenvpath / "Scripts" / "python"
+        else:  # Unix/macOS
+            pip_path = uvvenvpath / "bin" / "pip"
+            python_path = uvvenvpath / "bin" / "python"
+
+        # Install uv in the virtual environment
+        subprocess.check_call([str(pip_path), "install", "uv"])
+
+        # Get the uv path inside the venv
+        if os.name == "nt":  # Windows
+            uv_path = uvvenvpath / "Scripts" / "uv"
+        else:  # Unix/macOS
+            uv_path = uvvenvpath / "bin" / "uv"
+
+        # now use uv to create the environment with the correct python
+        cmd = [str(uv_path), "venv", str(path)]
+        if self.python_version is not None:
+            cmd += ["--python", self.python_version]
+        subprocess.check_call(cmd)
+
+        if os.name == "nt":  # Windows
+            python_path = path / "Scripts" / "python"
+        else:  # Unix/macOS
+            python_path = path / "bin" / "python"
+
+        # Now install pip in the environment using uv
+        cmd = [
+            str(uv_path),
+            "pip",
+            "install",
+            "--python",
+            str(python_path),
+            "pip",
+        ]
+        subprocess.check_call(cmd, cwd=path)
+
+
+ENVIRONMENT = {
+    None: PipSetupToolsSCM.factory(
+        venv=Path(".venv"),
+        args=PIP_ARGS.split(),
+        creator=NewVenvUVEnvCreator(),
+        temporary=True,
+    ),  # default
+    r"v0\.2\.\d+": PipSetupToolsSCM.factory(
+        venv=Path(".venv"),
+        args=(
+            "-e . -r docs-requirements.txt seaborn==0.11.1 numpy==1.19.3 "
+            "scikit-learn==0.23.2"
+        ).split(),
+        creator=NewVenvUVEnvCreator(python_version="3.8"),
+        temporary=True,
+    ),  # for older versions, install without docs extras
+    r"v0.2.5": PipSetupToolsSCM.factory(
+        venv=Path(".venv"),
+        args=(
+            "-e . -r docs-requirements.txt numpy==1.23.1 scikit-learn==1.0.2"
+        ).split(),
+        creator=NewVenvUVEnvCreator(python_version="3.8"),
+        temporary=True,
+    ),
+    r"v0.2.7": PipSetupToolsSCM.factory(
+        venv=Path(".venv"),
+        args=(
+            "-e . -r docs-requirements.txt numpy==1.23.5 scikit-learn==1.0.2"
+        ).split(),
+        creator=NewVenvUVEnvCreator(python_version="3.8"),
+        temporary=True,
+    ),
+    r"v0.3.0": PipSetupToolsSCM.factory(
+        venv=Path(".venv"),
+        args=(
+            "-e .[docs,viz] bokeh==3.1.0 panel==1.0.0b1 "
+            "param==1.12.0 scikit-learn==1.3.0"
+        ).split(),
+        creator=NewVenvUVEnvCreator(python_version="3.11"),
+        temporary=True,
+    ),
+    r"v0\.3\.\d+": PipSetupToolsSCM.factory(
+        venv=Path(".venv"),
+        args="-e .[docs,viz] panel==1.3.0 param==2.0.0".split(),
+        creator=NewVenvUVEnvCreator(python_version="3.11"),
+        temporary=True,
+    ),
+    r"v0.3.5": PipSetupToolsSCM.factory(
+        venv=Path(".venv"),
+        args="-e .[docs,viz]".split(),
+        creator=NewVenvUVEnvCreator(python_version="3.11"),
+        temporary=True,
+    ),
+}
+
+template_dir = root / docs_src / "poly_files" / "templates"
+static_dir = root / docs_src / "poly_files" / "static"
+patches_dir = root / docs_src / "poly_files" / "patches"
+
+logger.info(f"Template directory: {template_dir}")
+logger.info(f"Static directory: {static_dir}")
+logger.info(f"Patches directory: {patches_dir}")
+
+
+def closest_tag(ref, tags) -> "str | None":
+    """Find the closest tag for a given version.
+
+    Args:
+        ref: Git reference
+        tags: Available tags in the environment mapping
+
+    Returns:
+        The closest tag name that should be used to select the environment
+
+    """
+
+    logger.info(f"Root: {root}, Ref: {ref}, Tags: {tags}")
+    this_tag = ref.name
+    out = None
+    if this_tag in tags:
+        logger.info(f"Exact match found for tag: {this_tag}")
+        out = this_tag
+    else:
+        for tag in tags:
+            logger.info(f"Checking if {this_tag} matches regexp {tag}...")
+            if tag is None:
+                continue
+            if re.match(re.compile(tag), this_tag):
+                logger.info(
+                    f"Prefix match found: {this_tag} starts with {tag}"
+                )
+                out = tag
+                break
+    logger.info(f"Closest tag: {out}")
+    return out
+
+
+# Now check which versions polyversion will run for
+vsc = Git(
+    branch_regex=BRANCH_REGEX,
+    tag_regex=TAG_REGEX,
+    predicate=file_predicate([docs_src]),  # exclude refs without source dir
+)
+
+refs = asyncio.run(vsc.retrieve(root))
+logger.info(f"Retrieved refs: {[ref.name for ref in refs]}")
+
+
+sorted_tags = sorted(
+    [ref for ref in refs if ref.type_ == GitRefType.TAG], key=lambda x: x.name
+)
+if len(sorted_tags) == 0:
+    logger.warning(
+        "No tags found matching the regex. Latest tag will be None."
+    )
+    latest_tag = None
+else:
+    latest_tag = sorted_tags[-1]
+    logger.info(f"Latest tag: {latest_tag.name}")
+
+if not BUILD_ALL:
+    to_build = []
+
+    for ref in refs:
+        if ref.type_ != GitRefType.TAG:
+            continue
+        if (out_dir / ref.name / "index.html").exists():
+            logger.info(
+                f"Documentation for {ref.name} already exists, skipping build."
+            )
+        else:
+            logger.info(
+                f"Documentation for {ref.name} does not exist, "
+                "adding to build list."
+            )
+            to_build.append(ref.name)
+
+    TAG_REGEX = (
+        "|".join(to_build) if to_build else r"^$"
+    )  # match nothing if empty
+    logger.info(f"Updated TAG_REGEX to: {TAG_REGEX}")
+
+
+#: Data passed to templates
+def data(driver, rev, env):
+    """Create a factory for data passed to templates.
+
+    Args:
+        driver: The driver instance running the build
+        rev: The current revision being built
+        env: The environment variables for the current build
+
+    """
+    revisions = driver.targets
+    branches, tags = refs_by_type(revisions)
+    latest = latest_tag
+    return {
+        "current": rev,
+        "tags": tags,
+        "branches": branches,
+        "revisions": revisions,
+        "latest": latest,
+    }
+
+
+def root_data(driver):
+    """Create a factory for root data passed to templates.
+
+    Args:
+        driver: The driver instance running the build
+
+    """
+    revisions = driver.builds
+    _, tags = refs_by_type(revisions)
+    latest = latest_tag
+    return {"revisions": revisions, "latest": latest}
+
+
+SetuptoolsScmDriver(
+    root,
+    out_dir,
+    vcs=Git(
+        branch_regex=BRANCH_REGEX,
+        tag_regex=TAG_REGEX,
+        predicate=file_predicate(
+            [docs_src]
+        ),  # exclude refs without source dir
+    ),
+    builder=BUILDER,
+    env=ENVIRONMENT,
+    selector=closest_tag,
+    template_dir=template_dir,
+    # static_dir=static_dir,
+    data_factory=data,
+    root_data_factory=root_data,
+).run()
+
+if NO_PATCH:
+    logger.info("NO_PATCH is set, skipping HTML patching.")
+    sys.exit(0)
+
+# Patch all HTML files with the new version of the selector that includes
+# the version selector. This is necessary because the selector is included as a
+# static file and is not rendered by jinja. We can do this by using
+# BeautifulSoup to parse the HTML files and replace the selector with the new
+# one that includes the version selector. This is a bit hacky, but it works.
+
+logger.info("Patching HTML files with new version selector...")
+
+# Check all of the built directories to find built versions
+built_versions = {
+    "branches": [],
+    "tags": [],
+}
+for ref in refs:
+    if (out_dir / ref.name).is_dir():
+        if ref.type_ == GitRefType.BRANCH:
+            built_versions["branches"].append(ref)
+        elif ref.type_ == GitRefType.TAG:
+            built_versions["tags"].append(ref)
+
+
+env = Environment(loader=FileSystemLoader(patches_dir))
+version_template = env.get_template("versions.html")
+versions_rtd_template = env.get_template("versions_rtd.html")
+version_banner_template = env.get_template("version_banner.html")
+version_banner_rtd_template = env.get_template("version_banner_rtd.html")
+new_css = root / docs_src / "_static" / "css" / "version_selector.css"
+
+
+def _version_root(html_file: Path, directory: Path) -> str:
+    """Return the relative prefix needed to reach the root from html_file.
+
+    For a file N levels deep inside `directory`, the versions root (parent of
+    `directory`) requires N+1 `../` steps.
+    """
+    depth = len(html_file.relative_to(directory).parts) - 1  # -1 for filename
+    return "../" * (depth + 1)
+
+
+def recursive_patch_html_files(directory: Path, html: str, div_selector: str):
+    """Recursively patch HTML files in a directory with the given HTML.
+
+    Args:
+        directory: The directory to recursively patch HTML files in.
+        html: The HTML string to insert into the files.
+        div_selector: The class name of the div to insert the HTML after if
+            the version selector div is not found.
+
+    """
+    for html_file in directory.glob("**/*.html"):
+        file_html = html.replace(
+            "{VERSIONROOT}", _version_root(html_file, directory)
+        )
+        with open(html_file, encoding="utf-8") as f:
+            soup = BeautifulSoup(f, "html.parser")
+        # Look for furo-native placeholder first, fall back to RTD-style div
+        selector_div = soup.find(
+            "div", {"id": "version-selector"}
+        ) or soup.find("div", {"class": "rst-versions"})
+        if selector_div is not None:
+            selector_div.replace_with(BeautifulSoup(file_html, "html.parser"))
+            with open(html_file, "w", encoding="utf-8") as f:
+                f.write(str(soup))
+        else:
+            # div was not there, so we need to append it after
+            nav_div = soup.find("div", {"class": div_selector})
+            if nav_div is not None:
+                nav_div.insert_after(BeautifulSoup(file_html, "html.parser"))
+                with open(html_file, "w", encoding="utf-8") as f:
+                    f.write(str(soup))
+            else:
+                logger.warning(
+                    "Could not find nav div to insert version selector for "
+                    f"{html_file}"
+                )
+
+
+def recursive_patch_html_files_add_banner(directory: Path, banner_html: str):
+    """Inject a version banner into the toc-drawer aside (furo theme).
+
+    If the aside has the ``no-toc`` class (meaning the TOC is hidden), that
+    class is removed so the drawer is visible and the banner is shown.
+    """
+    for html_file in directory.glob("**/*.html"):
+        file_banner = banner_html.replace(
+            "{VERSIONROOT}", _version_root(html_file, directory)
+        )
+        with open(html_file, encoding="utf-8") as f:
+            soup = BeautifulSoup(f, "html.parser")
+        toc_drawer = soup.find("aside", class_="toc-drawer")
+        if toc_drawer is not None:
+            # Activate the drawer if it was hidden (no-toc pages)
+            classes = toc_drawer.get("class", [])
+            if "no-toc" in classes:
+                classes.remove("no-toc")
+                toc_drawer["class"] = classes
+                # Also remove no-toc from the header and content toggle labels
+                for label in soup.find_all("label", class_="toc-overlay-icon"):
+                    label_classes = label.get("class", [])
+                    if "no-toc" in label_classes:
+                        label_classes.remove("no-toc")
+                        label["class"] = label_classes
+            # Remove any existing banner before inserting
+            existing = toc_drawer.find("div", {"class": "version-banner"})
+            if existing is not None:
+                existing.decompose()
+            toc_drawer.insert(0, BeautifulSoup(file_banner, "html.parser"))
+            with open(html_file, "w", encoding="utf-8") as f:
+                f.write(str(soup))
+        else:
+            logger.warning(
+                "Could not find toc-drawer to insert version banner for "
+                f"{html_file}"
+            )
+
+
+def recursive_patch_html_files_add_banner_rtd(
+    directory: Path, banner_html: str
+):
+    """Inject a version banner at the top of the RTD theme main content div."""
+    for html_file in directory.glob("**/*.html"):
+        file_banner = banner_html.replace(
+            "{VERSIONROOT}", _version_root(html_file, directory)
+        )
+        with open(html_file, encoding="utf-8") as f:
+            soup = BeautifulSoup(f, "html.parser")
+        main_div = soup.find("div", {"role": "main", "class": "document"})
+        if main_div is not None:
+            # Remove any existing banner before inserting
+            existing = main_div.find(
+                "div", style=lambda s: s and "border-left" in s
+            )
+            if existing is not None:
+                existing.decompose()
+            main_div.insert(0, BeautifulSoup(file_banner, "html.parser"))
+            with open(html_file, "w", encoding="utf-8") as f:
+                f.write(str(soup))
+        else:
+            logger.warning(
+                "Could not find RTD main div to insert version banner for "
+                f"{html_file}"
+            )
+
+
+def ensure_css_link(directory: Path):
+    """Ensure version_selector.css link is present."""
+    for html_file in directory.glob("**/*.html"):
+        depth = len(html_file.relative_to(directory).parts) - 1
+        css_href = "../" * depth + "_static/css/version_selector.css"
+        with open(html_file, encoding="utf-8") as f:
+            soup = BeautifulSoup(f, "html.parser")
+        head = soup.find("head")
+        if head is None:
+            continue
+        # Remove any stale version_selector link (wrong depth) before adding
+        # the correct one
+        for old_link in soup.find_all(
+            "link", href=lambda h: h and "version_selector.css" in h
+        ):
+            old_link.decompose()
+        new_link = soup.new_tag("link", rel="stylesheet", href=css_href)
+        head.append(new_link)
+        with open(html_file, "w", encoding="utf-8") as f:
+            f.write(str(soup))
+
+
+for built_dir in out_dir.iterdir():
+    if built_dir.is_dir():
+        if built_dir.name.startswith("v"):
+            logger.info(f"Patching built version directory: {built_dir.name}")
+            current_version = next(
+                [
+                    tag
+                    for tag in built_versions["tags"]
+                    if tag.name == built_dir.name
+                ]
+            )
+            if int(built_dir.name.split(".")[1]) < 3:
+                # Old read_the_docs template
+                version_rtd_html = versions_rtd_template.render(
+                    versions=built_versions,
+                    current_version=current_version,
+                )
+                banner_rtd_html = version_banner_rtd_template.render(
+                    current_version=current_version,
+                    latest=latest_tag,
+                )
+                recursive_patch_html_files(
+                    built_dir, version_rtd_html, "wy-grid-for-nav"
+                )
+                recursive_patch_html_files_add_banner_rtd(
+                    built_dir, banner_rtd_html
+                )
+            else:
+                version_html = version_template.render(
+                    versions=built_versions,
+                    current_version=current_version,
+                    latest=latest_tag,
+                )
+                banner_html = version_banner_template.render(
+                    current_version=current_version,
+                    latest=latest_tag,
+                )
+                recursive_patch_html_files(
+                    built_dir, version_html, "sidebar-tree"
+                )
+                recursive_patch_html_files_add_banner(built_dir, banner_html)
+
+                # Copy CSS and ensure link is present for pre-existing builds
+                static_dir = built_dir / "_static" / "css"
+                static_dir.mkdir(parents=True, exist_ok=True)
+                with open(new_css, encoding="utf-8") as f:
+                    new_css_content = f.read()
+                with open(
+                    static_dir / "version_selector.css", "w", encoding="utf-8"
+                ) as f:
+                    f.write(new_css_content)
+                ensure_css_link(built_dir)
+
+        elif built_dir.name == "main":
+            version_html = version_template.render(
+                versions=built_versions,
+                current_version=None,
+                latest=latest_tag,
+            )
+            banner_html = version_banner_template.render(
+                current_version=None,
+                latest=latest_tag,
+            )
+            recursive_patch_html_files(built_dir, version_html, "sidebar-tree")
+            recursive_patch_html_files_add_banner(built_dir, banner_html)
+
+            # Copy CSS and ensure link is present for all pages (correct depth)
+            static_dir = built_dir / "_static" / "css"
+            static_dir.mkdir(parents=True, exist_ok=True)
+            with open(new_css, encoding="utf-8") as f:
+                new_css_content = f.read()
+            with open(
+                static_dir / "version_selector.css", "w", encoding="utf-8"
+            ) as f:
+                f.write(new_css_content)
+            ensure_css_link(built_dir)
diff --git a/docs/poly_files/patches/version_banner.html b/docs/poly_files/patches/version_banner.html
new file mode 100644
index 000000000..947c7d5c1
--- /dev/null
+++ b/docs/poly_files/patches/version_banner.html
@@ -0,0 +1,24 @@
+{% if current_version %}
+  {% if current_version.name == latest.name %}
+    {% set status = "latest" %}
+  {% else %}
+    {% set status = "old" %}
+  {% endif %}
+{% else %}
+  {% set status = "dev" %}
+{% endif %}
+<div class="version-banner version-banner--{{ status }}" role="note">
+  {%- if status == "latest" %}
+  <strong>✓ Latest release</strong> — You are viewing the documentation for the latest
+  stable release of julearn ({{ current_version.name }}).
+  {%- elif status == "old" %}
+  <strong>⚠ Old version</strong> — You are viewing an old version of julearn
+  ({{ current_version.name }}). Switch to the
+  <a href="{VERSIONROOT}{{ latest.name }}/index.html">latest stable release ({{ latest.name }})</a>.
+  {%- else %}
+  <strong>🚧 Development version</strong> — You are viewing the development (unstable)
+  version of julearn. This may contain unreleased features or breaking changes.
+  For the latest stable release, see
+  <a href="{VERSIONROOT}{{ latest.name }}/index.html">{{ latest.name }}</a>.
+  {%- endif %}
+</div>
diff --git a/docs/poly_files/patches/version_banner_rtd.html b/docs/poly_files/patches/version_banner_rtd.html
new file mode 100644
index 000000000..c768b7554
--- /dev/null
+++ b/docs/poly_files/patches/version_banner_rtd.html
@@ -0,0 +1,5 @@
+<div role="note" style="padding:0.75rem 1rem;margin-bottom:1.5rem;background-color:#f8d7da;border-left:4px solid #dc3545;font-size:0.9em;line-height:1.5;">
+  <strong>⚠ Old version</strong> — You are viewing an old version of julearn
+  ({{ current_version.name }}). Switch to the
+  <a href="{VERSIONROOT}{{ latest.name }}/index.html">latest stable release ({{ latest.name }})</a>.
+</div>
diff --git a/docs/poly_files/patches/versions.html b/docs/poly_files/patches/versions.html
new file mode 100644
index 000000000..51848078e
--- /dev/null
+++ b/docs/poly_files/patches/versions.html
@@ -0,0 +1,35 @@
+{% if current_version %}
+  {% if current_version.name == latest.name %}
+    {% set status = "latest" %}
+  {% else %}
+    {% set status = "old" %}
+  {% endif %}
+{% else %}
+  {% set status = "dev" %}
+{% endif %}
+<div id="version-selector" class="sidebar-tree version-selector">
+  <details class="version-details"{% if status != "latest" %} open{% endif %}>
+    <summary class="version-summary">
+      <span class="version-status-dot version-status-dot--{{ status }}"></span>
+      <span class="caption-text">
+        {%- if current_version %}{{ current_version.name }}{% else %}main (dev){% endif -%}
+      </span>
+    </summary>
+    {% if versions %}
+    <ul>
+      {%- for item in versions.tags | sort(attribute='name') | reverse %}
+      <li class="toctree-l1{% if current_version and current_version.name == item.name %} current{% endif %}">
+        <a class="reference external" href="{VERSIONROOT}{{ item.name }}/index.html">
+          {{ item.name }}{% if latest and item.name == latest.name %} <em>(latest)</em>{% endif %}
+        </a>
+      </li>
+      {%- endfor %}
+      {%- if versions.branches %}
+      <li class="toctree-l1{% if not current_version %} current{% endif %}">
+        <a class="reference external" href="{VERSIONROOT}main/index.html">main (dev)</a>
+      </li>
+      {%- endif %}
+    </ul>
+    {% endif %}
+  </details>
+</div>
diff --git a/docs/poly_files/patches/versions_rtd.html b/docs/poly_files/patches/versions_rtd.html
new file mode 100644
index 000000000..3131c9bd3
--- /dev/null
+++ b/docs/poly_files/patches/versions_rtd.html
@@ -0,0 +1,27 @@
+{%- if current_version %}
+<div class="rst-versions" data-toggle="rst-versions" role="note" aria-label="versions">
+  <span class="rst-current-version" data-toggle="rst-current-version">
+    <span class="fa fa-book"> Other Versions</span>
+    v: {{ current_version.name }}
+    <span class="fa fa-caret-down"></span>
+  </span>
+  <div class="rst-other-versions">
+    {%- if versions.tags %}
+    <dl>
+      <dt>Tags</dt>
+      {%- for item in versions.tags %}
+      <dd><a href="{VERSIONROOT}{{ item.name }}/index.html">{{ item.name }}</a></dd>
+      {%- endfor %}
+    </dl>
+    {%- endif %}
+    {%- if versions.branches %}
+    <dl>
+      <dt>Branches</dt>
+      {%- for item in versions.branches %}
+      <dd><a href="{VERSIONROOT}{{ item.name }}/index.html">{{ item.name }}</a></dd>
+      {%- endfor %}
+    </dl>
+    {%- endif %}
+  </div>
+</div>
+{%- endif %}
diff --git a/docs/poly_files/templates/index.html b/docs/poly_files/templates/index.html
new file mode 100644
index 000000000..f34d02491
--- /dev/null
+++ b/docs/poly_files/templates/index.html
@@ -0,0 +1,12 @@
+<!doctype html>
+<html>
+    <head>
+        <title>Redirecting to latest version</title>
+        <meta charset="utf-8" />
+        <meta
+            http-equiv="refresh"
+            content="0; url=./{{ latest.name }}/index.html"
+        />
+        <link rel="canonical" href="./{{ latest.name }}/index.html" />
+    </head>
+</html>
diff --git a/pyproject.toml b/pyproject.toml
index bb7493339..2f7152aad 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -54,19 +54,16 @@ dev = [
     "ruff",
     "towncrier",
 ]
-docs = [
+sphinx = [
     "furo>=2025.7.19",
     "numpydoc>=1.9.0",
-    "optuna>=4.0.0,<5.0.0",
-    "optuna-integration>=4.0.0,<5.0.0",
-    "scikit-optimize>=0.10.2,<0.11.0",
     "seaborn>=0.13.0,<0.14.0",
     "setuptools-scm>=10.0.0,<11.0.0",
     "sphinx>=8.2.3,<10.0.0",
     "sphinx-copybutton>=0.5.2",
     "sphinx-gallery>=0.21.0",
-    "sphinx-multiversion>=0.2.4",
     "sphinx-autodoc-typehints>=3.6.1",
+    "sphinx-polyversion>=2.0.0",
     "sphinxcontrib-towncrier>=0.5.0a0",
     "towncrier>=25.8.0",
 ]
@@ -81,6 +78,10 @@ optuna = [
     "optuna>=4.0.0,<5.0.0",
     "optuna_integration>=4.0.0,<5.0.0",
 ]
+
+# Everything we need for docs is here
+docs = ["julearn[sphinx,viz,optuna,skopt]"]
+
 # Add all optional functional dependencies (skip deslib until its fixed)
 # This does not include dev/docs building dependencies
 all = ["julearn[viz,skopt,optuna]"]
@@ -109,7 +110,6 @@ builtin = "clear,rare,informal,names,usage,code"
 line-length = 79
 extend-exclude = [
     "__init__.py",
-    "docs",
     "examples",
     "external",
 ]
@@ -271,6 +271,9 @@ exclude_lines = [
 ]
 precision = 2
 
+[tool.uv.sources]
+sphinx-polyversion = { git = "https://github.com/real-yfprojects/sphinx-polyversion.git" }
+
 [dependency-groups]
 dev = [
     "ipython>=8.18.1",
@@ -292,7 +295,7 @@ docs = [
     "sphinx-autodoc-typehints>=3.6.1",
     "sphinx-copybutton>=0.5.2",
     "sphinx-gallery>=0.21.0",
-    "sphinx-multiversion>=0.2.4",
+    "sphinx-polyversion>=2.0.0",
     "sphinxcontrib-towncrier>=0.5.0a0",
     "towncrier>=25.8.0",
 ]
diff --git a/uv.lock b/uv.lock
index 572dbbefd..a99b0ef92 100644
--- a/uv.lock
+++ b/uv.lock
@@ -1,16 +1,13 @@
 version = 1
 revision = 3
-requires-python = ">=3.11"
+requires-python = ">=3.12"
 resolution-markers = [
     "python_full_version >= '3.14' and sys_platform == 'win32'",
     "python_full_version >= '3.14' and sys_platform == 'emscripten'",
     "python_full_version >= '3.14' and sys_platform != 'emscripten' and sys_platform != 'win32'",
-    "python_full_version >= '3.12' and python_full_version < '3.14' and sys_platform == 'win32'",
-    "python_full_version >= '3.12' and python_full_version < '3.14' and sys_platform == 'emscripten'",
-    "python_full_version >= '3.12' and python_full_version < '3.14' and sys_platform != 'emscripten' and sys_platform != 'win32'",
-    "python_full_version < '3.12' and sys_platform == 'win32'",
-    "python_full_version < '3.12' and sys_platform == 'emscripten'",
-    "python_full_version < '3.12' and sys_platform != 'emscripten' and sys_platform != 'win32'",
+    "python_full_version < '3.14' and sys_platform == 'win32'",
+    "python_full_version < '3.14' and sys_platform == 'emscripten'",
+    "python_full_version < '3.14' and sys_platform != 'emscripten' and sys_platform != 'win32'",
 ]
 
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 sdist = { url = "https://files.pythonhosted.org/packages/fc/2b/a964715e7f5295f77509e59309959f4125122d648f86b4fe7d70ca1d882c/sphinx-copybutton-0.5.2.tar.gz", hash = "sha256:4cf17c82fb9646d1bc9ca92ac280813a3b605d8c421225fd9913154103ee1fbd", size = 23039, upload-time = "2023-04-14T08:10:22.998Z" }
 wheels = [
@@ -2175,8 +1953,7 @@ version = "0.21.0"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "pillow" },
-    { name = "sphinx", version = "9.0.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" },
-    { name = "sphinx", version = "9.1.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" },
+    { name = "sphinx" },
 ]
 sdist = { url = "https://files.pythonhosted.org/packages/fb/9d/91334ba9370de74564c8a1e0c54ce1bc638b35e00177cc02cb25c9c14348/sphinx_gallery-0.21.0.tar.gz", hash = "sha256:72a7734ad9100878345b8b65c249148cc0f1cd0e274adf3e3900214e4c2c5bee", size = 483616, upload-time = "2026-04-24T03:09:28.173Z" }
 wheels = [
@@ -2184,18 +1961,9 @@ wheels = [
 ]
 
 [[package]]
-name = "sphinx-multiversion"
-version = "0.2.4"
-source = { registry = "https://pypi.org/simple" }
-dependencies = [
-    { name = "sphinx", version = "9.0.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" },
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-]
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-    { url = "https://files.pythonhosted.org/packages/05/ad/4989e6be165805694e93d09bc57425aa1368273b7de4fe3083fe4310803a/sphinx_multiversion-0.2.4-py3-none-any.whl", hash = "sha256:dec29f2a5890ad68157a790112edc0eb63140e70f9df0a363743c6258fbeb478", size = 9642, upload-time = "2020-08-12T15:48:19.649Z" },
-]
+name = "sphinx-polyversion"
+version = "2.0.0"
+source = { git = "https://github.com/real-yfprojects/sphinx-polyversion.git#36896c3041ac9995f3ce1c67c29799ae6dc962c1" }
 
 [[package]]
 name = "sphinxcontrib-applehelp"
@@ -2256,8 +2024,7 @@ name = "sphinxcontrib-towncrier"
 version = "0.5.0a0"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
-    { name = "sphinx", version = "9.0.4", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.12'" },
-    { name = "sphinx", version = "9.1.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.12'" },
+    { name = "sphinx" },
     { name = "towncrier" },
 ]
 sdist = { url = "https://files.pythonhosted.org/packages/21/fe/72ed57093e28af10595c50839b183c5fdf0952482e9ef0ca6eb90eb85c5d/sphinxcontrib_towncrier-0.5.0a0.tar.gz", hash = "sha256:294e69df6e275e7a86df7ea6a927cc7c28c2c370a884cd5c45de6ec989858f27", size = 62453, upload-time = "2025-02-28T01:59:16.894Z" }
@@ -2275,13 +2042,6 @@ dependencies = [
 ]
 sdist = { url = "https://files.pythonhosted.org/packages/57/da/6fbf010c8ebb347679d0d100b22fe9ba5e13fd04046c5df7280d2f0bf706/sqlalchemy-2.0.50.tar.gz", hash = "sha256:af5607d11ef90fd6a5c0549fe0045dce1663d427426bcfb506dcb5346a85a3b9", size = 9907424, upload-time = "2026-05-24T19:20:04.018Z" }
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     { url = "https://files.pythonhosted.org/packages/8a/2b/514fce8a7df81cf5bad7ff7865de7ac0c5776a38cc043475c4703eb7fe8b/sqlalchemy-2.0.50-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:110fdac56ace278949f00de805edacbd6141e382d992f9ba28238b3a0827a600", size = 3357994, upload-time = "2026-05-24T20:17:13.495Z" },
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From 33c920332ac4ad5b022a0e052a7e3f03ef084b48 Mon Sep 17 00:00:00 2001
From: Fede Raimondo <f.raimondo@fz-juelich.de>
Date: Fri, 29 May 2026 13:15:02 +0300
Subject: [PATCH 2/8] Fix linter

---
 docs/poly.py | 1 -
 1 file changed, 1 deletion(-)

diff --git a/docs/poly.py b/docs/poly.py
index 816c287fb..91f885b5f 100644
--- a/docs/poly.py
+++ b/docs/poly.py
@@ -341,7 +341,6 @@ def root_data(driver):
 
     """
     revisions = driver.builds
-    _, tags = refs_by_type(revisions)
     latest = latest_tag
     return {"revisions": revisions, "latest": latest}
 

From fc67a353566ee297df746a42561b942f866fb74c Mon Sep 17 00:00:00 2001
From: Fede Raimondo <f.raimondo@fz-juelich.de>
Date: Fri, 29 May 2026 13:34:59 +0300
Subject: [PATCH 3/8] Use uv to run github actions

---
 .github/workflows/docs-preview.yml | 2 +-
 .github/workflows/docs.yml         | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/docs-preview.yml b/.github/workflows/docs-preview.yml
index 223e2aeb2..f6b361836 100644
--- a/.github/workflows/docs-preview.yml
+++ b/.github/workflows/docs-preview.yml
@@ -35,7 +35,7 @@ jobs:
 
     - name: Test build docs
       run: |
-        make -C docs/ local
+        uv run make -C docs/ local
 
     - uses: rossjrw/pr-preview-action@v1
       with:
diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
index e99a89ec1..54f4a7156 100644
--- a/.github/workflows/docs.yml
+++ b/.github/workflows/docs.yml
@@ -42,7 +42,7 @@ jobs:
     - name: Build docs
       # Use the args we normally pass to sphinx-build, but run sphinx-polyversion
       run: |
-        make -C docs/ html
+        uv run make -C docs/ html
         touch docs/_build/.nojekyll
         cp docs/redirect.html docs/_build/index.html
     - uses: peaceiris/actions-gh-pages@v4

From 460825222b3c464294990ddcc350599279caa0fa Mon Sep 17 00:00:00 2001
From: Fede Raimondo <f.raimondo@fz-juelich.de>
Date: Fri, 29 May 2026 13:41:12 +0300
Subject: [PATCH 4/8] Use uv for linting

---
 .github/workflows/lint.yml | 12 +++++++-----
 pyproject.toml             |  5 +++--
 2 files changed, 10 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml
index 3cf2febfc..1583a8213 100644
--- a/.github/workflows/lint.yml
+++ b/.github/workflows/lint.yml
@@ -11,12 +11,14 @@ jobs:
       - uses: actions/checkout@v6
       - uses: actions/setup-python@v6
         with:
-          python-version: "3.x"
+          python-version-file: "pyproject.toml"
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0
       - name: Install Python dependencies
         run: |
-          python -m pip install --upgrade pip
-          python -m pip install tox "ruff>=0.1.0"
+          uv sync --locked --extra dev
       - name: Run ruff
-        run: ruff check --output-format=github .
+        run: uv run ruff check --output-format=github .
       - name: Run codespell
-        run: tox -e codespell
+        run: uv run tox -e codespell
diff --git a/pyproject.toml b/pyproject.toml
index 2f7152aad..70d4ebcae 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -48,11 +48,12 @@ Homepage = "https://juaml.github.io/julearn"
 Source = "https://github.com/juaml/julearn"
 
 [project.optional-dependencies]
+
 dev = [
     "tox",
     "pre-commit",
-    "ruff",
-    "towncrier",
+    "ruff>=0.15.14,<0.16.0",
+    "towncrier>=25.8.0",
 ]
 sphinx = [
     "furo>=2025.7.19",

From 5da6336563078e718d08fd5ace0296d0f89f5176 Mon Sep 17 00:00:00 2001
From: Fede Raimondo <f.raimondo@fz-juelich.de>
Date: Fri, 29 May 2026 13:41:33 +0300
Subject: [PATCH 5/8] Update uv.lock

---
 uv.lock | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/uv.lock b/uv.lock
index a99b0ef92..76c650270 100644
--- a/uv.lock
+++ b/uv.lock
@@ -704,7 +704,7 @@ requires-dist = [
     { name = "panel", marker = "extra == 'viz'", specifier = ">=1.3.0" },
     { name = "param", marker = "extra == 'viz'", specifier = ">=2.0.0" },
     { name = "pre-commit", marker = "extra == 'dev'" },
-    { name = "ruff", marker = "extra == 'dev'" },
+    { name = "ruff", marker = "extra == 'dev'", specifier = ">=0.15.14,<0.16.0" },
     { name = "scikit-learn", specifier = ">=1.5.0,<1.9.0" },
     { name = "scikit-optimize", marker = "extra == 'skopt'", specifier = ">=0.10.2,<0.11.0" },
     { name = "seaborn", marker = "extra == 'sphinx'", specifier = ">=0.13.0,<0.14.0" },
@@ -716,7 +716,7 @@ requires-dist = [
     { name = "sphinx-polyversion", marker = "extra == 'sphinx'", git = "https://github.com/real-yfprojects/sphinx-polyversion.git" },
     { name = "sphinxcontrib-towncrier", marker = "extra == 'sphinx'", specifier = ">=0.5.0a0" },
     { name = "statsmodels", specifier = ">=0.13,<0.15" },
-    { name = "towncrier", marker = "extra == 'dev'" },
+    { name = "towncrier", marker = "extra == 'dev'", specifier = ">=25.8.0" },
     { name = "towncrier", marker = "extra == 'sphinx'", specifier = ">=25.8.0" },
     { name = "tox", marker = "extra == 'dev'" },
 ]

From 7dccc5482a792089f3b702652baed1bf2c726606 Mon Sep 17 00:00:00 2001
From: Fede Raimondo <f.raimondo@fz-juelich.de>
Date: Fri, 29 May 2026 13:43:01 +0300
Subject: [PATCH 6/8] Codespell

---
 docs/conf.py | 2 +-
 docs/poly.py | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/docs/conf.py b/docs/conf.py
index ce45c6f2b..703e86140 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -45,7 +45,7 @@
     ]  # latest by version
 
     if (
-        html_context["currrent"].type_ == GitRefType.BRANCH
+        html_context["current"].type_ == GitRefType.BRANCH
         and html_context["current"].name == "main"
     ):
         major, minor, revision = latest.name.split("v")[-1].split(
diff --git a/docs/poly.py b/docs/poly.py
index 91f885b5f..7ddfcc70d 100644
--- a/docs/poly.py
+++ b/docs/poly.py
@@ -28,7 +28,7 @@
 TAG_REGEX = r"v\d+\.\d+\.\d+"
 
 #: Output dir relative to project root
-#: !!! This name has to be choosen !!!
+#: !!! This name has to be chosen !!!
 OUTPUT_DIR = "docs/_build"
 
 #: Source directory relative to project root

From 7f2a5664625fd35c76938d7225fe2287e7907f49 Mon Sep 17 00:00:00 2001
From: Fede Raimondo <f.raimondo@fz-juelich.de>
Date: Fri, 29 May 2026 14:15:54 +0300
Subject: [PATCH 7/8] Let's run tests also using uv locked versions

---
 .github/workflows/ci.yml | 13 ++++++++++---
 1 file changed, 10 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index d7beb4b29..3ea4bd8ea 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -27,16 +27,23 @@ jobs:
 
     steps:
     - uses: actions/checkout@v6
+
     - uses: actions/setup-python@v6
       with:
         python-version: ${{ matrix.python-version }}
+
+    - name: Install uv
+      uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0
+
     - name: Install Python dependencies
       run: |
-        python -m pip install --upgrade pip setuptools wheel
-        python -m pip install tox tox-gh-actions
+        uv sync --locked --extra dev
+        uv pip install tox-gh-actions
+
     - name: Test with tox
       run: |
-        tox
+        uv run tox
+
     - uses: codecov/codecov-action@v6
       with:
         token: ${{ secrets.CODECOV_TOKEN }}

From 171b31b28d00b355dcfa57c658762d2bc7bd688e Mon Sep 17 00:00:00 2001
From: Fede Raimondo <f.raimondo@fz-juelich.de>
Date: Fri, 29 May 2026 17:16:30 +0300
Subject: [PATCH 8/8] Get polyversion from pip

---
 pyproject.toml |  3 ---
 uv.lock        | 10 +++++++---
 2 files changed, 7 insertions(+), 6 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 70d4ebcae..7ce123698 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -272,9 +272,6 @@ exclude_lines = [
 ]
 precision = 2
 
-[tool.uv.sources]
-sphinx-polyversion = { git = "https://github.com/real-yfprojects/sphinx-polyversion.git" }
-
 [dependency-groups]
 dev = [
     "ipython>=8.18.1",
diff --git a/uv.lock b/uv.lock
index 76c650270..b83739278 100644
--- a/uv.lock
+++ b/uv.lock
@@ -713,7 +713,7 @@ requires-dist = [
     { name = "sphinx-autodoc-typehints", marker = "extra == 'sphinx'", specifier = ">=3.6.1" },
     { name = "sphinx-copybutton", marker = "extra == 'sphinx'", specifier = ">=0.5.2" },
     { name = "sphinx-gallery", marker = "extra == 'sphinx'", specifier = ">=0.21.0" },
-    { name = "sphinx-polyversion", marker = "extra == 'sphinx'", git = "https://github.com/real-yfprojects/sphinx-polyversion.git" },
+    { name = "sphinx-polyversion", marker = "extra == 'sphinx'", specifier = ">=2.0.0" },
     { name = "sphinxcontrib-towncrier", marker = "extra == 'sphinx'", specifier = ">=0.5.0a0" },
     { name = "statsmodels", specifier = ">=0.13,<0.15" },
     { name = "towncrier", marker = "extra == 'dev'", specifier = ">=25.8.0" },
@@ -743,7 +743,7 @@ docs = [
     { name = "sphinx-autodoc-typehints", specifier = ">=3.6.1" },
     { name = "sphinx-copybutton", specifier = ">=0.5.2" },
     { name = "sphinx-gallery", specifier = ">=0.21.0" },
-    { name = "sphinx-polyversion", git = "https://github.com/real-yfprojects/sphinx-polyversion.git" },
+    { name = "sphinx-polyversion", specifier = ">=2.0.0" },
     { name = "sphinxcontrib-towncrier", specifier = ">=0.5.0a0" },
     { name = "towncrier", specifier = ">=25.8.0" },
 ]
@@ -1963,7 +1963,11 @@ wheels = [
 [[package]]
 name = "sphinx-polyversion"
 version = "2.0.0"
-source = { git = "https://github.com/real-yfprojects/sphinx-polyversion.git#36896c3041ac9995f3ce1c67c29799ae6dc962c1" }
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/75/01/7755fc4b01ff281df937f6563c190b55313a14e9b1b5ac960003933f0793/sphinx_polyversion-2.0.0.tar.gz", hash = "sha256:ce5d15bbf5d2003aaec9e25c1646ec4f8a91cd55dac89df60ff17bd15630f926", size = 32265, upload-time = "2025-09-25T15:15:13.035Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/13/ac/88c719ec04351cd1d56c5faab18e6183b3d82eb5c64a10284feeaadb6ff1/sphinx_polyversion-2.0.0-py3-none-any.whl", hash = "sha256:5455e8a5560d587a0401009196612c98b067138e69556891eb9b8edc547e1327", size = 36628, upload-time = "2025-09-25T15:15:11.939Z" },
+]
 
 [[package]]
 name = "sphinxcontrib-applehelp"