Number of genomes downloaded not corresponding to number of entries

[arfaiq]

Hi,

Thank you for this amazing tool - it has saved me a lot of time!

The issue I'm facing, however, is that the tool is only downloading 254 genomes, whereas my taxid file contains 954 taxids.

I'm using the following command:

ncbi-genome-download fungi --format fasta --taxids ./Fungal-Taxids.txt

Any idea why this may be?

[tatiorli]

maybe unclassified taxa? those may not download properly due to matching parameters that don't pick "unclassified spp_name etc.."