VCF Parsing Issue

[17tranap]

I'm running some BCFTools operations on the VCF outputs of the Kevlar pipeline (from simlike).

It's a small issue, but the VCF syntax stumbles on the INFO lines:

##INFO=<ID=IKMERS,Number=1,Type=Integer,Description="number of "interesting" (novel) k-mers spanning the variant alternate allele">

This is because there are quotes around "interesting", and it makes it so that this line cannot be parsed.

It is also missing the INFO fields for CALLCLASS and PART.

[standage]

Thanks for the report @17tranap! I'm not actively working on kevlar at the moment, so it may take me some time to get around to fixing this.