This application will create a mask nifti file of the white matter of the T1 image using Freesurfer's parcellation.
- Lindsey Kitchell (kitchell@indiana.edu)
You can submit this App online at https://brainlife.io/app/5a28180e67007b77e4d51cce# via the "Execute" tab.
- git clone this repo.
- Inside the cloned directory, create
config.jsonwith something like the following content with paths to your input files.
{
"wm": ../wm.nii.gz
}- Execute the main.m file via matlab
If you don't have your own input file, you can download sample datasets from Brainlife.io, or you can use Brainlife CLI.
The output of this App is the white matter mask.
This App require matlab to run.